Wall clock time and date at job start Tue Mar 31 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.37076 * 2 1 4 4 C 1.54379 * 110.41034 * 122.34983 * 2 1 3 5 5 C 1.54266 * 105.05973 * 142.63055 * 4 2 1 6 6 C 1.54377 * 105.06190 * 0.02562 * 5 4 2 7 7 N 1.48562 * 104.59407 * 336.14868 * 6 5 4 8 8 C 1.46895 * 111.00142 * 159.03785 * 7 6 5 9 9 C 1.50705 * 109.46820 * 54.58144 * 8 7 6 10 10 O 1.21281 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99645 * 180.02562 * 9 8 7 12 12 C 1.46509 * 119.99829 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.85064 * 23.79894 * 12 11 9 14 14 C 1.53777 * 113.61609 * 155.00046 * 12 11 9 15 15 C 1.53774 * 87.08453 * 139.97911 * 14 12 11 16 16 H 1.08999 * 113.61457 * 219.93625 * 15 14 12 17 17 N 1.46499 * 113.61847 * 89.11321 * 15 14 12 18 18 C 1.36930 * 120.00282 * 154.99940 * 17 15 14 19 19 H 1.07997 * 119.99922 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00422 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99895 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47702 * 89.99610 * 22 20 18 24 24 H 1.48507 * 109.47152 * 209.99639 * 22 20 18 25 25 H 1.48502 * 109.47286 * 329.98965 * 22 20 18 26 26 C 1.53781 * 113.60927 * 252.49585 * 12 11 9 27 27 H 1.08994 * 109.46902 * 299.10374 * 1 2 3 28 28 H 1.08998 * 109.46298 * 59.10151 * 1 2 3 29 29 H 1.08997 * 109.47052 * 179.10374 * 1 2 3 30 30 H 1.08996 * 110.32596 * 23.73811 * 4 2 1 31 31 H 1.09000 * 110.41377 * 261.57403 * 4 2 1 32 32 H 1.09005 * 110.32054 * 118.89995 * 5 4 2 33 33 H 1.09003 * 110.32265 * 241.10234 * 5 4 2 34 34 H 1.09000 * 110.40820 * 94.92490 * 6 5 4 35 35 H 1.08989 * 110.41015 * 217.36711 * 6 5 4 36 36 H 1.08998 * 109.47460 * 174.57887 * 8 7 6 37 37 H 1.08997 * 109.47240 * 294.58025 * 8 7 6 38 38 H 0.96995 * 120.00540 * 359.97438 * 11 9 8 39 39 H 1.09000 * 113.61036 * 254.53123 * 14 12 11 40 40 H 1.08999 * 113.61527 * 25.42889 * 14 12 11 41 41 H 0.97001 * 119.99553 * 335.00305 * 17 15 14 42 42 H 0.96989 * 120.00689 * 180.02562 * 21 20 18 43 43 H 1.08993 * 113.62062 * 334.56405 * 26 12 11 44 44 H 1.08997 * 113.61341 * 105.47377 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7742 1.2223 5 6 3.3178 -1.5181 0.7071 6 6 3.4295 -1.1303 -0.7830 7 7 2.0487 -0.7468 -1.1746 8 6 2.0578 0.1000 -2.3749 9 6 2.8096 -0.6000 -3.4777 10 8 3.2907 -1.6961 -3.2827 11 7 2.9480 -0.0075 -4.6802 12 6 3.6783 -0.6882 -5.7525 13 1 3.7002 -1.7708 -5.6286 14 6 3.2631 -0.2377 -7.1630 15 6 4.7533 -0.3018 -7.5369 16 1 5.0775 0.5157 -8.1808 17 7 5.1796 -1.6151 -8.0266 18 6 6.2672 -1.7180 -8.8521 19 1 6.8110 -0.8311 -9.1419 20 6 6.6714 -2.9624 -9.3157 21 7 7.7165 -3.0614 -10.1096 22 14 5.7312 -4.4966 -8.8139 23 1 4.6493 -4.7579 -9.7969 24 1 6.6585 -5.6560 -8.7786 25 1 5.1386 -4.2957 -7.4672 26 6 5.0562 -0.0720 -6.0467 27 1 -0.3633 0.4998 0.8979 28 1 -0.3632 0.5277 -0.8818 29 1 -0.3633 -1.0275 -0.0161 30 1 1.3236 -1.4863 1.5776 31 1 2.3413 -0.0832 2.0199 32 1 4.2042 -1.1909 1.2506 33 1 3.1861 -2.5953 0.8095 34 1 4.1079 -0.2861 -0.9062 35 1 3.7694 -1.9815 -1.3728 36 1 1.0330 0.2868 -2.6956 37 1 2.5458 1.0477 -2.1473 38 1 2.5635 0.8693 -4.8361 39 1 2.6487 -0.9670 -7.6909 40 1 2.8478 0.7695 -7.1951 41 1 4.6913 -2.4117 -7.7660 42 1 7.9988 -3.9308 -10.4338 43 1 5.1312 0.9805 -5.7737 44 1 5.8894 -0.6675 -5.6737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020585317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:14 Heat of formation + Delta-G solvation = 6.849647 kcal Electronic energy + Delta-G solvation = -22238.588129 eV Core-core repulsion = 18998.936604 eV Total energy + Delta-G solvation = -3239.651525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30828 -39.08484 -37.78487 -34.15220 -32.86979 -32.32170 -31.56309 -30.33879 -27.07570 -25.63922 -25.23949 -24.17767 -22.48954 -21.36280 -20.51312 -20.36975 -18.93923 -17.66371 -16.87008 -16.68014 -15.85682 -15.58424 -15.20237 -14.80261 -14.68855 -14.19336 -13.82829 -13.60768 -13.31504 -13.01923 -12.70753 -12.58293 -12.28999 -12.20911 -12.10293 -12.04158 -11.92667 -11.59977 -11.29487 -11.00730 -10.95176 -10.84121 -10.71873 -10.37639 -10.27083 -9.88945 -9.63441 -9.50873 -8.95690 -8.81181 -8.64197 -7.31839 -5.79889 -3.16697 2.66842 3.08987 3.39040 3.43837 3.46927 3.81308 4.32971 4.48906 4.57986 4.70714 4.76426 4.91591 4.94936 5.00187 5.07119 5.10192 5.14834 5.19894 5.24861 5.38693 5.40435 5.48950 5.57768 5.66495 5.68315 5.75828 5.81377 5.94208 5.95545 5.98108 6.05420 6.15203 6.27124 6.48680 6.57190 6.65104 6.68240 6.72817 6.89467 7.59390 7.96493 8.32273 8.39368 9.16654 9.89173 10.07493 11.37954 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027999 B = 0.003288 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.787071 B = 8513.119720 C = 8975.928653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 H 0.051 0.949 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.029 3.971 7 N -0.489 5.489 8 C 0.025 3.975 9 C 0.509 3.491 10 O -0.524 6.524 11 N -0.719 5.719 12 C 0.124 3.876 13 H 0.110 0.890 14 C -0.165 4.165 15 C 0.177 3.823 16 H 0.077 0.923 17 N -0.730 5.730 18 C -0.249 4.249 19 H 0.092 0.908 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.275 1.275 26 C -0.182 4.182 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.396 0.604 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 10.467 20.968 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 H 0.069 0.931 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.098 4.098 7 N -0.214 5.214 8 C -0.107 4.107 9 C 0.294 3.706 10 O -0.399 6.399 11 N -0.370 5.370 12 C 0.020 3.980 13 H 0.128 0.872 14 C -0.205 4.205 15 C 0.064 3.936 16 H 0.095 0.905 17 N -0.370 5.370 18 C -0.379 4.379 19 H 0.110 0.890 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.225 4.225 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.230 0.770 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.196 0.804 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.855 9.208 20.789 27.160 hybrid contribution -0.274 0.114 0.399 0.497 sum -15.129 9.322 21.188 27.654 Atomic orbital electron populations 1.21721 0.93740 1.02682 1.01290 1.22739 0.96218 0.95730 0.90674 0.93144 1.22346 0.97824 0.99057 0.96515 1.22337 0.97516 1.01117 0.95534 1.23356 0.88822 1.01948 0.95684 1.65279 1.19619 1.35292 1.01238 1.22221 1.01676 0.95252 0.91531 1.20460 0.80193 0.86366 0.83540 1.90670 1.48130 1.20223 1.80919 1.46085 1.56909 1.21711 1.12263 1.22640 0.92507 0.98271 0.84626 0.87229 1.23911 1.00010 1.01387 0.95209 1.20855 0.90977 0.89657 0.92073 0.90503 1.42546 1.34704 1.02171 1.57546 1.19085 1.03569 0.95033 1.20189 0.88974 1.24671 0.97697 0.97195 0.99278 1.69692 1.26888 1.23862 1.37387 0.86593 0.79621 0.84169 0.78483 1.20939 1.21553 1.20097 1.24280 0.96859 0.99975 1.01352 0.92303 0.92817 0.91608 0.90887 0.91506 0.91552 0.90942 0.94566 0.87077 0.87889 0.92012 0.77013 0.90964 0.89881 0.80362 0.92940 0.90912 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.34 37.16 0.35 -0.63 16 2 C 0.05 0.46 2.88 -66.08 -0.19 0.27 16 3 H 0.05 0.40 7.82 -51.93 -0.41 -0.01 16 4 C -0.12 -0.95 6.55 -25.35 -0.17 -1.12 16 5 C -0.13 -1.20 7.00 -25.35 -0.18 -1.37 16 6 C 0.03 0.35 5.31 -2.18 -0.01 0.34 16 7 N -0.49 -5.46 5.02 -223.59 -1.12 -6.58 16 8 C 0.02 0.25 5.40 -4.98 -0.03 0.22 16 9 C 0.51 6.89 7.54 -10.98 -0.08 6.80 16 10 O -0.52 -9.38 13.26 5.56 0.07 -9.30 16 11 N -0.72 -8.67 5.36 -53.01 -0.28 -8.96 16 12 C 0.12 1.91 4.12 -67.12 -0.28 1.63 16 13 H 0.11 2.05 7.46 -51.93 -0.39 1.66 16 14 C -0.17 -2.40 7.58 -25.92 -0.20 -2.60 16 15 C 0.18 3.28 4.56 -67.12 -0.31 2.97 16 16 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 17 N -0.73 -17.22 5.11 -52.64 -0.27 -17.49 16 18 C -0.25 -7.01 10.45 -15.06 -0.16 -7.17 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 22 Si 0.88 22.46 27.74 -169.99 -4.71 17.74 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.27 -6.75 6.52 56.52 0.37 -6.38 16 26 C -0.18 -3.04 7.68 -25.91 -0.20 -3.24 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 7.75 -51.93 -0.40 -0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.11 1.67 6.05 -51.93 -0.31 1.35 16 36 H 0.10 0.83 7.78 -51.93 -0.40 0.43 16 37 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 38 H 0.40 3.39 8.73 -40.82 -0.36 3.04 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.36 8.57 5.76 -40.82 -0.24 8.33 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -33.31 347.90 -9.39 -42.70 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.55 Total: 8.92 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.54 Total: -3.76 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.90 Total: -61.55 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.31 -9.39 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020585317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.554 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds