Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47840 * 110.99992 * 2 1 4 4 C 1.54906 * 104.79740 * 146.36180 * 3 2 1 5 5 C 1.55137 * 101.65340 * 322.92990 * 4 3 2 6 6 H 1.09002 * 110.70628 * 277.26996 * 5 4 3 7 7 C 1.53002 * 110.85664 * 154.10308 * 5 4 3 8 8 C 1.50696 * 109.47456 * 177.50859 * 7 5 4 9 9 O 1.21284 * 119.99814 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00238 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99889 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.84715 * 334.66790 * 11 10 8 13 13 C 1.53779 * 113.61158 * 105.86317 * 11 10 8 14 14 C 1.54054 * 86.98248 * 89.16388 * 13 11 10 15 15 H 1.09006 * 113.60736 * 270.88132 * 14 13 11 16 16 N 1.46498 * 113.69385 * 139.99180 * 14 13 11 17 17 C 1.36940 * 120.00222 * 107.46540 * 16 14 13 18 18 H 1.07993 * 119.99884 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99855 * 179.97438 * 17 16 14 20 20 N 1.31611 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47078 * 119.99917 * 21 19 17 24 24 H 1.48496 * 109.46952 * 240.00251 * 21 19 17 25 25 C 1.53775 * 87.07858 * 25.42839 * 14 13 11 26 26 C 1.47441 * 110.99858 * 120.83939 * 2 1 3 27 27 H 1.09001 * 109.47316 * 299.15787 * 1 2 3 28 28 H 1.08996 * 109.47481 * 59.15617 * 1 2 3 29 29 H 1.08998 * 109.47102 * 179.16121 * 1 2 3 30 30 H 1.09005 * 110.37368 * 265.19482 * 3 2 1 31 31 H 1.08999 * 110.37573 * 27.42304 * 3 2 1 32 32 H 1.09002 * 110.99368 * 204.83396 * 4 3 2 33 33 H 1.08999 * 110.98835 * 81.02106 * 4 3 2 34 34 H 1.08999 * 109.46889 * 297.51152 * 7 5 4 35 35 H 1.09003 * 109.47132 * 57.50899 * 7 5 4 36 36 H 0.96994 * 119.99844 * 0.02562 * 10 8 7 37 37 H 1.09000 * 113.60787 * 203.66222 * 13 11 10 38 38 H 1.08996 * 113.61972 * 334.56729 * 13 11 10 39 39 H 0.97002 * 119.99565 * 287.45516 * 16 14 13 40 40 H 0.97003 * 120.00336 * 179.97438 * 20 19 17 41 41 H 1.08997 * 113.61428 * 220.02290 * 25 14 13 42 42 H 1.08995 * 113.61460 * 89.12296 * 25 14 13 43 43 H 1.09008 * 109.88448 * 117.33501 * 26 2 1 44 44 H 1.08999 * 110.02918 * 356.22656 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3743 0.7747 2.7392 7 6 4.1548 -0.4347 2.4718 8 6 3.7496 -1.3720 3.5800 9 8 2.5846 -1.4578 3.9060 10 7 4.6820 -2.1141 4.2096 11 6 4.2879 -3.0258 5.2866 12 1 3.3645 -2.7233 5.7805 13 6 4.3111 -4.5082 4.8782 14 6 5.7838 -4.5255 5.3302 15 1 6.4859 -4.2573 4.5407 16 7 6.1670 -5.7477 6.0412 17 6 6.9724 -6.6714 5.4302 18 1 7.3248 -6.4991 4.4240 19 6 7.3359 -7.8292 6.1041 20 7 6.9061 -8.0395 7.3302 21 14 8.4341 -9.0896 5.2703 22 1 8.7773 -8.6201 3.9039 23 1 9.6790 -9.2618 6.0613 24 1 7.7193 -10.3882 5.1831 25 6 5.4293 -3.3555 6.2630 26 6 1.9973 -0.7056 1.1819 27 1 -0.3634 0.5007 0.8974 28 1 -0.3634 0.5268 -0.8823 29 1 -0.3633 -1.0275 -0.0150 30 1 2.2147 1.7038 -1.0183 31 1 1.2881 2.0595 0.4706 32 1 3.5495 2.2720 1.2640 33 1 4.1301 0.9282 0.2243 34 1 4.6248 -1.0028 1.6690 35 1 4.8607 0.3008 2.8578 36 1 5.6139 -2.0446 3.9496 37 1 3.6608 -5.1383 5.4849 38 1 4.1793 -4.6684 3.8082 39 1 5.8503 -5.9026 6.9449 40 1 7.1598 -8.8487 7.8011 41 1 6.1996 -2.5859 6.3101 42 1 5.0842 -3.6712 7.2475 43 1 2.5697 -1.5785 0.8674 44 1 1.1771 -1.0142 1.8301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020925100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -6.034181 kcal Electronic energy + Delta-G solvation = -21887.666176 eV Core-core repulsion = 18647.455967 eV Total energy + Delta-G solvation = -3240.210209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24744 -39.09786 -37.79190 -34.03240 -33.53631 -32.53935 -30.29836 -29.75928 -27.48608 -25.39441 -25.13286 -24.35167 -22.28317 -21.31264 -21.14978 -20.04770 -18.93648 -17.28939 -16.98788 -16.52704 -15.83048 -15.45877 -15.21126 -14.87964 -14.25821 -14.21851 -13.89332 -13.67059 -13.45526 -13.16609 -12.90202 -12.67427 -12.26462 -11.94360 -11.86262 -11.83142 -11.68822 -11.57187 -11.39744 -11.00883 -10.92895 -10.88847 -10.78290 -10.32497 -10.20459 -9.92949 -9.72382 -9.57400 -8.92793 -8.77370 -8.55056 -6.99806 -5.81673 -3.10724 2.68692 3.22187 3.40550 3.46260 3.48516 3.80058 4.28316 4.39986 4.56201 4.59527 4.80152 4.98932 5.01898 5.09832 5.18645 5.19813 5.22963 5.27491 5.40336 5.43470 5.45121 5.49223 5.49797 5.62272 5.64121 5.79614 5.85651 5.89136 5.92838 6.08621 6.14982 6.23938 6.31463 6.51465 6.62362 6.69474 6.72332 6.82511 7.07586 7.61658 7.66358 8.31026 8.36695 9.48031 10.05430 10.39706 11.40724 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.002760 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.451695 B =10140.785302 C =10406.808988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.127 4.127 5 C -0.091 4.091 6 H 0.083 0.917 7 C -0.131 4.131 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.708 5.708 11 C 0.116 3.884 12 H 0.093 0.907 13 C -0.176 4.176 14 C 0.167 3.833 15 H 0.073 0.927 16 N -0.712 5.712 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.159 4.159 26 C 0.050 3.950 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.400 0.600 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 20.590 -11.984 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.111 4.111 6 H 0.101 0.899 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.358 5.358 11 C 0.010 3.990 12 H 0.111 0.889 13 C -0.218 4.218 14 C 0.055 3.945 15 H 0.091 0.909 16 N -0.350 5.350 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.199 4.199 26 C -0.078 4.078 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.071 20.120 -12.298 24.924 hybrid contribution 0.627 -0.460 0.548 0.951 sum -7.444 19.660 -11.750 24.083 Atomic orbital electron populations 1.22530 0.87779 1.02202 1.00350 1.63591 1.07977 1.14127 1.40492 1.23040 0.95554 0.89747 1.00357 1.22797 0.97893 0.99122 0.96653 1.22115 0.95410 0.96011 0.97569 0.89888 1.21692 0.99305 0.98571 0.97612 1.20635 0.85882 0.80673 0.82986 1.90681 1.18371 1.67344 1.65689 1.45755 1.10666 1.42431 1.36992 1.21801 0.98718 0.90062 0.88413 0.88858 1.24339 1.02388 0.94070 1.01053 1.21663 0.92469 0.86832 0.93547 0.90871 1.42413 1.58218 1.18008 1.16385 1.19336 1.22068 0.98182 0.97980 0.91056 1.24776 1.01096 0.98607 0.96424 1.69666 1.49281 1.27620 1.11390 0.86117 0.80045 0.81572 0.78445 1.20509 1.21830 1.21807 1.23845 0.97125 0.99713 0.99226 1.22881 0.98601 0.96744 0.89536 0.95458 0.91607 0.91304 0.90297 0.93653 0.90707 0.90315 0.88469 0.88718 0.76567 0.89697 0.92448 0.78025 0.93461 0.91798 0.89101 0.90693 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.06 0.55 0.73 16 2 N -0.54 -5.45 5.44 -239.52 -1.30 -6.75 16 3 C 0.04 0.33 6.73 -2.30 -0.02 0.31 16 4 C -0.13 -0.92 6.53 -24.59 -0.16 -1.08 16 5 C -0.09 -0.85 2.52 -88.80 -0.22 -1.07 16 6 H 0.08 0.88 7.97 -51.93 -0.41 0.47 16 7 C -0.13 -1.14 5.11 -27.88 -0.14 -1.28 16 8 C 0.51 6.43 7.64 -10.99 -0.08 6.35 16 9 O -0.54 -8.84 14.60 5.55 0.08 -8.76 16 10 N -0.71 -8.70 5.26 -53.02 -0.28 -8.98 16 11 C 0.12 1.73 4.30 -67.12 -0.29 1.44 16 12 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 13 C -0.18 -3.10 7.70 -25.78 -0.20 -3.30 16 14 C 0.17 3.17 4.37 -66.98 -0.29 2.88 16 15 H 0.07 1.35 8.10 -51.93 -0.42 0.92 16 16 N -0.71 -17.53 5.41 -52.50 -0.28 -17.81 16 17 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.16 -2.49 7.57 -25.92 -0.20 -2.68 16 26 C 0.05 0.55 5.61 -2.84 -0.02 0.53 16 27 H 0.03 0.24 8.10 -51.93 -0.42 -0.18 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.35 7.78 -51.93 -0.40 -0.05 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 34 H 0.10 0.73 8.00 -51.93 -0.42 0.32 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 3.99 8.70 -40.82 -0.36 3.64 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.39 10.09 7.92 -40.82 -0.32 9.77 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 43 H 0.07 0.88 7.73 -51.92 -0.40 0.48 16 44 H 0.07 0.84 7.21 -51.93 -0.37 0.47 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -31.97 353.76 -9.76 -41.73 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.69 Total: 9.80 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.32 Total: -4.49 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -1.14 Total: -60.75 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.97 -9.76 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020925100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.692 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds