Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.72540 * 2 1 4 4 C 1.54943 * 110.66788 * 236.90486 * 2 1 3 5 5 C 1.54589 * 102.92076 * 204.14878 * 4 2 1 6 6 C 1.54000 * 105.14119 * 21.96043 * 5 4 2 7 7 N 1.47899 * 107.05560 * 1.22137 * 6 5 4 8 8 C 1.46900 * 110.99718 * 214.15814 * 7 6 5 9 9 C 1.50699 * 109.47257 * 294.27366 * 8 7 6 10 10 O 1.21276 * 120.00143 * 353.80095 * 9 8 7 11 11 N 1.34773 * 120.00080 * 173.80238 * 9 8 7 12 12 C 1.46502 * 120.00329 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.84689 * 23.80131 * 12 11 9 14 14 C 1.53782 * 113.61473 * 154.99887 * 12 11 9 15 15 C 1.53778 * 87.07931 * 89.12074 * 14 12 11 16 16 H 1.09003 * 113.61060 * 270.79352 * 15 14 12 17 17 N 1.46499 * 113.61624 * 139.98379 * 15 14 12 18 18 C 1.36935 * 120.00392 * 154.99621 * 17 15 14 19 19 H 1.08003 * 119.99836 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00054 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00113 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47400 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.47318 * 300.00059 * 22 20 18 25 25 H 1.48506 * 109.47304 * 60.00050 * 22 20 18 26 26 C 1.53777 * 113.61521 * 252.49950 * 12 11 9 27 27 H 1.08996 * 109.46625 * 296.90191 * 1 2 3 28 28 H 1.08999 * 109.47015 * 56.90873 * 1 2 3 29 29 H 1.09001 * 109.46535 * 176.90254 * 1 2 3 30 30 H 1.09001 * 110.72379 * 85.79091 * 4 2 1 31 31 H 1.08997 * 110.87238 * 322.58259 * 4 2 1 32 32 H 1.09000 * 110.31055 * 263.04113 * 5 4 2 33 33 H 1.09000 * 110.39267 * 140.91365 * 5 4 2 34 34 H 1.09000 * 109.91546 * 241.87155 * 6 5 4 35 35 H 1.08997 * 110.08329 * 120.66887 * 6 5 4 36 36 H 1.09007 * 109.46791 * 174.27519 * 8 7 6 37 37 H 1.09001 * 109.47189 * 54.27826 * 8 7 6 38 38 H 0.97000 * 120.00091 * 0.02562 * 11 9 8 39 39 H 1.08997 * 113.61567 * 334.56571 * 14 12 11 40 40 H 1.08999 * 113.68717 * 203.67463 * 14 12 11 41 41 H 0.97002 * 119.99569 * 334.99271 * 17 15 14 42 42 H 0.97000 * 119.99876 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.61727 * 156.33469 * 26 12 11 44 44 H 1.08998 * 113.61603 * 25.42473 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7916 -1.2145 5 6 3.4853 -1.2196 -0.7423 6 6 3.4279 -1.1647 0.7956 7 7 2.0543 -0.7589 1.1642 8 6 2.0581 0.0719 2.3757 9 6 2.5226 -0.7523 3.5486 10 8 2.7133 -1.9426 3.4158 11 7 2.7262 -0.1668 4.7453 12 6 3.1784 -0.9679 5.8855 13 1 3.6980 -1.8774 5.5841 14 6 3.9301 -0.1532 6.9514 15 6 2.5626 0.1039 7.6062 16 1 2.0586 0.9939 7.2294 17 7 2.5921 0.0436 9.0697 18 6 1.6544 0.7214 9.8020 19 1 0.8932 1.3009 9.3006 20 6 1.6820 0.6638 11.1886 21 7 2.6093 -0.0428 11.7996 22 14 0.4032 1.5891 12.1875 23 1 0.6495 1.3663 13.6349 24 1 0.4954 3.0405 11.8868 25 1 -0.9524 1.0957 11.8349 26 6 2.0887 -1.2012 6.9452 27 1 -0.3632 0.4650 0.9164 28 1 -0.3633 0.5611 -0.8610 29 1 -0.3632 -1.0262 -0.0555 30 1 2.1431 -0.1513 -2.0942 31 1 1.4572 -1.6643 -1.4202 32 1 4.2374 -0.5258 -1.1179 33 1 3.7062 -2.2333 -1.0766 34 1 4.1441 -0.4322 1.1680 35 1 3.6499 -2.1465 1.2137 36 1 1.0501 0.4401 2.5668 37 1 2.7328 0.9164 2.2350 38 1 2.5734 0.7852 4.8517 39 1 4.4029 0.7473 6.5596 40 1 4.6028 -0.7514 7.5659 41 1 3.2759 -0.4767 9.5199 42 1 2.6288 -0.0828 12.7685 43 1 2.2575 -2.0870 7.5575 44 1 1.0750 -1.1465 6.5485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020585316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -22.870332 kcal Electronic energy + Delta-G solvation = -21994.812044 eV Core-core repulsion = 18753.871765 eV Total energy + Delta-G solvation = -3240.940280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31285 -40.08712 -38.84641 -35.74830 -34.15827 -33.20113 -32.26360 -31.75613 -27.85768 -26.56867 -26.44020 -26.09172 -23.83657 -22.32989 -21.48703 -21.04998 -20.35277 -19.15114 -18.05847 -17.40949 -16.99238 -16.69525 -16.21760 -16.04291 -15.73418 -15.46514 -15.25897 -14.79485 -14.33078 -14.25523 -13.90795 -13.53103 -13.44586 -13.32754 -13.24432 -12.86740 -12.77161 -12.63296 -12.54166 -12.23163 -12.20871 -12.06679 -11.84035 -11.73177 -11.60864 -11.44129 -11.19661 -10.83642 -10.80093 -9.99800 -9.35821 -8.99171 -7.94662 -5.23359 1.47864 1.50711 1.56706 1.66130 2.06602 2.56818 3.03281 3.36664 3.63386 3.70658 3.73571 3.83702 3.95876 3.98230 4.06713 4.24160 4.29466 4.32768 4.33521 4.40149 4.49072 4.58548 4.73498 4.80045 4.88913 4.90615 4.91228 4.94504 5.05325 5.11510 5.13513 5.20840 5.23005 5.27812 5.32700 5.42040 5.50747 5.72295 5.92700 6.03799 6.27207 6.64046 7.32577 7.33361 8.10011 8.32400 9.28506 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.002799 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.832979 B =10002.684789 C =10521.387212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.040 3.960 7 N -0.519 5.519 8 C 0.033 3.967 9 C 0.511 3.489 10 O -0.568 6.568 11 N -0.700 5.700 12 C 0.137 3.863 13 H 0.085 0.915 14 C -0.142 4.142 15 C 0.155 3.845 16 H 0.085 0.915 17 N -0.728 5.728 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.298 1.298 24 H -0.275 1.275 25 H -0.280 1.280 26 C -0.174 4.174 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 3.986 -27.789 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.088 4.088 7 N -0.244 5.244 8 C -0.098 4.098 9 C 0.298 3.702 10 O -0.446 6.446 11 N -0.353 5.353 12 C 0.030 3.970 13 H 0.103 0.897 14 C -0.182 4.182 15 C 0.045 3.955 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.377 4.377 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.224 1.224 24 H -0.200 1.200 25 H -0.206 1.206 26 C -0.216 4.216 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.204 2.819 -27.702 27.846 hybrid contribution 0.134 0.852 1.390 1.636 sum -0.070 3.671 -26.312 26.567 Atomic orbital electron populations 1.21696 0.93170 1.02122 1.02314 1.22926 0.96504 0.96098 0.89399 0.91437 1.22529 0.95365 1.00219 0.97156 1.22407 0.98252 1.02578 0.93458 1.22799 0.88947 1.00591 0.96487 1.64464 1.20094 1.37488 1.02391 1.22200 1.04360 0.94406 0.88814 1.21090 0.76418 0.88300 0.84382 1.90678 1.51993 1.17358 1.84609 1.45597 1.68233 1.12738 1.08688 1.21429 0.95836 0.94993 0.84738 0.89658 1.23660 0.97631 1.00600 0.96264 1.21953 0.95385 0.95544 0.82644 0.89721 1.42602 1.34472 1.58172 1.01260 1.19682 1.06614 1.22144 0.89242 0.90304 1.25590 1.01213 1.02270 0.97882 1.69811 1.37471 1.46718 1.08128 0.85221 0.78753 0.78644 0.77198 1.22409 1.20041 1.20599 1.24152 0.98494 1.01077 0.97848 0.92687 0.90361 0.93076 0.88950 0.91273 0.90075 0.91089 0.94070 0.92391 0.86011 0.89415 0.74923 0.89436 0.89718 0.79446 0.94047 0.91494 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.50 71.98 0.68 -1.04 16 2 C 0.06 0.81 2.92 45.27 0.13 0.94 16 3 H 0.07 0.76 8.02 -2.39 -0.02 0.74 16 4 C -0.11 -1.42 6.50 31.80 0.21 -1.22 16 5 C -0.13 -1.84 6.93 31.47 0.22 -1.63 16 6 C 0.04 0.80 5.66 86.45 0.49 1.29 16 7 N -0.52 -10.45 4.69 -862.76 -4.04 -14.49 16 8 C 0.03 0.60 5.17 85.56 0.44 1.04 16 9 C 0.51 13.19 7.51 87.66 0.66 13.85 16 10 O -0.57 -19.92 14.64 -3.02 -0.04 -19.97 16 11 N -0.70 -16.54 5.26 -440.05 -2.32 -18.85 16 12 C 0.14 4.03 4.32 45.52 0.20 4.23 16 13 H 0.09 2.76 7.46 -2.39 -0.02 2.74 16 14 C -0.14 -4.29 7.58 31.12 0.24 -4.05 16 15 C 0.15 5.76 4.36 45.52 0.20 5.96 16 16 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 17 N -0.73 -36.07 5.40 -320.45 -1.73 -37.80 16 18 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 22 Si 0.97 45.70 29.55 68.60 2.03 47.72 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.17 -6.16 7.68 31.12 0.24 -5.92 16 27 H 0.05 0.70 7.35 -2.39 -0.02 0.69 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.80 8.11 -2.39 -0.02 0.78 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.96 8.03 -2.39 -0.02 0.95 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 0.78 7.64 -2.39 -0.02 0.77 16 35 H 0.06 1.54 7.32 -2.39 -0.02 1.53 16 36 H 0.12 1.79 7.30 -2.38 -0.02 1.77 16 37 H 0.09 1.12 7.94 -2.39 -0.02 1.10 16 38 H 0.41 7.36 8.70 -92.71 -0.81 6.55 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 41 H 0.37 20.04 7.92 -92.71 -0.73 19.30 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -70.41 352.65 -1.37 -71.78 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.55 Total: 33.75 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.00 Total: -3.05 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -7.81 Total: -130.24 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.97 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.41 -1.37 -71.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020585316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.914 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds