Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.62410 * 2 1 4 4 C 1.55136 * 110.70808 * 236.70382 * 2 1 3 5 5 C 1.54910 * 101.65131 * 205.96410 * 4 2 1 6 6 N 1.47839 * 104.79725 * 37.07211 * 5 4 2 7 7 C 1.46901 * 111.00094 * 213.63685 * 6 5 4 8 8 C 1.50701 * 109.46921 * 290.83999 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 H 1.09005 * 112.85572 * 336.20166 * 11 10 8 13 13 C 1.53780 * 113.61149 * 107.50858 * 11 10 8 14 14 C 1.53773 * 87.08433 * 89.11618 * 13 11 10 15 15 H 1.09007 * 113.61525 * 270.88375 * 14 13 11 16 16 N 1.46501 * 113.62074 * 139.98033 * 14 13 11 17 17 C 1.36935 * 120.00170 * 107.49747 * 16 14 13 18 18 H 1.08001 * 119.99921 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00156 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00068 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46798 * 89.99526 * 21 19 17 23 23 H 1.48493 * 109.47341 * 209.99841 * 21 19 17 24 24 H 1.48501 * 109.46819 * 330.00084 * 21 19 17 25 25 C 1.53777 * 113.61489 * 205.00300 * 11 10 8 26 26 C 1.47445 * 108.56660 * 335.90202 * 6 5 4 27 27 H 1.09001 * 109.47894 * 296.89275 * 1 2 3 28 28 H 1.09001 * 109.47169 * 56.90123 * 1 2 3 29 29 H 1.09009 * 109.47384 * 176.89413 * 1 2 3 30 30 H 1.08999 * 110.99026 * 324.05487 * 4 2 1 31 31 H 1.08998 * 110.99243 * 87.83089 * 4 2 1 32 32 H 1.08995 * 110.37196 * 278.24067 * 5 4 2 33 33 H 1.09005 * 110.37080 * 155.89665 * 5 4 2 34 34 H 1.09002 * 109.47401 * 170.84027 * 7 6 5 35 35 H 1.09001 * 109.46874 * 50.84040 * 7 6 5 36 36 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 37 37 H 1.09008 * 113.61406 * 203.66449 * 13 11 10 38 38 H 1.08993 * 113.61521 * 334.56060 * 13 11 10 39 39 H 0.96995 * 120.00068 * 287.50728 * 16 14 13 40 40 H 0.97000 * 120.00240 * 180.02562 * 20 19 17 41 41 H 1.09004 * 113.61607 * 25.42965 * 25 11 10 42 42 H 1.08997 * 113.61941 * 156.25638 * 25 11 10 43 43 H 1.09000 * 109.88966 * 120.39554 * 26 6 5 44 44 H 1.09004 * 109.88923 * 241.42291 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0786 -0.7966 -1.2129 5 6 3.4651 -1.2477 -0.6897 6 7 3.2489 -1.5489 0.7414 7 6 4.4405 -1.2190 1.5347 8 6 5.5502 -2.1814 1.1982 9 8 5.3667 -3.0558 0.3780 10 7 6.7470 -2.0699 1.8081 11 6 7.8259 -3.0052 1.4805 12 1 7.4596 -3.9509 1.0809 13 6 8.9534 -2.3766 0.6448 14 6 9.6192 -1.9919 1.9765 15 1 9.3067 -1.0189 2.3559 16 7 11.0742 -2.1633 1.9764 17 6 11.8929 -1.0661 1.9441 18 1 11.4660 -0.0744 1.9191 19 6 13.2714 -1.2286 1.9435 20 7 14.0584 -0.1740 1.9130 21 14 14.0098 -2.9439 1.9861 22 1 14.2004 -3.4353 0.5977 23 1 15.3217 -2.9011 2.6805 24 1 13.0942 -3.8590 2.7137 25 6 8.8600 -3.1715 2.6065 26 6 2.0756 -0.7884 1.2092 27 1 -0.3635 0.4648 0.9165 28 1 -0.3633 0.5612 -0.8609 29 1 -0.3634 -1.0262 -0.0557 30 1 1.4460 -1.6564 -1.4338 31 1 2.1806 -0.1546 -2.0879 32 1 4.1930 -0.4443 -0.8027 33 1 3.7984 -2.1403 -1.2192 34 1 4.2031 -1.2948 2.5958 35 1 4.7594 -0.2022 1.3055 36 1 6.8938 -1.3704 2.4638 37 1 9.5239 -3.1024 0.0651 38 1 8.6326 -1.5193 0.0533 39 1 11.4576 -3.0540 1.9991 40 1 15.0217 -0.2875 1.9122 41 1 8.4637 -2.9556 3.5987 42 1 9.4039 -4.1151 2.5640 43 1 1.3131 -1.4736 1.5797 44 1 2.3714 -0.1000 2.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020588464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = 3.021957 kcal Electronic energy + Delta-G solvation = -21889.128996 eV Core-core repulsion = 18649.311490 eV Total energy + Delta-G solvation = -3239.817506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25846 -39.16409 -37.77243 -34.12251 -33.60166 -32.55816 -30.55521 -30.01391 -27.83723 -25.39216 -25.23785 -24.34691 -22.06670 -21.51878 -20.62705 -20.44897 -19.17104 -17.55774 -17.33464 -16.43578 -15.74476 -15.42888 -15.23871 -14.84416 -14.38929 -14.17620 -13.97038 -13.70609 -13.36460 -13.18026 -13.02619 -12.64690 -12.34134 -12.21886 -12.13850 -12.01431 -11.99156 -11.60462 -11.21513 -11.06830 -11.01752 -10.91197 -10.84495 -10.40531 -10.22520 -9.90395 -9.70951 -9.59478 -8.95592 -8.81026 -8.52080 -7.30833 -5.81947 -3.17809 2.69717 3.04272 3.34823 3.37948 3.42991 3.83911 4.24551 4.38113 4.51569 4.54970 4.76446 4.91873 4.96210 5.05546 5.07566 5.10841 5.13817 5.17897 5.22635 5.26455 5.38646 5.40293 5.57680 5.60191 5.69161 5.70629 5.74677 5.78107 5.96186 5.99882 6.02352 6.11705 6.17905 6.44318 6.51240 6.57892 6.69120 6.71510 6.96796 7.61332 7.93617 8.33423 8.37732 9.15209 9.87934 10.07600 11.36177 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041042 B = 0.002723 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.058588 B =10281.202973 C =10494.875374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.046 3.954 6 N -0.512 5.512 7 C 0.030 3.970 8 C 0.514 3.486 9 O -0.525 6.525 10 N -0.711 5.711 11 C 0.119 3.881 12 H 0.096 0.904 13 C -0.176 4.176 14 C 0.173 3.827 15 H 0.081 0.919 16 N -0.737 5.737 17 C -0.249 4.249 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.163 4.163 26 C 0.045 3.955 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.057 -0.656 -0.942 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 H 0.093 0.907 4 C -0.164 4.164 5 C -0.081 4.081 6 N -0.236 5.236 7 C -0.101 4.101 8 C 0.300 3.700 9 O -0.400 6.400 10 N -0.363 5.363 11 C 0.013 3.987 12 H 0.114 0.886 13 C -0.218 4.218 14 C 0.061 3.939 15 H 0.099 0.901 16 N -0.376 5.376 17 C -0.379 4.379 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.202 4.202 26 C -0.082 4.082 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.132 -1.582 -1.458 26.220 hybrid contribution 1.043 0.120 0.303 1.093 sum -25.089 -1.462 -1.155 25.158 Atomic orbital electron populations 1.21728 0.94187 1.02140 1.01705 1.22389 0.96514 0.99198 0.95476 0.90697 1.22821 0.96491 0.99861 0.97254 1.23104 0.96246 1.00678 0.88111 1.63306 1.02299 1.55142 1.02868 1.22229 0.90848 0.97006 1.00064 1.20431 0.82842 0.85483 0.81288 1.90680 1.81572 1.34831 1.32921 1.45690 1.11862 1.34464 1.44243 1.21750 0.85892 0.93207 0.97821 0.88574 1.24265 0.96713 1.00917 0.99911 1.21604 0.83728 0.95762 0.92792 0.90077 1.42750 1.00724 1.05449 1.88718 1.19119 0.87911 0.87562 1.43329 0.89198 1.24703 0.95935 0.96673 1.01809 1.69702 1.03407 1.27689 1.57184 0.86540 0.78756 0.85316 0.77864 1.21000 1.21683 1.20268 1.23876 0.97182 1.01564 0.97624 1.22960 0.93120 0.95504 0.96632 0.92580 0.92548 0.92248 0.90488 0.90885 0.93864 0.88958 0.87958 0.91723 0.76612 0.89733 0.92087 0.80379 0.92995 0.91435 0.89309 0.90123 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.13 37.16 0.34 -0.47 16 2 C -0.12 -0.83 3.54 -88.80 -0.31 -1.14 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.03 6.52 -24.59 -0.16 -1.19 16 5 C 0.05 0.49 5.74 -2.30 -0.01 0.48 16 6 N -0.51 -5.46 4.86 -232.69 -1.13 -6.59 16 7 C 0.03 0.29 5.05 -4.97 -0.03 0.27 16 8 C 0.51 6.74 7.63 -10.98 -0.08 6.66 16 9 O -0.53 -8.91 14.64 5.56 0.08 -8.83 16 10 N -0.71 -8.68 5.26 -53.02 -0.28 -8.96 16 11 C 0.12 1.71 4.32 -67.12 -0.29 1.42 16 12 H 0.10 1.48 7.46 -51.93 -0.39 1.09 16 13 C -0.18 -2.94 7.68 -25.92 -0.20 -3.14 16 14 C 0.17 3.14 4.35 -67.12 -0.29 2.84 16 15 H 0.08 1.46 8.10 -51.92 -0.42 1.04 16 16 N -0.74 -17.01 5.21 -52.64 -0.27 -17.28 16 17 C -0.25 -6.92 10.45 -15.06 -0.16 -7.07 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 19 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 21 Si 0.89 21.90 27.74 -169.99 -4.71 17.19 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 25 C -0.16 -2.39 7.58 -25.92 -0.20 -2.59 16 26 C 0.05 0.36 6.46 -2.83 -0.02 0.35 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 8.11 -51.92 -0.42 -0.07 16 30 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.46 7.62 -51.93 -0.40 0.06 16 33 H 0.09 1.19 7.38 -51.93 -0.38 0.81 16 34 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 36 H 0.40 3.95 8.70 -40.82 -0.36 3.59 16 37 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.36 8.25 5.79 -40.82 -0.24 8.02 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 43 H 0.08 0.64 7.82 -51.93 -0.41 0.23 16 44 H 0.06 0.38 7.55 -51.93 -0.39 -0.01 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -33.08 350.28 -9.38 -42.46 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.61 Total: 8.53 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.51 Total: -3.55 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.91 Total: -61.08 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.08 -9.38 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020588464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.484 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds