Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.49001 * 110.97238 * 2 1 4 4 C 1.54938 * 103.00838 * 200.29893 * 3 2 1 5 5 C 1.54598 * 103.08078 * 37.39751 * 4 3 2 6 6 C 1.47908 * 110.99898 * 242.55819 * 2 1 3 7 7 H 1.09000 * 110.07952 * 26.39862 * 6 2 1 8 8 C 1.50698 * 109.91604 * 265.20075 * 6 2 1 9 9 O 1.21286 * 119.99879 * 342.40343 * 8 6 2 10 10 N 1.34770 * 119.99947 * 162.41346 * 8 6 2 11 11 C 1.46506 * 120.00230 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47201 * 185.10579 * 11 10 8 13 13 H 1.08990 * 109.87862 * 305.51504 * 12 11 10 14 14 C 1.54333 * 109.87762 * 66.69257 * 12 11 10 15 15 C 1.55155 * 102.93946 * 141.60922 * 14 12 11 16 16 C 1.54905 * 101.58093 * 324.49289 * 15 14 12 17 17 N 1.47022 * 109.88337 * 184.49405 * 12 11 10 18 18 C 1.36934 * 125.64596 * 61.67702 * 17 12 11 19 19 H 1.07999 * 119.99878 * 14.82863 * 18 17 12 20 20 C 1.38809 * 120.00641 * 194.82068 * 18 17 12 21 21 N 1.31623 * 119.99567 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00507 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47129 * 60.00399 * 22 20 18 24 24 H 1.48502 * 109.46986 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47383 * 300.00346 * 22 20 18 26 26 H 1.08997 * 109.46899 * 177.44287 * 1 2 3 27 27 H 1.09001 * 109.46881 * 297.44318 * 1 2 3 28 28 H 1.08999 * 109.46954 * 57.43731 * 1 2 3 29 29 H 1.09005 * 110.86225 * 81.89913 * 3 2 1 30 30 H 1.09000 * 110.68514 * 318.61693 * 3 2 1 31 31 H 1.08997 * 110.72579 * 278.95456 * 4 3 2 32 32 H 1.08994 * 110.72644 * 155.84259 * 4 3 2 33 33 H 1.09001 * 110.31037 * 96.86466 * 5 4 3 34 34 H 1.09000 * 110.31040 * 218.94496 * 5 4 3 35 35 H 0.96997 * 120.00328 * 359.97438 * 10 8 6 36 36 H 1.08993 * 109.46971 * 305.10968 * 11 10 8 37 37 H 1.09008 * 109.46739 * 65.11259 * 11 10 8 38 38 H 1.09000 * 110.71502 * 259.96623 * 14 12 11 39 39 H 1.08995 * 110.72115 * 23.24169 * 14 12 11 40 40 H 1.09001 * 110.99997 * 206.42343 * 15 14 12 41 41 H 1.08999 * 111.03645 * 82.58749 * 15 14 12 42 42 H 1.08997 * 110.36774 * 278.17079 * 16 15 14 43 43 H 1.09011 * 110.45759 * 155.89913 * 16 15 14 44 44 H 0.96998 * 120.00495 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3913 0.0000 4 6 3.4492 1.2102 -0.5237 5 6 3.2983 0.1041 -1.5932 6 6 1.9991 -0.6364 -1.2255 7 1 1.2771 -0.5449 -2.0369 8 6 2.2937 -2.0907 -0.9624 9 8 2.3970 -2.4919 0.1774 10 7 2.4426 -2.9453 -1.9938 11 6 2.7296 -4.3590 -1.7382 12 6 2.9762 -5.0777 -3.0662 13 1 2.1324 -4.9165 -3.7370 14 6 4.2742 -4.5516 -3.7144 15 6 4.9016 -5.8326 -4.3250 16 6 4.5109 -6.9014 -3.2740 17 7 3.1590 -6.5171 -2.8295 18 6 2.2274 -7.3611 -2.2864 19 1 1.1954 -7.0511 -2.2131 20 6 2.6092 -8.6153 -1.8303 21 7 3.8669 -8.9931 -1.9193 22 14 1.3382 -9.7669 -1.0902 23 1 0.2865 -10.0566 -2.0978 24 1 1.9963 -11.0342 -0.6826 25 1 0.7215 -9.1253 0.0985 26 1 -0.3633 -1.0266 -0.0458 27 1 -0.3633 0.4736 0.9120 28 1 -0.3633 0.5531 -0.8661 29 1 2.0073 1.8052 1.0084 30 1 1.4257 2.0247 -0.6741 31 1 4.1116 0.8837 0.2780 32 1 3.8153 2.1334 -0.9727 33 1 3.2136 0.5465 -2.5857 34 1 4.1479 -0.5778 -1.5547 35 1 2.3598 -2.6244 -2.9054 36 1 3.6165 -4.4419 -1.1100 37 1 1.8803 -4.8160 -1.2301 38 1 4.0485 -3.8237 -4.4937 39 1 4.9339 -4.1202 -2.9616 40 1 5.9848 -5.7383 -4.4023 41 1 4.4610 -6.0596 -5.2957 42 1 5.2065 -6.8806 -2.4351 43 1 4.4938 -7.8928 -3.7271 44 1 4.1339 -9.8694 -1.6003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027792752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = -5.501697 kcal Electronic energy + Delta-G solvation = -22811.789680 eV Core-core repulsion = 19571.602561 eV Total energy + Delta-G solvation = -3240.187119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05874 -38.18479 -37.25574 -34.11396 -32.49355 -32.32561 -30.22647 -29.39532 -28.23093 -25.83826 -24.87599 -23.92287 -21.90149 -21.36128 -20.29033 -19.89696 -19.30315 -17.35883 -16.57790 -16.21915 -15.79727 -15.18078 -14.65214 -14.55129 -14.16322 -14.02806 -13.86071 -13.76789 -13.27177 -12.90691 -12.63151 -12.11608 -12.04976 -11.87157 -11.77170 -11.68194 -11.48957 -11.31645 -11.19225 -10.98337 -10.92376 -10.75908 -10.21788 -10.11247 -9.92357 -9.82431 -9.70848 -9.43010 -8.60852 -8.52481 -8.50892 -6.82159 -5.75408 -3.12029 2.97158 3.29284 3.42352 3.46817 3.47877 4.01167 4.42628 4.45679 4.52017 4.69595 4.97887 5.06634 5.20002 5.21747 5.31723 5.35382 5.42425 5.44822 5.54137 5.55848 5.63366 5.64487 5.75925 5.82485 5.84956 5.95911 6.09150 6.15571 6.25990 6.47297 6.55608 6.62287 6.65353 6.76949 6.79882 6.87092 7.10778 7.52288 7.62245 7.79961 7.91993 8.27335 8.66051 9.18856 9.79490 10.47023 11.36678 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.004112 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.478778 B = 6807.242838 C = 7722.457203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.498 5.498 3 C 0.036 3.964 4 C -0.123 4.123 5 C -0.119 4.119 6 C 0.048 3.952 7 H 0.071 0.929 8 C 0.512 3.488 9 O -0.518 6.518 10 N -0.727 5.727 11 C 0.111 3.889 12 C 0.152 3.848 13 H 0.036 0.964 14 C -0.125 4.125 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.589 5.589 18 C -0.235 4.235 19 H 0.075 0.925 20 C 0.000 4.000 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.392 0.608 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 20.369 -3.424 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.222 5.222 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.065 4.065 7 H 0.089 0.911 8 C 0.296 3.704 9 O -0.392 6.392 10 N -0.380 5.380 11 C -0.014 4.014 12 C 0.044 3.956 13 H 0.054 0.946 14 C -0.163 4.163 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.313 5.313 18 C -0.363 4.363 19 H 0.092 0.908 20 C -0.198 4.198 21 N -0.562 5.562 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.437 19.492 -2.010 19.648 hybrid contribution -1.065 -0.098 -0.665 1.260 sum -2.503 19.394 -2.675 19.737 Atomic orbital electron populations 1.22534 0.87343 1.02440 1.00771 1.64459 1.08194 1.14130 1.35433 1.23351 0.95027 0.89416 1.01385 1.22478 0.96829 0.98162 0.98590 1.22340 0.96442 0.97739 0.99264 1.22384 0.97925 0.93494 0.92670 0.91082 1.20295 0.77633 0.86974 0.85497 1.90705 1.48706 1.78176 1.21644 1.46153 1.72960 1.10257 1.08627 1.22188 1.01357 0.77626 1.00197 1.21126 0.95385 0.86436 0.92679 0.94636 1.22595 0.97238 0.97362 0.99088 1.23004 0.98892 0.97041 0.99808 1.21448 0.85432 0.95595 0.92772 1.44474 1.13716 1.00610 1.72541 1.18929 0.88847 0.95365 1.33177 0.90755 1.24911 0.96248 0.98524 1.00075 1.69925 1.14793 1.20424 1.51016 0.86230 0.80326 0.80085 0.79324 1.21080 1.21536 1.20933 0.91119 0.90919 0.95475 0.89630 0.93623 0.90336 0.90739 0.90521 0.90255 0.77479 0.91790 0.91670 0.92467 0.91838 0.92370 0.92340 0.95610 0.91010 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.75 16 2 N -0.50 -6.24 4.76 -231.74 -1.10 -7.34 16 3 C 0.04 0.33 6.59 -1.63 -0.01 0.32 16 4 C -0.12 -1.08 7.05 -24.87 -0.18 -1.26 16 5 C -0.12 -1.15 6.56 -25.37 -0.17 -1.32 16 6 C 0.05 0.57 2.87 -67.79 -0.19 0.38 16 7 H 0.07 0.71 7.74 -51.93 -0.40 0.31 16 8 C 0.51 8.37 6.87 -10.99 -0.08 8.29 16 9 O -0.52 -11.09 16.55 5.55 0.09 -11.00 16 10 N -0.73 -11.13 5.36 -60.29 -0.32 -11.45 16 11 C 0.11 2.20 5.10 -4.04 -0.02 2.18 16 12 C 0.15 3.02 3.19 -66.95 -0.21 2.80 16 13 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.12 -2.07 6.20 -24.89 -0.15 -2.23 16 15 C -0.15 -2.72 7.08 -24.59 -0.17 -2.90 16 16 C 0.17 4.13 5.41 -2.54 -0.01 4.12 16 17 N -0.59 -14.73 3.13 -162.58 -0.51 -15.24 16 18 C -0.23 -6.49 9.72 -15.06 -0.15 -6.64 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 20 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 21 N -0.92 -26.83 10.58 55.49 0.59 -26.25 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.24 8.01 -51.93 -0.42 -0.18 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.35 7.97 -51.93 -0.41 -0.06 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 35 H 0.39 4.70 8.40 -40.82 -0.34 4.35 16 36 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 37 H 0.06 1.48 7.86 -51.92 -0.41 1.07 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 43 H 0.07 1.91 6.94 -51.92 -0.36 1.55 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -33.10 348.81 -9.65 -42.76 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.76 Total: 1.60 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.88 Total: 4.41 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -1.35 Total: -60.28 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.10 -9.65 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.254 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds