Wall clock time and date at job start Tue Mar 31 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47840 * 110.99992 * 2 1 4 4 C 1.54906 * 104.79740 * 146.36180 * 3 2 1 5 5 C 1.55137 * 101.65340 * 322.92990 * 4 3 2 6 6 H 1.09002 * 110.70628 * 277.26996 * 5 4 3 7 7 C 1.53002 * 110.85664 * 154.10308 * 5 4 3 8 8 C 1.50696 * 109.47456 * 177.50859 * 7 5 4 9 9 O 1.21284 * 119.99814 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00238 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99889 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.84715 * 334.66790 * 11 10 8 13 13 C 1.53779 * 113.61158 * 105.86317 * 11 10 8 14 14 C 1.54054 * 86.98248 * 89.16388 * 13 11 10 15 15 H 1.09006 * 113.60736 * 270.88132 * 14 13 11 16 16 N 1.46498 * 113.69385 * 139.99180 * 14 13 11 17 17 C 1.36940 * 120.00222 * 107.46540 * 16 14 13 18 18 H 1.07993 * 119.99884 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99855 * 179.97438 * 17 16 14 20 20 N 1.31611 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47078 * 119.99917 * 21 19 17 24 24 H 1.48496 * 109.46952 * 240.00251 * 21 19 17 25 25 C 1.53775 * 87.07858 * 25.42839 * 14 13 11 26 26 C 1.47441 * 110.99858 * 120.83939 * 2 1 3 27 27 H 1.09001 * 109.47316 * 299.15787 * 1 2 3 28 28 H 1.08996 * 109.47481 * 59.15617 * 1 2 3 29 29 H 1.08998 * 109.47102 * 179.16121 * 1 2 3 30 30 H 1.09005 * 110.37368 * 265.19482 * 3 2 1 31 31 H 1.08999 * 110.37573 * 27.42304 * 3 2 1 32 32 H 1.09002 * 110.99368 * 204.83396 * 4 3 2 33 33 H 1.08999 * 110.98835 * 81.02106 * 4 3 2 34 34 H 1.08999 * 109.46889 * 297.51152 * 7 5 4 35 35 H 1.09003 * 109.47132 * 57.50899 * 7 5 4 36 36 H 0.96994 * 119.99844 * 0.02562 * 10 8 7 37 37 H 1.09000 * 113.60787 * 203.66222 * 13 11 10 38 38 H 1.08996 * 113.61972 * 334.56729 * 13 11 10 39 39 H 0.97002 * 119.99565 * 287.45516 * 16 14 13 40 40 H 0.97003 * 120.00336 * 179.97438 * 20 19 17 41 41 H 1.08997 * 113.61428 * 220.02290 * 25 14 13 42 42 H 1.08995 * 113.61460 * 89.12296 * 25 14 13 43 43 H 1.09008 * 109.88448 * 117.33501 * 26 2 1 44 44 H 1.08999 * 110.02918 * 356.22656 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3743 0.7747 2.7392 7 6 4.1548 -0.4347 2.4718 8 6 3.7496 -1.3720 3.5800 9 8 2.5846 -1.4578 3.9060 10 7 4.6820 -2.1141 4.2096 11 6 4.2879 -3.0258 5.2866 12 1 3.3645 -2.7233 5.7805 13 6 4.3111 -4.5082 4.8782 14 6 5.7838 -4.5255 5.3302 15 1 6.4859 -4.2573 4.5407 16 7 6.1670 -5.7477 6.0412 17 6 6.9724 -6.6714 5.4302 18 1 7.3248 -6.4991 4.4240 19 6 7.3359 -7.8292 6.1041 20 7 6.9061 -8.0395 7.3302 21 14 8.4341 -9.0896 5.2703 22 1 8.7773 -8.6201 3.9039 23 1 9.6790 -9.2618 6.0613 24 1 7.7193 -10.3882 5.1831 25 6 5.4293 -3.3555 6.2630 26 6 1.9973 -0.7056 1.1819 27 1 -0.3634 0.5007 0.8974 28 1 -0.3634 0.5268 -0.8823 29 1 -0.3633 -1.0275 -0.0150 30 1 2.2147 1.7038 -1.0183 31 1 1.2881 2.0595 0.4706 32 1 3.5495 2.2720 1.2640 33 1 4.1301 0.9282 0.2243 34 1 4.6248 -1.0028 1.6690 35 1 4.8607 0.3008 2.8578 36 1 5.6139 -2.0446 3.9496 37 1 3.6608 -5.1383 5.4849 38 1 4.1793 -4.6684 3.8082 39 1 5.8503 -5.9026 6.9449 40 1 7.1598 -8.8487 7.8011 41 1 6.1996 -2.5859 6.3101 42 1 5.0842 -3.6712 7.2475 43 1 2.5697 -1.5785 0.8674 44 1 1.1771 -1.0142 1.8301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020925100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:11 Heat of formation + Delta-G solvation = -29.395699 kcal Electronic energy + Delta-G solvation = -21888.679207 eV Core-core repulsion = 18647.455967 eV Total energy + Delta-G solvation = -3241.223241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29435 -40.06474 -38.97495 -35.75688 -34.37400 -33.92258 -31.85076 -30.77182 -28.32250 -26.61034 -26.46882 -25.80461 -23.83342 -22.17153 -21.96510 -20.89048 -20.34013 -19.15041 -18.09236 -17.42985 -16.86808 -16.72585 -16.24171 -16.09896 -15.74371 -15.46555 -15.02669 -14.96719 -14.36092 -14.17125 -14.01754 -13.69633 -13.46275 -13.44601 -13.31759 -12.85340 -12.72073 -12.62279 -12.52374 -12.26365 -12.10571 -12.09749 -11.84520 -11.74352 -11.71727 -11.57430 -11.19804 -10.85214 -10.78140 -9.97604 -9.31185 -8.99145 -7.95239 -5.23779 1.48035 1.48707 1.58555 1.69894 2.21956 2.56464 3.09222 3.36558 3.56549 3.70194 3.71689 3.85498 3.87777 3.96427 4.02773 4.32438 4.33272 4.36880 4.40622 4.46306 4.54396 4.56707 4.68383 4.74925 4.83075 4.87018 4.90864 4.93180 4.94398 5.01212 5.12716 5.13918 5.16730 5.21767 5.28796 5.39272 5.51431 5.73885 5.98621 6.09798 6.27037 6.64536 7.33020 7.33896 8.09782 8.31921 9.28327 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.002760 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.451695 B =10140.785302 C =10406.808988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.551 5.551 3 C 0.036 3.964 4 C -0.116 4.116 5 C -0.090 4.090 6 H 0.067 0.933 7 C -0.121 4.121 8 C 0.508 3.492 9 O -0.585 6.585 10 N -0.700 5.700 11 C 0.135 3.865 12 H 0.085 0.915 13 C -0.175 4.175 14 C 0.154 3.846 15 H 0.085 0.915 16 N -0.728 5.728 17 C -0.242 4.242 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.972 3.028 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.297 1.297 25 C -0.142 4.142 26 C 0.051 3.949 27 H 0.023 0.977 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 22.679 -13.783 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.275 5.275 3 C -0.091 4.091 4 C -0.154 4.154 5 C -0.110 4.110 6 H 0.085 0.915 7 C -0.161 4.161 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.352 5.352 11 C 0.028 3.972 12 H 0.103 0.897 13 C -0.217 4.217 14 C 0.044 3.956 15 H 0.103 0.897 16 N -0.365 5.365 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.224 1.224 25 C -0.182 4.182 26 C -0.077 4.077 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.693 22.270 -14.154 27.223 hybrid contribution 0.110 -1.045 1.053 1.488 sum -6.583 21.225 -13.101 25.797 Atomic orbital electron populations 1.22540 0.87431 1.02008 1.00881 1.63610 1.08512 1.15486 1.39879 1.23160 0.96065 0.88572 1.01328 1.22787 0.97611 0.99343 0.95633 1.22076 0.95253 0.96063 0.97588 0.91459 1.21724 0.99519 0.98399 0.96463 1.21399 0.85143 0.80549 0.83219 1.90679 1.20238 1.68582 1.66981 1.45665 1.11613 1.41668 1.36221 1.21437 0.98224 0.88765 0.88733 0.89696 1.24197 1.00940 0.96105 1.00432 1.22009 0.92981 0.86019 0.94551 0.89721 1.42622 1.58185 1.19531 1.16191 1.19748 1.21068 0.98422 0.98125 0.90276 1.25586 1.03321 1.00896 0.97228 1.69819 1.51287 1.28086 1.12965 0.85090 0.77913 0.78746 0.78129 1.18765 1.22032 1.22441 1.23648 0.97701 0.98505 0.98302 1.22788 0.98017 0.97196 0.89664 0.95836 0.90057 0.91997 0.89137 0.93459 0.88750 0.89233 0.86649 0.85473 0.74794 0.91617 0.92756 0.79458 0.94068 0.89308 0.89803 0.91739 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.12 127.69 1.16 1.51 16 2 N -0.55 -10.62 5.44 -911.71 -4.96 -15.59 16 3 C 0.04 0.50 6.73 86.77 0.58 1.09 16 4 C -0.12 -1.32 6.53 31.98 0.21 -1.11 16 5 C -0.09 -1.51 2.52 -9.61 -0.02 -1.53 16 6 H 0.07 1.36 7.97 -2.39 -0.02 1.34 16 7 C -0.12 -1.72 5.11 29.85 0.15 -1.57 16 8 C 0.51 11.88 7.64 87.66 0.67 12.55 16 9 O -0.58 -18.89 14.60 -3.04 -0.04 -18.93 16 10 N -0.70 -15.59 5.26 -440.04 -2.32 -17.90 16 11 C 0.14 3.87 4.30 45.51 0.20 4.06 16 12 H 0.08 2.66 7.50 -2.39 -0.02 2.64 16 13 C -0.17 -6.11 7.70 31.21 0.24 -5.87 16 14 C 0.15 5.69 4.37 45.61 0.20 5.89 16 15 H 0.08 2.93 8.10 -2.38 -0.02 2.91 16 16 N -0.73 -35.90 5.41 -320.01 -1.73 -37.63 16 17 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 20 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 21 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 C -0.14 -4.21 7.57 31.12 0.24 -3.97 16 26 C 0.05 1.11 5.61 86.65 0.49 1.60 16 27 H 0.02 0.42 8.10 -2.39 -0.02 0.40 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 0.64 7.78 -2.39 -0.02 0.62 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.87 8.05 -2.39 -0.02 0.85 16 34 H 0.12 1.31 8.00 -2.39 -0.02 1.29 16 35 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 6.86 8.70 -92.71 -0.81 6.05 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.37 19.94 7.92 -92.71 -0.73 19.21 16 40 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 43 H 0.06 1.49 7.73 -2.38 -0.02 1.47 16 44 H 0.04 1.01 7.21 -2.39 -0.02 0.99 16 Total: -1.00 -70.19 353.76 -1.89 -72.07 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.56 Total: 32.94 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.42 Total: -3.66 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -8.73 Total: -130.12 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.04 Total: -18.93 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.19 -1.89 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020925100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.678 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds