Wall clock time and date at job start Tue Mar 31 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47446 * 111.00255 * 2 1 4 4 C 1.54316 * 107.23320 * 123.25926 * 3 2 1 5 5 C 1.55139 * 103.01810 * 22.28197 * 4 3 2 6 6 H 1.09002 * 110.99125 * 82.47994 * 5 4 3 7 7 C 1.52999 * 110.99115 * 206.25441 * 5 4 3 8 8 C 1.50699 * 109.47245 * 185.00565 * 7 5 4 9 9 O 1.21283 * 120.00210 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00005 * 180.02562 * 8 7 5 11 11 C 1.46506 * 120.00017 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.84621 * 23.80586 * 11 10 8 13 13 C 1.53776 * 113.61381 * 154.99930 * 11 10 8 14 14 C 1.53781 * 87.08242 * 139.98073 * 13 11 10 15 15 H 1.08993 * 113.61886 * 220.02004 * 14 13 11 16 16 N 1.46502 * 113.60933 * 89.19715 * 14 13 11 17 17 C 1.36937 * 119.99515 * 155.00163 * 16 14 13 18 18 H 1.07997 * 120.00174 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99853 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00338 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00260 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47110 * 59.99797 * 21 19 17 23 23 H 1.48492 * 109.47564 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47003 * 300.00112 * 21 19 17 25 25 C 1.53778 * 113.61578 * 252.49959 * 11 10 8 26 26 C 1.47843 * 110.99888 * 120.84451 * 2 1 3 27 27 H 1.09006 * 109.46978 * 59.87430 * 1 2 3 28 28 H 1.08996 * 109.47091 * 179.87344 * 1 2 3 29 29 H 1.08998 * 109.46910 * 299.87827 * 1 2 3 30 30 H 1.08997 * 109.88511 * 242.66682 * 3 2 1 31 31 H 1.08994 * 109.88544 * 3.85008 * 3 2 1 32 32 H 1.08999 * 110.70589 * 140.66668 * 4 3 2 33 33 H 1.09003 * 110.70251 * 263.90046 * 4 3 2 34 34 H 1.09003 * 109.47015 * 305.00039 * 7 5 4 35 35 H 1.08998 * 109.47229 * 65.00140 * 7 5 4 36 36 H 0.96993 * 119.99862 * 359.97438 * 10 8 7 37 37 H 1.08999 * 113.61534 * 254.53615 * 13 11 10 38 38 H 1.08999 * 113.61293 * 25.43487 * 13 11 10 39 39 H 0.96998 * 120.00155 * 335.00426 * 16 14 13 40 40 H 0.96992 * 120.00609 * 179.97438 * 20 19 17 41 41 H 1.09007 * 113.61308 * 334.56569 * 25 11 10 42 42 H 1.08994 * 113.61554 * 105.46935 * 25 11 10 43 43 H 1.08998 * 110.37465 * 332.46027 * 26 2 1 44 44 H 1.09003 * 110.37404 * 94.80784 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5437 6 1 4.1306 -0.2832 0.9123 7 6 3.6483 -0.1298 3.0244 8 6 4.1377 -1.5347 3.2648 9 8 4.2047 -2.3196 2.3426 10 7 4.5001 -1.9192 4.5047 11 6 4.9754 -3.2851 4.7385 12 1 5.3798 -3.7521 3.8403 13 6 5.8910 -3.4170 5.9669 14 6 5.1666 -4.7400 6.2668 15 1 4.9674 -4.8982 7.3266 16 7 5.7806 -5.9041 5.6232 17 6 5.6095 -7.1524 6.1596 18 1 5.0217 -7.2787 7.0567 19 6 6.1917 -8.2553 5.5502 20 7 6.9078 -8.1015 4.4566 21 14 5.9578 -9.9583 6.2814 22 1 4.5104 -10.2886 6.3136 23 1 6.6755 -10.9572 5.4494 24 1 6.5019 -9.9829 7.6629 25 6 3.9671 -4.1675 5.4932 26 6 1.9988 -0.7077 1.1850 27 1 -0.3633 0.5158 -0.8889 28 1 -0.3633 -1.0276 -0.0023 29 1 -0.3633 0.5119 0.8911 30 1 2.5697 1.5539 -0.9105 31 1 1.1756 2.0891 0.0688 32 1 3.8001 2.1033 0.9905 33 1 2.3745 1.9546 2.0694 34 1 4.4283 0.5792 3.3022 35 1 2.7592 0.0535 3.6277 36 1 4.4462 -1.2915 5.2422 37 1 6.9440 -3.5430 5.7151 38 1 5.7241 -2.6474 6.7204 39 1 6.3083 -5.7906 4.8173 40 1 7.3149 -8.8721 4.0309 41 1 3.2743 -3.6030 6.1173 42 1 3.4670 -4.8994 4.8590 43 1 1.2889 -0.6502 2.0102 44 1 2.2147 -1.7478 0.9408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020925101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:14 Heat of formation + Delta-G solvation = -5.007239 kcal Electronic energy + Delta-G solvation = -21940.958293 eV Core-core repulsion = 18700.792616 eV Total energy + Delta-G solvation = -3240.165678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11370 -39.03700 -37.81138 -33.99800 -33.48773 -32.57249 -30.21161 -29.61484 -27.58302 -25.39726 -25.09745 -24.12610 -22.69935 -21.14754 -20.85870 -20.05973 -18.70608 -17.36315 -17.03304 -16.32013 -15.93833 -15.42951 -15.20114 -14.83779 -14.20732 -14.06288 -13.95087 -13.62633 -13.37426 -13.03218 -12.72506 -12.59588 -12.47584 -12.03081 -11.92167 -11.73216 -11.69146 -11.45632 -11.38076 -10.98649 -10.85426 -10.79963 -10.78278 -10.25928 -10.16345 -9.88364 -9.70317 -9.47970 -8.90100 -8.65977 -8.51175 -6.99787 -5.78023 -3.08301 2.79184 3.34139 3.44248 3.48441 3.49909 3.82619 4.33531 4.43884 4.57024 4.62236 4.84845 4.97067 5.07576 5.11250 5.16060 5.20444 5.26264 5.32917 5.38124 5.40850 5.44129 5.49006 5.53082 5.62676 5.64357 5.74276 5.88695 6.01009 6.08495 6.09590 6.17162 6.24849 6.39349 6.63978 6.74328 6.75790 6.80618 6.85935 7.05404 7.68708 7.71904 8.40098 8.42569 9.50701 10.07126 10.41113 11.44094 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.002903 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.530598 B = 9642.925757 C =10140.480967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.041 3.959 4 C -0.139 4.139 5 C -0.080 4.080 6 H 0.095 0.905 7 C -0.132 4.132 8 C 0.506 3.494 9 O -0.533 6.533 10 N -0.720 5.720 11 C 0.125 3.875 12 H 0.113 0.887 13 C -0.165 4.165 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.705 5.705 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.184 4.184 26 C 0.049 3.951 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 22.799 -2.717 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.087 4.087 4 C -0.178 4.178 5 C -0.100 4.100 6 H 0.114 0.886 7 C -0.173 4.173 8 C 0.292 3.708 9 O -0.409 6.409 10 N -0.370 5.370 11 C 0.021 3.979 12 H 0.131 0.869 13 C -0.205 4.205 14 C 0.058 3.942 15 H 0.085 0.915 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.227 4.227 26 C -0.078 4.078 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.351 21.762 -3.776 23.985 hybrid contribution -0.359 -0.105 1.204 1.261 sum -9.710 21.657 -2.571 23.873 Atomic orbital electron populations 1.22533 0.87826 1.02200 1.00245 1.63570 1.07783 1.13880 1.40800 1.22830 0.97770 0.89598 0.98491 1.22867 1.00005 0.96849 0.98066 1.22051 0.98943 0.94241 0.94756 0.88648 1.21674 1.02728 0.95007 0.97845 1.20636 0.77540 0.89679 0.82989 1.90739 1.53161 1.54565 1.42466 1.46162 1.66743 1.14580 1.09559 1.22619 0.96247 0.80674 0.98334 0.86916 1.23894 0.99926 0.99881 0.96765 1.20904 0.91273 0.86226 0.95755 0.91468 1.42190 1.59739 1.01596 1.30857 1.19220 1.26939 0.84111 1.07474 0.91001 1.24787 1.00187 0.98099 0.97669 1.69655 1.37804 1.29863 1.20446 0.86236 0.77560 0.84074 0.78101 1.21185 1.21648 1.21199 1.24309 0.98876 0.99171 1.00305 1.23161 0.94301 0.99904 0.90465 0.91520 0.91280 0.95719 0.90478 0.92869 0.90517 0.91458 0.88773 0.89212 0.77181 0.90921 0.90409 0.77959 0.93290 0.91388 0.91104 0.94000 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.06 0.55 0.73 16 2 N -0.54 -5.83 5.44 -239.52 -1.30 -7.14 16 3 C 0.04 0.35 6.90 -2.84 -0.02 0.33 16 4 C -0.14 -1.08 6.41 -24.91 -0.16 -1.24 16 5 C -0.08 -0.82 2.57 -88.48 -0.23 -1.05 16 6 H 0.10 1.18 7.87 -51.93 -0.41 0.77 16 7 C -0.13 -1.20 5.21 -27.88 -0.15 -1.35 16 8 C 0.51 6.89 7.68 -10.98 -0.08 6.81 16 9 O -0.53 -9.80 14.54 5.56 0.08 -9.71 16 10 N -0.72 -9.14 5.36 -53.02 -0.28 -9.42 16 11 C 0.13 2.06 4.12 -67.12 -0.28 1.78 16 12 H 0.11 2.27 7.46 -51.93 -0.39 1.88 16 13 C -0.16 -2.59 7.58 -25.92 -0.20 -2.79 16 14 C 0.17 3.36 4.56 -67.12 -0.31 3.05 16 15 H 0.07 1.29 8.10 -51.93 -0.42 0.86 16 16 N -0.71 -17.78 5.31 -52.64 -0.28 -18.06 16 17 C -0.25 -6.86 9.97 -15.06 -0.15 -7.01 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 26 C 0.05 0.57 5.70 -2.30 -0.01 0.56 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.02 0.20 8.10 -51.93 -0.42 -0.22 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.39 7.58 -51.93 -0.39 0.00 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.66 7.96 -51.93 -0.41 0.25 16 36 H 0.39 3.62 8.73 -40.82 -0.36 3.27 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.39 10.43 7.90 -40.82 -0.32 10.11 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.04 0.46 7.55 -51.93 -0.39 0.06 16 44 H 0.09 1.35 7.49 -51.93 -0.39 0.96 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -32.79 353.76 -9.75 -42.54 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.67 Total: 10.72 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.33 Total: -4.02 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -1.14 Total: -62.31 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.79 -9.75 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020925101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.537 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds