Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.01014 * 2 1 4 4 C 1.54313 * 109.88778 * 121.12084 * 2 1 3 5 5 C 1.55431 * 103.04641 * 141.68760 * 4 2 1 6 6 C 1.54904 * 101.51816 * 324.36235 * 5 4 2 7 7 N 1.47449 * 109.88473 * 238.88695 * 2 1 3 8 8 C 1.46899 * 111.00042 * 3.85162 * 7 2 1 9 9 C 1.50697 * 109.46879 * 173.33179 * 8 7 2 10 10 O 1.21286 * 120.00179 * 354.31149 * 9 8 7 11 11 N 1.34778 * 119.99969 * 174.31489 * 9 8 7 12 12 C 1.46502 * 119.99818 * 179.97438 * 11 9 8 13 13 H 1.08996 * 112.84914 * 23.80789 * 12 11 9 14 14 C 1.53792 * 113.61175 * 154.99834 * 12 11 9 15 15 C 1.53780 * 87.07926 * 139.98117 * 14 12 11 16 16 H 1.09002 * 113.61526 * 89.11373 * 15 14 12 17 17 N 1.46496 * 113.61294 * 220.02014 * 15 14 12 18 18 C 1.36943 * 119.99637 * 205.00267 * 17 15 14 19 19 H 1.07992 * 120.00410 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99673 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47237 * 59.99527 * 22 20 18 24 24 H 1.48502 * 109.47267 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47137 * 299.99497 * 22 20 18 26 26 C 1.53777 * 113.61459 * 252.49605 * 12 11 9 27 27 H 1.08999 * 109.47333 * 176.21166 * 1 2 3 28 28 H 1.09001 * 109.47116 * 296.21577 * 1 2 3 29 29 H 1.09002 * 109.46914 * 56.20932 * 1 2 3 30 30 H 1.09005 * 110.70000 * 260.06908 * 4 2 1 31 31 H 1.08998 * 110.70744 * 23.29989 * 4 2 1 32 32 H 1.08999 * 111.10469 * 206.29363 * 5 4 2 33 33 H 1.08995 * 110.99946 * 82.39200 * 5 4 2 34 34 H 1.08994 * 110.37390 * 278.17813 * 6 5 4 35 35 H 1.09003 * 110.36805 * 155.95318 * 6 5 4 36 36 H 1.08994 * 109.47149 * 293.33017 * 8 7 2 37 37 H 1.09006 * 109.46994 * 53.33541 * 8 7 2 38 38 H 0.96997 * 120.00275 * 0.02562 * 11 9 8 39 39 H 1.08995 * 113.61023 * 254.53157 * 14 12 11 40 40 H 1.08999 * 113.61164 * 25.35245 * 14 12 11 41 41 H 0.96998 * 120.00665 * 25.00020 * 17 15 14 42 42 H 0.97002 * 119.99783 * 179.97438 * 21 20 18 43 43 H 1.09002 * 113.61279 * 334.56679 * 26 12 11 44 44 H 1.08993 * 113.61482 * 105.47634 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7500 1.2423 5 6 3.2916 -1.5153 0.6935 6 6 2.8188 -1.8833 -0.7349 7 7 2.0316 -0.7165 -1.1871 8 6 0.9239 -1.1339 -2.0570 9 6 1.4782 -1.7143 -3.3325 10 8 2.6717 -1.6807 -3.5456 11 7 0.6477 -2.2708 -4.2364 12 6 1.1865 -2.8345 -5.4766 13 1 2.2340 -3.1232 -5.3902 14 6 0.2960 -3.9251 -6.0954 15 6 0.6311 -3.3111 -7.4649 16 1 1.5272 -3.7294 -7.9235 17 7 -0.5102 -3.2643 -8.3821 18 6 -0.3007 -3.2433 -9.7353 19 1 0.7058 -3.2608 -10.1262 20 6 -1.3822 -3.1984 -10.6044 21 7 -2.6090 -3.1765 -10.1279 22 14 -1.0965 -3.1704 -12.4502 23 1 -0.3608 -4.3949 -12.8558 24 1 -2.4040 -3.1235 -13.1528 25 1 -0.2977 -1.9711 -12.8094 26 6 0.8797 -1.9873 -6.7227 27 1 -0.3634 -1.0254 -0.0679 28 1 -0.3633 0.4540 0.9220 29 1 -0.3633 0.5716 -0.8541 30 1 2.3514 -0.0465 2.0203 31 1 1.3055 -1.4472 1.6168 32 1 3.4915 -2.4110 1.2816 33 1 4.1681 -0.8683 0.6602 34 1 2.1938 -2.7759 -0.7096 35 1 3.6760 -2.0396 -1.3898 36 1 0.3243 -1.8869 -1.5457 37 1 0.3008 -0.2707 -2.2913 38 1 -0.3069 -2.2974 -4.0662 39 1 0.6856 -4.9343 -5.9623 40 1 -0.7554 -3.8376 -5.8217 41 1 -1.4143 -3.2482 -8.0311 42 1 -3.3646 -3.1448 -10.7352 43 1 -0.0125 -1.3693 -6.6216 44 1 1.7403 -1.4324 -7.0961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022711003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = 5.026582 kcal Electronic energy + Delta-G solvation = -22013.065227 eV Core-core repulsion = 18773.334648 eV Total energy + Delta-G solvation = -3239.730579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33422 -39.12292 -37.64745 -34.03545 -32.90681 -32.33298 -31.50916 -29.88292 -26.96460 -25.79421 -25.10392 -24.33446 -22.31835 -21.53103 -20.52673 -19.81732 -19.06454 -17.40057 -17.10746 -16.31585 -15.95152 -15.59987 -15.43327 -14.54444 -14.43416 -14.29049 -13.89495 -13.71809 -13.04219 -12.96335 -12.84653 -12.64497 -12.62534 -12.09478 -11.90372 -11.76718 -11.55143 -11.28119 -11.24792 -11.09964 -10.94927 -10.88350 -10.59465 -10.49927 -10.30116 -10.06277 -9.68831 -9.49238 -8.90091 -8.70185 -8.45271 -6.98536 -5.80322 -3.09075 2.76644 3.15513 3.43385 3.47751 3.48759 3.83670 4.33051 4.39101 4.54211 4.58554 4.82633 4.89862 4.96969 5.03221 5.10171 5.13360 5.19744 5.24408 5.26720 5.35434 5.39637 5.48553 5.49944 5.65665 5.69828 5.78357 5.87688 5.94983 5.97378 6.02106 6.13919 6.26004 6.32385 6.54094 6.63556 6.73415 6.77479 6.78717 7.09268 7.68466 7.70945 8.38270 8.41060 9.49587 10.06370 10.40954 11.42086 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045357 B = 0.002673 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.176111 B =10471.828893 C =10747.359037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.131 4.131 6 C 0.046 3.954 7 N -0.506 5.506 8 C 0.028 3.972 9 C 0.509 3.491 10 O -0.528 6.528 11 N -0.718 5.718 12 C 0.120 3.880 13 H 0.108 0.892 14 C -0.159 4.159 15 C 0.169 3.831 16 H 0.079 0.921 17 N -0.710 5.710 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.176 4.176 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.398 0.602 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 3.501 24.002 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.041 4.041 3 H 0.106 0.894 4 C -0.177 4.177 5 C -0.169 4.169 6 C -0.082 4.082 7 N -0.230 5.230 8 C -0.104 4.104 9 C 0.294 3.706 10 O -0.403 6.403 11 N -0.369 5.369 12 C 0.015 3.985 13 H 0.126 0.874 14 C -0.199 4.199 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.218 4.218 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.218 3.840 23.326 24.717 hybrid contribution -1.368 -0.428 -0.368 1.480 sum 5.849 3.412 22.958 23.936 Atomic orbital electron populations 1.22418 0.95812 1.02221 1.02670 1.22502 0.93836 0.99084 0.88671 0.89360 1.22931 0.97788 0.99409 0.97595 1.22770 0.98104 1.00312 0.95725 1.23097 0.98493 0.91139 0.95437 1.63465 1.20272 1.23606 1.15694 1.22316 0.94248 1.00938 0.92874 1.20542 0.87135 0.78041 0.84892 1.90676 1.15416 1.56338 1.77887 1.46049 1.10357 1.60249 1.20214 1.22451 0.98719 0.95615 0.81726 0.87424 1.23862 0.99667 0.97680 0.98665 1.21353 0.92466 0.92761 0.87832 0.90261 1.42348 1.03181 1.86940 1.02353 1.19278 0.92745 1.42905 0.82604 0.91035 1.24766 0.95212 1.02770 0.98147 1.69649 0.97217 1.57460 1.33877 0.86247 0.76626 0.77925 0.85278 1.21193 1.21691 1.21186 1.24323 1.01377 1.00305 0.95815 0.92246 0.91881 0.91619 0.90758 0.91405 0.90887 0.90546 0.94142 0.89001 0.91940 0.87485 0.76856 0.91612 0.90038 0.78110 0.93410 0.90262 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 7.84 37.16 0.29 -0.85 16 2 C 0.07 0.55 4.02 -66.72 -0.27 0.28 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.14 -0.97 6.48 -24.75 -0.16 -1.13 16 5 C -0.13 -1.04 7.10 -24.44 -0.17 -1.22 16 6 C 0.05 0.48 5.66 -2.30 -0.01 0.47 16 7 N -0.51 -5.52 4.89 -224.79 -1.10 -6.62 16 8 C 0.03 0.28 4.16 -4.98 -0.02 0.26 16 9 C 0.51 6.97 7.52 -10.99 -0.08 6.88 16 10 O -0.53 -9.27 14.63 5.55 0.08 -9.19 16 11 N -0.72 -9.21 5.35 -53.01 -0.28 -9.49 16 12 C 0.12 1.81 4.24 -67.11 -0.28 1.53 16 13 H 0.11 1.73 7.46 -51.93 -0.39 1.34 16 14 C -0.16 -2.50 7.58 -25.91 -0.20 -2.70 16 15 C 0.17 3.30 4.48 -67.12 -0.30 3.00 16 16 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 17 N -0.71 -17.57 5.40 -52.64 -0.28 -17.85 16 18 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.18 -3.13 7.68 -25.92 -0.20 -3.32 16 27 H 0.06 0.39 6.60 -51.93 -0.34 0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.44 6.71 -51.93 -0.35 0.09 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.42 7.68 -51.93 -0.40 0.02 16 35 H 0.09 1.18 7.34 -51.93 -0.38 0.80 16 36 H 0.06 0.53 6.61 -51.93 -0.34 0.18 16 37 H 0.11 0.96 6.39 -51.93 -0.33 0.63 16 38 H 0.40 4.13 8.73 -40.82 -0.36 3.77 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.38 10.00 7.92 -40.82 -0.32 9.67 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -32.18 347.22 -9.70 -41.87 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.39 Total: 10.13 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.65 Total: -4.16 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.94 Total: -61.18 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.18 -9.70 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022711003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.899 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds