Wall clock time and date at job start Tue Mar 31 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.63093 * 2 1 4 4 C 1.55144 * 110.70677 * 123.10392 * 2 1 3 5 5 C 1.55112 * 101.55991 * 153.90752 * 4 2 1 6 6 N 1.47839 * 104.90544 * 323.16005 * 5 4 2 7 7 C 1.46904 * 111.00059 * 146.24078 * 6 5 4 8 8 C 1.50701 * 109.47148 * 49.15955 * 7 6 5 9 9 O 1.21281 * 119.99879 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99866 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99701 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.85018 * 336.19958 * 11 10 8 13 13 C 1.53783 * 113.61091 * 107.50352 * 11 10 8 14 14 C 1.53784 * 87.07964 * 89.11461 * 13 11 10 15 15 H 1.08997 * 113.69564 * 270.87249 * 14 13 11 16 16 N 1.46505 * 113.61217 * 139.98026 * 14 13 11 17 17 C 1.36932 * 120.00035 * 107.50663 * 16 14 13 18 18 H 1.07998 * 120.00140 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99987 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46767 * 60.00096 * 21 19 17 23 23 H 1.48500 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47162 * 299.99953 * 21 19 17 25 25 C 1.53783 * 87.08398 * 25.43229 * 14 13 11 26 26 C 1.47440 * 108.57006 * 23.97355 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.69968 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.70159 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.70140 * 1 2 3 30 30 H 1.09005 * 110.99114 * 272.12950 * 4 2 1 31 31 H 1.08996 * 110.98905 * 35.94468 * 4 2 1 32 32 H 1.08998 * 110.42487 * 204.24263 * 5 4 2 33 33 H 1.09000 * 110.31089 * 82.01794 * 5 4 2 34 34 H 1.09002 * 109.47314 * 169.15593 * 7 6 5 35 35 H 1.08996 * 109.47101 * 289.15555 * 7 6 5 36 36 H 0.97003 * 120.00276 * 359.97438 * 10 8 7 37 37 H 1.08995 * 113.61629 * 203.66218 * 13 11 10 38 38 H 1.08997 * 113.61457 * 334.56885 * 13 11 10 39 39 H 0.96999 * 119.99671 * 287.49598 * 16 14 13 40 40 H 0.96996 * 120.00213 * 179.97438 * 20 19 17 41 41 H 1.08994 * 113.61372 * 220.02116 * 25 14 13 42 42 H 1.08999 * 113.61431 * 89.11109 * 25 14 13 43 43 H 1.09004 * 109.89189 * 239.60563 * 26 6 5 44 44 H 1.08997 * 110.02866 * 118.49224 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0202 0.0000 4 6 2.0785 -0.7926 1.2157 5 6 3.4651 -1.2477 0.6899 6 7 3.2490 -1.5489 -0.7412 7 6 4.4407 -1.2190 -1.5344 8 6 5.6599 -1.8184 -0.8823 9 8 5.5473 -2.4570 0.1426 10 7 6.8755 -1.6438 -1.4374 11 6 8.0609 -2.2260 -0.8031 12 1 7.9258 -2.4038 0.2638 13 6 8.6357 -3.4333 -1.5628 14 6 9.4880 -2.4286 -2.3560 15 1 8.9975 -2.0500 -3.2527 16 7 10.8559 -2.8890 -2.6070 17 6 11.2271 -3.2780 -3.8664 18 1 10.5113 -3.2458 -4.6745 19 6 12.5234 -3.7138 -4.1044 20 7 13.3959 -3.7526 -3.1197 21 14 13.0295 -4.2452 -5.8223 22 1 12.8542 -3.1099 -6.7632 23 1 14.4542 -4.6641 -5.8111 24 1 12.1824 -5.3845 -6.2577 25 6 9.3668 -1.4891 -1.1445 26 6 2.0757 -0.7884 -1.2091 27 1 -0.3633 -1.0276 0.0125 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 0.5247 0.8837 30 1 2.1812 -0.1475 2.0883 31 1 1.4459 -1.6516 1.4393 32 1 3.7984 -2.1403 1.2194 33 1 4.1945 -0.4457 0.8030 34 1 4.3309 -1.6236 -2.5406 35 1 4.5528 -0.1362 -1.5885 36 1 6.9657 -1.1327 -2.2569 37 1 9.2226 -4.1045 -0.9359 38 1 7.8989 -3.9571 -2.1716 39 1 11.4987 -2.9181 -1.8812 40 1 14.3016 -4.0574 -3.2859 41 1 9.2202 -0.4437 -1.4156 42 1 10.1536 -1.6289 -0.4031 43 1 1.3132 -1.4736 -1.5797 44 1 2.3694 -0.0981 -1.9999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020588465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:26 Heat of formation + Delta-G solvation = 1.469603 kcal Electronic energy + Delta-G solvation = -21886.565169 eV Core-core repulsion = 18646.680348 eV Total energy + Delta-G solvation = -3239.884821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35285 -39.06326 -37.67193 -34.04465 -33.54152 -32.59016 -30.15902 -29.76924 -27.78130 -25.31135 -25.12388 -24.32122 -22.31646 -21.52411 -20.57358 -20.46429 -18.94069 -17.38954 -17.04045 -16.39852 -15.69615 -15.47478 -15.29526 -14.78664 -14.18671 -14.01088 -13.88584 -13.78604 -13.43541 -13.30049 -12.83349 -12.65524 -12.46515 -12.06126 -11.98800 -11.85887 -11.63372 -11.58485 -11.13491 -11.03391 -10.90032 -10.89343 -10.75651 -10.31377 -10.25244 -9.92041 -9.59078 -9.54047 -8.91390 -8.77561 -8.48683 -6.99362 -5.80730 -3.09888 2.66715 3.08621 3.41655 3.46273 3.47257 3.84592 4.28679 4.41924 4.54483 4.56743 4.76916 4.96663 5.04748 5.09608 5.12642 5.16321 5.21032 5.23451 5.27857 5.41458 5.44172 5.49589 5.61825 5.65064 5.73621 5.81842 5.86361 5.91565 6.04236 6.10431 6.17151 6.24335 6.32289 6.52398 6.62895 6.69840 6.73767 6.76959 7.08716 7.61297 7.65760 8.31596 8.37616 9.48726 10.06130 10.40506 11.41484 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045650 B = 0.002617 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.220658 B =10695.774653 C =11052.333819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 H 0.073 0.927 4 C -0.131 4.131 5 C 0.052 3.948 6 N -0.514 5.514 7 C 0.030 3.970 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.708 5.708 11 C 0.117 3.883 12 H 0.095 0.905 13 C -0.175 4.175 14 C 0.167 3.833 15 H 0.073 0.927 16 N -0.712 5.712 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.159 4.159 26 C 0.045 3.955 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.400 0.600 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.329 9.847 5.748 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 H 0.091 0.909 4 C -0.169 4.169 5 C -0.075 4.075 6 N -0.239 5.239 7 C -0.101 4.101 8 C 0.298 3.702 9 O -0.405 6.405 10 N -0.359 5.359 11 C 0.011 3.989 12 H 0.113 0.887 13 C -0.218 4.218 14 C 0.055 3.945 15 H 0.091 0.909 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.199 4.199 26 C -0.083 4.083 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.234 0.766 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.408 8.796 6.219 25.768 hybrid contribution 0.844 0.792 -1.136 1.622 sum -22.564 9.588 5.083 25.039 Atomic orbital electron populations 1.21727 0.94247 1.02131 1.01637 1.22392 0.96450 0.99159 0.95622 0.90880 1.22931 0.97050 0.99785 0.97121 1.23167 0.95227 1.01108 0.87952 1.63504 1.02196 1.54963 1.03223 1.22278 0.89540 0.99188 0.99140 1.20430 0.84265 0.80580 0.84932 1.90676 1.85624 1.40185 1.24028 1.45699 1.06298 1.55238 1.28639 1.21804 0.83599 0.95922 0.97531 0.88718 1.24295 0.99860 0.97495 1.00126 1.21618 0.87297 0.92028 0.93593 0.90889 1.42396 1.06894 1.76380 1.09347 1.19241 0.95061 1.36263 0.87129 0.91178 1.24777 0.96342 1.02143 0.97610 1.69647 1.04602 1.53152 1.30574 0.86257 0.77420 0.78462 0.83974 1.21236 1.21659 1.21210 1.23862 0.95916 0.99138 1.01022 1.22983 0.93245 0.95503 0.96565 0.92234 0.92647 0.92584 0.91035 0.90604 0.88045 0.94253 0.87714 0.91962 0.76630 0.89631 0.92398 0.78012 0.93365 0.91849 0.89075 0.90094 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.13 37.16 0.34 -0.50 16 2 C -0.12 -0.87 3.53 -88.80 -0.31 -1.18 16 3 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 4 C -0.13 -1.12 6.54 -24.48 -0.16 -1.28 16 5 C 0.05 0.59 4.95 -2.19 -0.01 0.58 16 6 N -0.51 -5.64 5.21 -232.56 -1.21 -6.85 16 7 C 0.03 0.30 5.32 -4.97 -0.03 0.27 16 8 C 0.51 6.80 7.35 -10.99 -0.08 6.72 16 9 O -0.53 -8.87 13.15 5.56 0.07 -8.80 16 10 N -0.71 -8.90 5.26 -53.01 -0.28 -9.18 16 11 C 0.12 1.76 4.32 -67.11 -0.29 1.47 16 12 H 0.09 1.51 7.46 -51.93 -0.39 1.12 16 13 C -0.18 -3.11 7.68 -25.92 -0.20 -3.30 16 14 C 0.17 3.18 4.36 -67.11 -0.29 2.88 16 15 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 16 N -0.71 -17.56 5.40 -52.63 -0.28 -17.85 16 17 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.16 -2.50 7.58 -25.92 -0.20 -2.70 16 26 C 0.04 0.37 6.47 -2.84 -0.02 0.35 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 32 H 0.10 1.39 6.71 -51.93 -0.35 1.04 16 33 H 0.04 0.46 7.53 -51.93 -0.39 0.07 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.51 7.96 -51.93 -0.41 0.10 16 36 H 0.40 4.09 8.70 -40.82 -0.36 3.73 16 37 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.39 10.11 7.92 -40.82 -0.32 9.79 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.48 8.12 -51.93 -0.42 1.05 16 43 H 0.08 0.66 7.82 -51.93 -0.41 0.25 16 44 H 0.05 0.39 7.50 -51.93 -0.39 0.00 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -31.74 350.94 -9.83 -41.58 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.62 Total: 9.90 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.03 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -1.05 Total: -61.10 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.74 -9.83 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020588465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.045 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds