Wall clock time and date at job start Tue Mar 31 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.62410 * 2 1 4 4 C 1.55136 * 110.70808 * 236.70382 * 2 1 3 5 5 C 1.54910 * 101.65131 * 205.96410 * 4 2 1 6 6 N 1.47839 * 104.79725 * 37.07211 * 5 4 2 7 7 C 1.46901 * 111.00094 * 213.63685 * 6 5 4 8 8 C 1.50701 * 109.46921 * 290.83999 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 H 1.09005 * 112.85572 * 336.20166 * 11 10 8 13 13 C 1.53780 * 113.61149 * 107.50858 * 11 10 8 14 14 C 1.53773 * 87.08433 * 89.11618 * 13 11 10 15 15 H 1.09007 * 113.61525 * 270.88375 * 14 13 11 16 16 N 1.46501 * 113.62074 * 139.98033 * 14 13 11 17 17 C 1.36935 * 120.00170 * 107.49747 * 16 14 13 18 18 H 1.08001 * 119.99921 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00156 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00068 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46798 * 89.99526 * 21 19 17 23 23 H 1.48493 * 109.47341 * 209.99841 * 21 19 17 24 24 H 1.48501 * 109.46819 * 330.00084 * 21 19 17 25 25 C 1.53777 * 113.61489 * 205.00300 * 11 10 8 26 26 C 1.47445 * 108.56660 * 335.90202 * 6 5 4 27 27 H 1.09001 * 109.47894 * 296.89275 * 1 2 3 28 28 H 1.09001 * 109.47169 * 56.90123 * 1 2 3 29 29 H 1.09009 * 109.47384 * 176.89413 * 1 2 3 30 30 H 1.08999 * 110.99026 * 324.05487 * 4 2 1 31 31 H 1.08998 * 110.99243 * 87.83089 * 4 2 1 32 32 H 1.08995 * 110.37196 * 278.24067 * 5 4 2 33 33 H 1.09005 * 110.37080 * 155.89665 * 5 4 2 34 34 H 1.09002 * 109.47401 * 170.84027 * 7 6 5 35 35 H 1.09001 * 109.46874 * 50.84040 * 7 6 5 36 36 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 37 37 H 1.09008 * 113.61406 * 203.66449 * 13 11 10 38 38 H 1.08993 * 113.61521 * 334.56060 * 13 11 10 39 39 H 0.96995 * 120.00068 * 287.50728 * 16 14 13 40 40 H 0.97000 * 120.00240 * 180.02562 * 20 19 17 41 41 H 1.09004 * 113.61607 * 25.42965 * 25 11 10 42 42 H 1.08997 * 113.61941 * 156.25638 * 25 11 10 43 43 H 1.09000 * 109.88966 * 120.39554 * 26 6 5 44 44 H 1.09004 * 109.88923 * 241.42291 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0786 -0.7966 -1.2129 5 6 3.4651 -1.2477 -0.6897 6 7 3.2489 -1.5489 0.7414 7 6 4.4405 -1.2190 1.5347 8 6 5.5502 -2.1814 1.1982 9 8 5.3667 -3.0558 0.3780 10 7 6.7470 -2.0699 1.8081 11 6 7.8259 -3.0052 1.4805 12 1 7.4596 -3.9509 1.0809 13 6 8.9534 -2.3766 0.6448 14 6 9.6192 -1.9919 1.9765 15 1 9.3067 -1.0189 2.3559 16 7 11.0742 -2.1633 1.9764 17 6 11.8929 -1.0661 1.9441 18 1 11.4660 -0.0744 1.9191 19 6 13.2714 -1.2286 1.9435 20 7 14.0584 -0.1740 1.9130 21 14 14.0098 -2.9439 1.9861 22 1 14.2004 -3.4353 0.5977 23 1 15.3217 -2.9011 2.6805 24 1 13.0942 -3.8590 2.7137 25 6 8.8600 -3.1715 2.6065 26 6 2.0756 -0.7884 1.2092 27 1 -0.3635 0.4648 0.9165 28 1 -0.3633 0.5612 -0.8609 29 1 -0.3634 -1.0262 -0.0557 30 1 1.4460 -1.6564 -1.4338 31 1 2.1806 -0.1546 -2.0879 32 1 4.1930 -0.4443 -0.8027 33 1 3.7984 -2.1403 -1.2192 34 1 4.2031 -1.2948 2.5958 35 1 4.7594 -0.2022 1.3055 36 1 6.8938 -1.3704 2.4638 37 1 9.5239 -3.1024 0.0651 38 1 8.6326 -1.5193 0.0533 39 1 11.4576 -3.0540 1.9991 40 1 15.0217 -0.2875 1.9122 41 1 8.4637 -2.9556 3.5987 42 1 9.4039 -4.1151 2.5640 43 1 1.3131 -1.4736 1.5797 44 1 2.3714 -0.1000 2.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020588464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:23 Heat of formation + Delta-G solvation = -21.366357 kcal Electronic energy + Delta-G solvation = -21890.186553 eV Core-core repulsion = 18649.311490 eV Total energy + Delta-G solvation = -3240.875062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30189 -40.12155 -38.91655 -35.83751 -34.36873 -33.99204 -32.41106 -30.74250 -28.62344 -26.58488 -26.45156 -25.65389 -23.64216 -22.47153 -21.51965 -21.10356 -20.63466 -19.43234 -18.34054 -17.38951 -16.90175 -16.47964 -16.42433 -16.05153 -15.93091 -15.22991 -14.89710 -14.63128 -14.60961 -14.26464 -14.06524 -13.97147 -13.71548 -13.50596 -13.34031 -12.97443 -12.87804 -12.62974 -12.58289 -12.32628 -12.05212 -11.86674 -11.82251 -11.80516 -11.63539 -11.51146 -11.24121 -10.89585 -10.77250 -9.99266 -9.29115 -9.26809 -8.03071 -5.36203 1.38320 1.41528 1.48637 1.67594 2.08277 2.48257 3.07191 3.26991 3.61049 3.63784 3.69814 3.72959 3.81233 3.90469 3.99739 4.23794 4.25487 4.29705 4.32643 4.38287 4.54990 4.62292 4.64580 4.70876 4.86409 4.87696 4.92341 4.93214 5.05193 5.11001 5.12361 5.16841 5.19510 5.25096 5.29367 5.47514 5.68427 5.76743 5.92986 6.02955 6.22128 6.64415 7.07299 7.33458 7.84462 8.02801 9.18264 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041042 B = 0.002723 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.058588 B =10281.202973 C =10494.875374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.046 3.954 6 N -0.534 5.534 7 C 0.035 3.965 8 C 0.511 3.489 9 O -0.568 6.568 10 N -0.702 5.702 11 C 0.135 3.865 12 H 0.091 0.909 13 C -0.174 4.174 14 C 0.156 3.844 15 H 0.081 0.919 16 N -0.742 5.742 17 C -0.233 4.233 18 H 0.059 0.941 19 C -0.067 4.067 20 N -0.984 5.984 21 Si 0.954 3.046 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.248 1.248 25 C -0.142 4.142 26 C 0.045 3.955 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.414 0.586 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.367 0.633 40 H 0.257 0.743 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.004 -1.405 0.201 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.099 0.901 4 C -0.161 4.161 5 C -0.082 4.082 6 N -0.259 5.259 7 C -0.096 4.096 8 C 0.298 3.702 9 O -0.446 6.446 10 N -0.355 5.355 11 C 0.028 3.972 12 H 0.109 0.891 13 C -0.216 4.216 14 C 0.047 3.953 15 H 0.099 0.901 16 N -0.383 5.383 17 C -0.364 4.364 18 H 0.077 0.923 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.782 3.218 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.172 1.172 25 C -0.181 4.181 26 C -0.082 4.082 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.156 -2.335 -0.288 28.254 hybrid contribution 1.553 0.419 -0.090 1.611 sum -26.603 -1.916 -0.379 26.674 Atomic orbital electron populations 1.21702 0.93100 1.02146 1.02484 1.22377 0.97350 0.99051 0.94261 0.90082 1.22798 0.95000 1.00070 0.98187 1.22987 0.97533 0.99093 0.88537 1.63223 1.03356 1.56497 1.02792 1.22271 0.89440 0.96543 1.01351 1.21101 0.83454 0.85312 0.80284 1.90670 1.82328 1.36792 1.34792 1.45617 1.11197 1.34366 1.44309 1.21470 0.85796 0.93098 0.96850 0.89132 1.24166 0.97645 1.00625 0.99188 1.21944 0.81401 0.97579 0.94417 0.90065 1.42762 1.02315 1.04191 1.89026 1.19106 0.88487 0.87803 1.40978 0.92309 1.25531 0.96564 1.00915 1.02773 1.69883 1.03494 1.30338 1.59736 0.85417 0.77804 0.80635 0.77985 1.20843 1.22357 1.17237 1.23703 0.95964 0.99868 0.98606 1.23017 0.92097 0.95711 0.97361 0.91592 0.92023 0.92615 0.90918 0.89974 0.94184 0.92120 0.85291 0.89973 0.74965 0.90456 0.92978 0.79963 0.93396 0.89152 0.88717 0.90109 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.13 71.98 0.66 -0.62 16 2 C -0.11 -1.34 3.54 -9.61 -0.03 -1.38 16 3 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -1.88 6.52 31.98 0.21 -1.67 16 5 C 0.05 0.97 5.74 86.78 0.50 1.47 16 6 N -0.53 -10.63 4.86 -890.08 -4.33 -14.95 16 7 C 0.04 0.60 5.05 85.56 0.43 1.04 16 8 C 0.51 12.68 7.63 87.66 0.67 13.35 16 9 O -0.57 -19.14 14.64 -3.03 -0.04 -19.18 16 10 N -0.70 -15.69 5.26 -440.04 -2.32 -18.01 16 11 C 0.13 3.61 4.32 45.52 0.20 3.81 16 12 H 0.09 2.64 7.46 -2.38 -0.02 2.62 16 13 C -0.17 -5.67 7.68 31.12 0.24 -5.43 16 14 C 0.16 5.43 4.35 45.52 0.20 5.63 16 15 H 0.08 2.82 8.10 -2.38 -0.02 2.80 16 16 N -0.74 -33.37 5.21 -320.45 -1.67 -35.03 16 17 C -0.23 -12.99 10.45 84.03 0.88 -12.12 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.98 -62.77 13.97 21.65 0.30 -62.47 16 21 Si 0.95 45.07 27.74 68.60 1.90 46.97 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 25 C -0.14 -3.77 7.58 31.12 0.24 -3.53 16 26 C 0.05 0.62 6.46 86.65 0.56 1.18 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.57 8.11 -2.38 -0.02 0.55 16 30 H 0.07 1.17 8.02 -2.39 -0.02 1.15 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.84 7.62 -2.39 -0.02 0.82 16 33 H 0.06 1.64 7.38 -2.38 -0.02 1.62 16 34 H 0.13 1.53 8.03 -2.39 -0.02 1.52 16 35 H 0.08 1.16 7.85 -2.39 -0.02 1.14 16 36 H 0.41 7.02 8.70 -92.71 -0.81 6.21 16 37 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.37 15.85 5.79 -92.71 -0.54 15.31 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.09 2.47 8.12 -2.39 -0.02 2.46 16 43 H 0.08 1.11 7.82 -2.39 -0.02 1.09 16 44 H 0.07 0.75 7.55 -2.38 -0.02 0.73 16 Total: -1.00 -73.01 350.28 -1.36 -74.37 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.42 Total: 30.02 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.21 Total: -1.71 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -8.01 Total: -130.47 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.04 Total: -19.18 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Total: -73.01 -1.36 -74.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020588464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.002 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds