Wall clock time and date at job start Tue Mar 31 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.63093 * 2 1 4 4 C 1.55144 * 110.70677 * 123.10392 * 2 1 3 5 5 C 1.55112 * 101.55991 * 153.90752 * 4 2 1 6 6 N 1.47839 * 104.90544 * 323.16005 * 5 4 2 7 7 C 1.46904 * 111.00059 * 146.24078 * 6 5 4 8 8 C 1.50701 * 109.47148 * 49.15955 * 7 6 5 9 9 O 1.21281 * 119.99879 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99866 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99701 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.85018 * 336.19958 * 11 10 8 13 13 C 1.53783 * 113.61091 * 107.50352 * 11 10 8 14 14 C 1.53784 * 87.07964 * 89.11461 * 13 11 10 15 15 H 1.08997 * 113.69564 * 270.87249 * 14 13 11 16 16 N 1.46505 * 113.61217 * 139.98026 * 14 13 11 17 17 C 1.36932 * 120.00035 * 107.50663 * 16 14 13 18 18 H 1.07998 * 120.00140 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99987 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46767 * 60.00096 * 21 19 17 23 23 H 1.48500 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47162 * 299.99953 * 21 19 17 25 25 C 1.53783 * 87.08398 * 25.43229 * 14 13 11 26 26 C 1.47440 * 108.57006 * 23.97355 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.69968 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.70159 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.70140 * 1 2 3 30 30 H 1.09005 * 110.99114 * 272.12950 * 4 2 1 31 31 H 1.08996 * 110.98905 * 35.94468 * 4 2 1 32 32 H 1.08998 * 110.42487 * 204.24263 * 5 4 2 33 33 H 1.09000 * 110.31089 * 82.01794 * 5 4 2 34 34 H 1.09002 * 109.47314 * 169.15593 * 7 6 5 35 35 H 1.08996 * 109.47101 * 289.15555 * 7 6 5 36 36 H 0.97003 * 120.00276 * 359.97438 * 10 8 7 37 37 H 1.08995 * 113.61629 * 203.66218 * 13 11 10 38 38 H 1.08997 * 113.61457 * 334.56885 * 13 11 10 39 39 H 0.96999 * 119.99671 * 287.49598 * 16 14 13 40 40 H 0.96996 * 120.00213 * 179.97438 * 20 19 17 41 41 H 1.08994 * 113.61372 * 220.02116 * 25 14 13 42 42 H 1.08999 * 113.61431 * 89.11109 * 25 14 13 43 43 H 1.09004 * 109.89189 * 239.60563 * 26 6 5 44 44 H 1.08997 * 110.02866 * 118.49224 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0202 0.0000 4 6 2.0785 -0.7926 1.2157 5 6 3.4651 -1.2477 0.6899 6 7 3.2490 -1.5489 -0.7412 7 6 4.4407 -1.2190 -1.5344 8 6 5.6599 -1.8184 -0.8823 9 8 5.5473 -2.4570 0.1426 10 7 6.8755 -1.6438 -1.4374 11 6 8.0609 -2.2260 -0.8031 12 1 7.9258 -2.4038 0.2638 13 6 8.6357 -3.4333 -1.5628 14 6 9.4880 -2.4286 -2.3560 15 1 8.9975 -2.0500 -3.2527 16 7 10.8559 -2.8890 -2.6070 17 6 11.2271 -3.2780 -3.8664 18 1 10.5113 -3.2458 -4.6745 19 6 12.5234 -3.7138 -4.1044 20 7 13.3959 -3.7526 -3.1197 21 14 13.0295 -4.2452 -5.8223 22 1 12.8542 -3.1099 -6.7632 23 1 14.4542 -4.6641 -5.8111 24 1 12.1824 -5.3845 -6.2577 25 6 9.3668 -1.4891 -1.1445 26 6 2.0757 -0.7884 -1.2091 27 1 -0.3633 -1.0276 0.0125 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 0.5247 0.8837 30 1 2.1812 -0.1475 2.0883 31 1 1.4459 -1.6516 1.4393 32 1 3.7984 -2.1403 1.2194 33 1 4.1945 -0.4457 0.8030 34 1 4.3309 -1.6236 -2.5406 35 1 4.5528 -0.1362 -1.5885 36 1 6.9657 -1.1327 -2.2569 37 1 9.2226 -4.1045 -0.9359 38 1 7.8989 -3.9571 -2.1716 39 1 11.4987 -2.9181 -1.8812 40 1 14.3016 -4.0574 -3.2859 41 1 9.2202 -0.4437 -1.4156 42 1 10.1536 -1.6289 -0.4031 43 1 1.3132 -1.4736 -1.5797 44 1 2.3694 -0.0981 -1.9999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020588465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:26 Heat of formation + Delta-G solvation = -21.499209 kcal Electronic energy + Delta-G solvation = -21887.561171 eV Core-core repulsion = 18646.680348 eV Total energy + Delta-G solvation = -3240.880823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40223 -40.10937 -38.82147 -35.76290 -34.34167 -33.98668 -31.85290 -30.67217 -28.59295 -26.57912 -26.43467 -25.69089 -23.84480 -22.46990 -21.54710 -21.09476 -20.35641 -19.15697 -18.24787 -17.37364 -16.84557 -16.61254 -16.41496 -16.06344 -15.65503 -15.44669 -14.82809 -14.75350 -14.60712 -14.19160 -13.95597 -13.62608 -13.45999 -13.40352 -13.32789 -13.06668 -12.77013 -12.62231 -12.59732 -12.32732 -12.21185 -11.84573 -11.79703 -11.68940 -11.62681 -11.53920 -11.19683 -10.83558 -10.62846 -9.99546 -9.26246 -8.99031 -7.94546 -5.23240 1.47950 1.50796 1.56763 1.62902 2.07557 2.56850 3.06562 3.36663 3.62196 3.69512 3.73164 3.83806 3.94021 3.96243 3.97214 4.27281 4.32829 4.33414 4.36856 4.42479 4.58054 4.63249 4.66265 4.73701 4.87893 4.90816 4.92006 4.97011 5.06259 5.13017 5.14716 5.20570 5.23015 5.30103 5.32386 5.48260 5.50874 5.72505 5.94296 6.04979 6.27239 6.61557 7.29873 7.33388 8.10145 8.32444 9.28477 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045650 B = 0.002617 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.220658 B =10695.774653 C =11052.333819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.127 4.127 5 C 0.056 3.944 6 N -0.536 5.536 7 C 0.036 3.964 8 C 0.509 3.491 9 O -0.568 6.568 10 N -0.698 5.698 11 C 0.137 3.863 12 H 0.087 0.913 13 C -0.173 4.173 14 C 0.154 3.846 15 H 0.085 0.915 16 N -0.728 5.728 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.280 1.280 25 C -0.142 4.142 26 C 0.044 3.956 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.414 0.586 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.382 11.505 4.422 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.098 0.902 4 C -0.165 4.165 5 C -0.072 4.072 6 N -0.261 5.261 7 C -0.095 4.095 8 C 0.296 3.704 9 O -0.447 6.447 10 N -0.350 5.350 11 C 0.030 3.970 12 H 0.105 0.895 13 C -0.215 4.215 14 C 0.044 3.956 15 H 0.103 0.897 16 N -0.365 5.365 17 C -0.376 4.376 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.206 1.206 25 C -0.182 4.182 26 C -0.083 4.083 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.531 10.491 4.864 28.028 hybrid contribution 1.392 0.265 -0.681 1.572 sum -24.139 10.756 4.183 26.756 Atomic orbital electron populations 1.21701 0.93110 1.02152 1.02452 1.22380 0.97328 0.99028 0.94318 0.90189 1.22902 0.95487 1.00028 0.98102 1.22978 0.96444 0.99301 0.88443 1.63442 1.03285 1.56364 1.03056 1.22320 0.87501 1.00511 0.99187 1.21102 0.85082 0.79806 0.84379 1.90683 1.86193 1.41939 1.25869 1.45585 1.05444 1.54977 1.29040 1.21445 0.84353 0.94283 0.96919 0.89511 1.24149 0.99507 0.97888 0.99998 1.21961 0.84898 0.93358 0.95352 0.89739 1.42603 1.08785 1.76945 1.08186 1.19673 0.95104 1.34524 0.88334 0.90329 1.25597 0.96725 1.03440 1.01263 1.69810 1.04619 1.55100 1.32543 0.85217 0.76427 0.78299 0.79851 1.20054 1.22422 1.20615 1.23664 0.95829 0.99824 0.98844 1.23045 0.92223 0.95739 0.97292 0.92619 0.91595 0.92037 0.90149 0.91008 0.91409 0.94970 0.85817 0.89317 0.74866 0.91474 0.92723 0.79435 0.94065 0.89431 0.89709 0.90032 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.13 71.98 0.66 -0.65 16 2 C -0.11 -1.38 3.53 -9.61 -0.03 -1.42 16 3 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 4 C -0.13 -2.04 6.54 32.05 0.21 -1.83 16 5 C 0.06 1.23 4.95 86.85 0.43 1.66 16 6 N -0.54 -10.90 5.21 -889.68 -4.63 -15.53 16 7 C 0.04 0.62 5.32 85.56 0.45 1.08 16 8 C 0.51 12.76 7.35 87.66 0.64 13.40 16 9 O -0.57 -19.06 13.15 -3.03 -0.04 -19.10 16 10 N -0.70 -16.11 5.26 -440.01 -2.32 -18.42 16 11 C 0.14 3.95 4.32 45.52 0.20 4.15 16 12 H 0.09 2.74 7.46 -2.39 -0.02 2.72 16 13 C -0.17 -6.09 7.68 31.12 0.24 -5.85 16 14 C 0.15 5.71 4.36 45.52 0.20 5.91 16 15 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 16 N -0.73 -35.96 5.40 -320.44 -1.73 -37.69 16 17 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 20 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 21 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 C -0.14 -4.24 7.58 31.12 0.24 -4.00 16 26 C 0.04 0.62 6.47 86.65 0.56 1.18 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.07 1.94 6.71 -2.39 -0.02 1.92 16 33 H 0.03 0.73 7.53 -2.39 -0.02 0.71 16 34 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 1.11 7.96 -2.39 -0.02 1.10 16 36 H 0.41 7.18 8.70 -92.71 -0.81 6.37 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.37 19.97 7.92 -92.71 -0.73 19.24 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 43 H 0.08 1.14 7.82 -2.38 -0.02 1.12 16 44 H 0.07 0.77 7.50 -2.39 -0.02 0.75 16 Total: -1.00 -69.23 350.94 -1.87 -71.10 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.55 Total: 33.73 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.10 Total: -2.85 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -8.40 Total: -130.60 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.04 Total: -19.10 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.23 -1.87 -71.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020588465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.604 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds