Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.37076 * 2 1 4 4 C 1.54379 * 110.41034 * 122.34983 * 2 1 3 5 5 C 1.54266 * 105.05973 * 142.63055 * 4 2 1 6 6 C 1.54377 * 105.06190 * 0.02562 * 5 4 2 7 7 N 1.48562 * 104.59407 * 336.14868 * 6 5 4 8 8 C 1.46895 * 111.00142 * 159.03785 * 7 6 5 9 9 C 1.50705 * 109.46820 * 54.58144 * 8 7 6 10 10 O 1.21281 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99645 * 180.02562 * 9 8 7 12 12 C 1.46509 * 119.99829 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.85064 * 23.79894 * 12 11 9 14 14 C 1.53777 * 113.61609 * 155.00046 * 12 11 9 15 15 C 1.53774 * 87.08453 * 139.97911 * 14 12 11 16 16 H 1.08999 * 113.61457 * 219.93625 * 15 14 12 17 17 N 1.46499 * 113.61847 * 89.11321 * 15 14 12 18 18 C 1.36930 * 120.00282 * 154.99940 * 17 15 14 19 19 H 1.07997 * 119.99922 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00422 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99895 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47702 * 89.99610 * 22 20 18 24 24 H 1.48507 * 109.47152 * 209.99639 * 22 20 18 25 25 H 1.48502 * 109.47286 * 329.98965 * 22 20 18 26 26 C 1.53781 * 113.60927 * 252.49585 * 12 11 9 27 27 H 1.08994 * 109.46902 * 299.10374 * 1 2 3 28 28 H 1.08998 * 109.46298 * 59.10151 * 1 2 3 29 29 H 1.08997 * 109.47052 * 179.10374 * 1 2 3 30 30 H 1.08996 * 110.32596 * 23.73811 * 4 2 1 31 31 H 1.09000 * 110.41377 * 261.57403 * 4 2 1 32 32 H 1.09005 * 110.32054 * 118.89995 * 5 4 2 33 33 H 1.09003 * 110.32265 * 241.10234 * 5 4 2 34 34 H 1.09000 * 110.40820 * 94.92490 * 6 5 4 35 35 H 1.08989 * 110.41015 * 217.36711 * 6 5 4 36 36 H 1.08998 * 109.47460 * 174.57887 * 8 7 6 37 37 H 1.08997 * 109.47240 * 294.58025 * 8 7 6 38 38 H 0.96995 * 120.00540 * 359.97438 * 11 9 8 39 39 H 1.09000 * 113.61036 * 254.53123 * 14 12 11 40 40 H 1.08999 * 113.61527 * 25.42889 * 14 12 11 41 41 H 0.97001 * 119.99553 * 335.00305 * 17 15 14 42 42 H 0.96989 * 120.00689 * 180.02562 * 21 20 18 43 43 H 1.08993 * 113.62062 * 334.56405 * 26 12 11 44 44 H 1.08997 * 113.61341 * 105.47377 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7742 1.2223 5 6 3.3178 -1.5181 0.7071 6 6 3.4295 -1.1303 -0.7830 7 7 2.0487 -0.7468 -1.1746 8 6 2.0578 0.1000 -2.3749 9 6 2.8096 -0.6000 -3.4777 10 8 3.2907 -1.6961 -3.2827 11 7 2.9480 -0.0075 -4.6802 12 6 3.6783 -0.6882 -5.7525 13 1 3.7002 -1.7708 -5.6286 14 6 3.2631 -0.2377 -7.1630 15 6 4.7533 -0.3018 -7.5369 16 1 5.0775 0.5157 -8.1808 17 7 5.1796 -1.6151 -8.0266 18 6 6.2672 -1.7180 -8.8521 19 1 6.8110 -0.8311 -9.1419 20 6 6.6714 -2.9624 -9.3157 21 7 7.7165 -3.0614 -10.1096 22 14 5.7312 -4.4966 -8.8139 23 1 4.6493 -4.7579 -9.7969 24 1 6.6585 -5.6560 -8.7786 25 1 5.1386 -4.2957 -7.4672 26 6 5.0562 -0.0720 -6.0467 27 1 -0.3633 0.4998 0.8979 28 1 -0.3632 0.5277 -0.8818 29 1 -0.3633 -1.0275 -0.0161 30 1 1.3236 -1.4863 1.5776 31 1 2.3413 -0.0832 2.0199 32 1 4.2042 -1.1909 1.2506 33 1 3.1861 -2.5953 0.8095 34 1 4.1079 -0.2861 -0.9062 35 1 3.7694 -1.9815 -1.3728 36 1 1.0330 0.2868 -2.6956 37 1 2.5458 1.0477 -2.1473 38 1 2.5635 0.8693 -4.8361 39 1 2.6487 -0.9670 -7.6909 40 1 2.8478 0.7695 -7.1951 41 1 4.6913 -2.4117 -7.7660 42 1 7.9988 -3.9308 -10.4338 43 1 5.1312 0.9805 -5.7737 44 1 5.8894 -0.6675 -5.6737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020585317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -18.573555 kcal Electronic energy + Delta-G solvation = -22239.690562 eV Core-core repulsion = 18998.936604 eV Total energy + Delta-G solvation = -3240.753957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34991 -40.15513 -38.92205 -35.81196 -34.34462 -33.29724 -32.27023 -32.21211 -28.01397 -26.54937 -26.37910 -25.82740 -24.10781 -22.25943 -21.47810 -21.09745 -20.47245 -19.61073 -17.88179 -17.72660 -16.93068 -16.57632 -16.34844 -16.12889 -16.07538 -15.48648 -14.84387 -14.74995 -14.69376 -14.25420 -14.12036 -13.74827 -13.74672 -13.36456 -13.16006 -12.91857 -12.86872 -12.57452 -12.51603 -12.36316 -12.26702 -12.03934 -11.87148 -11.77962 -11.61852 -11.42622 -11.31698 -10.96310 -10.61378 -9.97917 -9.44830 -9.33767 -8.06729 -5.39892 1.34598 1.36980 1.43188 1.63861 2.12458 2.43665 3.03669 3.23292 3.47002 3.62519 3.66474 3.75079 3.82416 3.97827 4.06232 4.21929 4.23042 4.24731 4.31984 4.40045 4.51079 4.58782 4.74302 4.76324 4.81971 4.89892 4.93482 4.97834 5.05453 5.09391 5.12512 5.19565 5.23514 5.27027 5.31781 5.42046 5.64496 5.76597 5.86622 6.02178 6.19102 6.65161 7.03412 7.34856 7.80738 7.96740 9.14578 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027999 B = 0.003288 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.787071 B = 8513.119720 C = 8975.928653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.126 4.126 6 C 0.031 3.969 7 N -0.511 5.511 8 C 0.032 3.968 9 C 0.502 3.498 10 O -0.575 6.575 11 N -0.702 5.702 12 C 0.130 3.870 13 H 0.073 0.927 14 C -0.137 4.137 15 C 0.151 3.849 16 H 0.077 0.923 17 N -0.738 5.738 18 C -0.231 4.231 19 H 0.065 0.935 20 C -0.060 4.060 21 N -0.980 5.980 22 Si 0.948 3.052 23 H -0.273 1.273 24 H -0.295 1.295 25 H -0.264 1.264 26 C -0.172 4.172 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.419 0.581 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.106 0.894 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.017 12.593 22.867 31.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.164 4.164 6 C -0.097 4.097 7 N -0.236 5.236 8 C -0.099 4.099 9 C 0.290 3.710 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.025 3.975 13 H 0.091 0.909 14 C -0.176 4.176 15 C 0.041 3.959 16 H 0.095 0.905 17 N -0.379 5.379 18 C -0.362 4.362 19 H 0.083 0.917 20 C -0.252 4.252 21 N -0.631 5.631 22 Si 0.776 3.224 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.190 1.190 26 C -0.214 4.214 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.256 0.744 39 H 0.088 0.912 40 H 0.147 0.853 41 H 0.196 0.804 42 H 0.067 0.933 43 H 0.124 0.876 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.840 11.419 22.723 31.064 hybrid contribution 0.660 -0.422 -0.158 0.799 sum -17.179 10.997 22.564 30.417 Atomic orbital electron populations 1.21710 0.92629 1.02186 1.02552 1.22842 0.97004 0.95980 0.89478 0.91849 1.22373 0.96858 0.99272 0.96928 1.22327 0.99049 1.00856 0.94208 1.23172 0.89554 1.00397 0.96595 1.65250 1.18906 1.36854 1.02606 1.22259 1.02645 0.95251 0.89741 1.21218 0.79585 0.85861 0.84351 1.90679 1.50213 1.22673 1.81785 1.45837 1.56119 1.22370 1.11102 1.22208 0.92318 0.96576 0.86433 0.90905 1.23752 0.96655 1.03860 0.93331 1.21216 0.94476 0.87302 0.92874 0.90480 1.42570 1.33689 1.04376 1.57296 1.19094 1.03862 0.93934 1.19287 0.91736 1.25423 0.99067 1.00482 1.00222 1.69852 1.29147 1.24412 1.39672 0.85517 0.78291 0.79916 0.78698 1.19832 1.22148 1.18965 1.24169 0.96426 1.01435 0.99361 0.90530 0.92113 0.92949 0.90768 0.89580 0.90452 0.91915 0.94788 0.91023 0.85308 0.89486 0.74358 0.91248 0.85322 0.80377 0.93256 0.87594 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.34 71.98 0.67 -0.81 16 2 C 0.05 0.77 2.88 45.07 0.13 0.90 16 3 H 0.06 0.75 7.82 -2.39 -0.02 0.73 16 4 C -0.12 -1.58 6.55 31.49 0.21 -1.38 16 5 C -0.13 -2.28 7.00 31.49 0.22 -2.06 16 6 C 0.03 0.72 5.31 86.45 0.46 1.18 16 7 N -0.51 -10.50 5.02 -861.32 -4.32 -14.82 16 8 C 0.03 0.54 5.40 85.56 0.46 1.00 16 9 C 0.50 12.80 7.54 87.66 0.66 13.46 16 10 O -0.57 -20.91 13.26 -3.03 -0.04 -20.95 16 11 N -0.70 -14.95 5.36 -440.03 -2.36 -17.31 16 12 C 0.13 3.80 4.12 45.51 0.19 3.99 16 13 H 0.07 2.74 7.46 -2.39 -0.02 2.72 16 14 C -0.14 -3.55 7.58 31.12 0.24 -3.31 16 15 C 0.15 5.44 4.56 45.52 0.21 5.65 16 16 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 17 N -0.74 -34.92 5.11 -320.45 -1.64 -36.56 16 18 C -0.23 -13.29 10.45 84.04 0.88 -12.41 16 19 H 0.06 4.00 8.06 -2.91 -0.02 3.97 16 20 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 21 N -0.98 -63.68 13.97 21.65 0.30 -63.38 16 22 Si 0.95 47.42 27.74 68.60 1.90 49.33 16 23 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.26 -12.57 6.52 99.48 0.65 -11.92 16 26 C -0.17 -5.52 7.68 31.12 0.24 -5.28 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.59 7.75 -2.39 -0.02 0.57 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.99 7.86 -2.39 -0.02 0.97 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.03 0.78 8.00 -2.39 -0.02 0.76 16 35 H 0.07 2.27 6.05 -2.39 -0.01 2.26 16 36 H 0.13 1.53 7.78 -2.39 -0.02 1.51 16 37 H 0.09 1.07 7.88 -2.39 -0.02 1.05 16 38 H 0.42 5.22 8.73 -92.71 -0.81 4.41 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.13 2.23 8.12 -2.39 -0.02 2.21 16 41 H 0.36 17.05 5.76 -92.71 -0.53 16.51 16 42 H 0.26 16.01 8.31 -92.72 -0.77 15.24 16 43 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.76 347.90 -1.54 -78.30 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.41 Total: 27.62 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.03 Total: -2.23 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -8.01 Total: -132.07 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.04 Total: -20.95 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.90 Total: 49.33 kcal Total: -76.76 -1.54 -78.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020585317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.726 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds