Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.01014 * 2 1 4 4 C 1.54313 * 109.88778 * 121.12084 * 2 1 3 5 5 C 1.55431 * 103.04641 * 141.68760 * 4 2 1 6 6 C 1.54904 * 101.51816 * 324.36235 * 5 4 2 7 7 N 1.47449 * 109.88473 * 238.88695 * 2 1 3 8 8 C 1.46899 * 111.00042 * 3.85162 * 7 2 1 9 9 C 1.50697 * 109.46879 * 173.33179 * 8 7 2 10 10 O 1.21286 * 120.00179 * 354.31149 * 9 8 7 11 11 N 1.34778 * 119.99969 * 174.31489 * 9 8 7 12 12 C 1.46502 * 119.99818 * 179.97438 * 11 9 8 13 13 H 1.08996 * 112.84914 * 23.80789 * 12 11 9 14 14 C 1.53792 * 113.61175 * 154.99834 * 12 11 9 15 15 C 1.53780 * 87.07926 * 139.98117 * 14 12 11 16 16 H 1.09002 * 113.61526 * 89.11373 * 15 14 12 17 17 N 1.46496 * 113.61294 * 220.02014 * 15 14 12 18 18 C 1.36943 * 119.99637 * 205.00267 * 17 15 14 19 19 H 1.07992 * 120.00410 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99673 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47237 * 59.99527 * 22 20 18 24 24 H 1.48502 * 109.47267 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47137 * 299.99497 * 22 20 18 26 26 C 1.53777 * 113.61459 * 252.49605 * 12 11 9 27 27 H 1.08999 * 109.47333 * 176.21166 * 1 2 3 28 28 H 1.09001 * 109.47116 * 296.21577 * 1 2 3 29 29 H 1.09002 * 109.46914 * 56.20932 * 1 2 3 30 30 H 1.09005 * 110.70000 * 260.06908 * 4 2 1 31 31 H 1.08998 * 110.70744 * 23.29989 * 4 2 1 32 32 H 1.08999 * 111.10469 * 206.29363 * 5 4 2 33 33 H 1.08995 * 110.99946 * 82.39200 * 5 4 2 34 34 H 1.08994 * 110.37390 * 278.17813 * 6 5 4 35 35 H 1.09003 * 110.36805 * 155.95318 * 6 5 4 36 36 H 1.08994 * 109.47149 * 293.33017 * 8 7 2 37 37 H 1.09006 * 109.46994 * 53.33541 * 8 7 2 38 38 H 0.96997 * 120.00275 * 0.02562 * 11 9 8 39 39 H 1.08995 * 113.61023 * 254.53157 * 14 12 11 40 40 H 1.08999 * 113.61164 * 25.35245 * 14 12 11 41 41 H 0.96998 * 120.00665 * 25.00020 * 17 15 14 42 42 H 0.97002 * 119.99783 * 179.97438 * 21 20 18 43 43 H 1.09002 * 113.61279 * 334.56679 * 26 12 11 44 44 H 1.08993 * 113.61482 * 105.47634 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7500 1.2423 5 6 3.2916 -1.5153 0.6935 6 6 2.8188 -1.8833 -0.7349 7 7 2.0316 -0.7165 -1.1871 8 6 0.9239 -1.1339 -2.0570 9 6 1.4782 -1.7143 -3.3325 10 8 2.6717 -1.6807 -3.5456 11 7 0.6477 -2.2708 -4.2364 12 6 1.1865 -2.8345 -5.4766 13 1 2.2340 -3.1232 -5.3902 14 6 0.2960 -3.9251 -6.0954 15 6 0.6311 -3.3111 -7.4649 16 1 1.5272 -3.7294 -7.9235 17 7 -0.5102 -3.2643 -8.3821 18 6 -0.3007 -3.2433 -9.7353 19 1 0.7058 -3.2608 -10.1262 20 6 -1.3822 -3.1984 -10.6044 21 7 -2.6090 -3.1765 -10.1279 22 14 -1.0965 -3.1704 -12.4502 23 1 -0.3608 -4.3949 -12.8558 24 1 -2.4040 -3.1235 -13.1528 25 1 -0.2977 -1.9711 -12.8094 26 6 0.8797 -1.9873 -6.7227 27 1 -0.3634 -1.0254 -0.0679 28 1 -0.3633 0.4540 0.9220 29 1 -0.3633 0.5716 -0.8541 30 1 2.3514 -0.0465 2.0203 31 1 1.3055 -1.4472 1.6168 32 1 3.4915 -2.4110 1.2816 33 1 4.1681 -0.8683 0.6602 34 1 2.1938 -2.7759 -0.7096 35 1 3.6760 -2.0396 -1.3898 36 1 0.3243 -1.8869 -1.5457 37 1 0.3008 -0.2707 -2.2913 38 1 -0.3069 -2.2974 -4.0662 39 1 0.6856 -4.9343 -5.9623 40 1 -0.7554 -3.8376 -5.8217 41 1 -1.4143 -3.2482 -8.0311 42 1 -3.3646 -3.1448 -10.7352 43 1 -0.0125 -1.3693 -6.6216 44 1 1.7403 -1.4324 -7.0961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022711003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = -18.308157 kcal Electronic energy + Delta-G solvation = -22014.077097 eV Core-core repulsion = 18773.334648 eV Total energy + Delta-G solvation = -3240.742449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31882 -40.18898 -38.89846 -35.75129 -34.27695 -33.24220 -32.16679 -31.75482 -27.91128 -26.53670 -26.39607 -26.15675 -23.76653 -22.27985 -21.58136 -20.95306 -20.20440 -19.14172 -18.28317 -17.54765 -16.78266 -16.64947 -16.43093 -16.12254 -15.98288 -15.16908 -15.00258 -14.93564 -14.56089 -14.27153 -13.84304 -13.42175 -13.35876 -13.29676 -13.18465 -13.15183 -12.79504 -12.39518 -12.31404 -12.26476 -12.17163 -12.03928 -11.91737 -11.73754 -11.64625 -11.56145 -11.49967 -10.87244 -10.67989 -9.94169 -9.21319 -8.98725 -7.95515 -5.23522 1.47935 1.50317 1.56339 1.68802 2.14830 2.57019 3.06142 3.36001 3.66894 3.71074 3.72731 3.85260 3.91731 3.97752 4.03661 4.23815 4.26646 4.29314 4.32215 4.37815 4.52504 4.56371 4.64607 4.74714 4.78542 4.88685 4.90545 4.96808 5.07147 5.11425 5.15108 5.16302 5.21599 5.22797 5.40441 5.43259 5.51329 5.69813 5.97829 6.09095 6.27013 6.67554 7.33582 7.35217 8.09107 8.32909 9.27394 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045357 B = 0.002673 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.176111 B =10471.828893 C =10747.359037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.064 3.936 3 H 0.083 0.917 4 C -0.131 4.131 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.532 5.532 8 C 0.035 3.965 9 C 0.506 3.494 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.138 3.862 13 H 0.102 0.898 14 C -0.138 4.138 15 C 0.150 3.850 16 H 0.077 0.923 17 N -0.723 5.723 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.280 1.280 26 C -0.170 4.170 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.413 0.587 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.071 0.929 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 3.509 25.697 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.043 4.043 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.082 4.082 7 N -0.257 5.257 8 C -0.096 4.096 9 C 0.293 3.707 10 O -0.449 6.449 11 N -0.360 5.360 12 C 0.032 3.968 13 H 0.120 0.880 14 C -0.178 4.178 15 C 0.039 3.961 16 H 0.095 0.905 17 N -0.361 5.361 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.206 1.206 26 C -0.212 4.212 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.249 0.751 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.987 3.851 25.065 26.304 hybrid contribution -1.202 -0.400 -0.846 1.523 sum 5.785 3.451 24.219 25.138 Atomic orbital electron populations 1.22382 0.94315 1.02630 1.03401 1.22560 0.95085 0.98546 0.88158 0.89925 1.22914 0.97261 0.99537 0.97261 1.22754 0.98440 1.00987 0.94374 1.22996 0.97541 0.91383 0.96266 1.63365 1.21108 1.23996 1.17190 1.22324 0.94204 1.01973 0.91075 1.21238 0.86559 0.77160 0.85767 1.90666 1.17381 1.57972 1.78871 1.45911 1.11205 1.59720 1.19168 1.22058 0.98425 0.94365 0.81902 0.88020 1.23655 1.00272 0.98451 0.95412 1.21665 0.91087 0.94587 0.88759 0.90514 1.42483 1.04059 1.87397 1.02144 1.19659 0.92826 1.41190 0.84197 0.90736 1.25539 0.95121 1.03677 1.02301 1.69792 0.97798 1.59356 1.34914 0.85245 0.76238 0.78143 0.80342 1.20347 1.22098 1.20648 1.24162 1.00650 0.99360 0.97066 0.91789 0.90535 0.91696 0.89408 0.90395 0.89521 0.91130 0.93948 0.92235 0.89449 0.85928 0.75082 0.90069 0.89279 0.79152 0.93962 0.91007 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 7.84 71.98 0.56 -1.18 16 2 C 0.06 0.92 4.02 45.26 0.18 1.10 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.13 -1.50 6.48 31.88 0.21 -1.29 16 5 C -0.13 -1.86 7.10 32.08 0.23 -1.63 16 6 C 0.05 0.94 5.66 86.77 0.49 1.43 16 7 N -0.53 -10.95 4.89 -865.09 -4.23 -15.18 16 8 C 0.04 0.65 4.16 85.56 0.36 1.00 16 9 C 0.51 13.27 7.52 87.66 0.66 13.93 16 10 O -0.57 -20.08 14.63 -3.05 -0.04 -20.12 16 11 N -0.71 -16.98 5.35 -440.02 -2.36 -19.34 16 12 C 0.14 4.04 4.24 45.52 0.19 4.23 16 13 H 0.10 3.19 7.46 -2.39 -0.02 3.17 16 14 C -0.14 -4.14 7.58 31.12 0.24 -3.90 16 15 C 0.15 5.80 4.48 45.52 0.20 6.00 16 16 H 0.08 2.99 8.10 -2.39 -0.02 2.98 16 17 N -0.72 -35.88 5.40 -320.44 -1.73 -37.61 16 18 C -0.25 -13.68 9.97 84.03 0.84 -12.84 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 21 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 22 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 C -0.17 -6.00 7.68 31.12 0.24 -5.76 16 27 H 0.06 0.61 6.60 -2.39 -0.02 0.59 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.68 6.71 -2.39 -0.02 0.67 16 30 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.76 7.85 -2.39 -0.02 0.74 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 0.82 7.68 -2.39 -0.02 0.80 16 35 H 0.06 1.59 7.34 -2.39 -0.02 1.57 16 36 H 0.09 1.20 6.61 -2.39 -0.02 1.18 16 37 H 0.12 1.89 6.39 -2.38 -0.02 1.87 16 38 H 0.41 7.56 8.73 -92.71 -0.81 6.75 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 41 H 0.38 19.70 7.92 -92.71 -0.73 18.97 16 42 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -69.77 347.22 -1.73 -71.50 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.55 Total: 33.62 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.86 Total: -2.67 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -8.03 Total: -130.42 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.04 Total: -20.12 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.77 -1.73 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022711003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.195 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds