Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47851 * 110.99688 * 2 1 4 4 C 1.54909 * 104.89220 * 213.57861 * 3 2 1 5 5 C 1.55439 * 101.52234 * 37.06135 * 4 3 2 6 6 C 1.47436 * 111.00279 * 239.15711 * 2 1 3 7 7 H 1.09007 * 109.88609 * 242.65808 * 6 2 1 8 8 C 1.50695 * 109.89110 * 3.68670 * 6 2 1 9 9 O 1.21281 * 120.00119 * 49.58649 * 8 6 2 10 10 N 1.34781 * 120.00317 * 229.59206 * 8 6 2 11 11 C 1.46498 * 119.99982 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47010 * 184.54061 * 11 10 8 13 13 H 1.08998 * 109.87405 * 57.07478 * 12 11 10 14 14 C 1.54332 * 109.88294 * 295.90129 * 12 11 10 15 15 C 1.55160 * 102.94075 * 218.38889 * 14 12 11 16 16 C 1.54910 * 101.58135 * 35.50351 * 15 14 12 17 17 N 1.47019 * 109.88313 * 178.09093 * 12 11 10 18 18 C 1.36937 * 125.64873 * 298.32653 * 17 12 11 19 19 H 1.07996 * 119.99663 * 347.63624 * 18 17 12 20 20 C 1.38810 * 119.99737 * 167.63993 * 18 17 12 21 21 N 1.31621 * 120.00208 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99687 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47086 * 90.00111 * 22 20 18 24 24 H 1.48502 * 109.47463 * 209.99611 * 22 20 18 25 25 H 1.48499 * 109.47263 * 329.99878 * 22 20 18 26 26 H 1.09007 * 109.46997 * 50.11427 * 1 2 3 27 27 H 1.09004 * 109.46890 * 170.10757 * 1 2 3 28 28 H 1.08997 * 109.47201 * 290.11334 * 1 2 3 29 29 H 1.08998 * 110.37556 * 332.45755 * 3 2 1 30 30 H 1.08992 * 110.37702 * 94.69544 * 3 2 1 31 31 H 1.08995 * 110.99602 * 155.21750 * 4 3 2 32 32 H 1.09002 * 110.98842 * 279.03480 * 4 3 2 33 33 H 1.08995 * 110.69729 * 205.97493 * 5 4 3 34 34 H 1.09001 * 110.84047 * 82.82601 * 5 4 3 35 35 H 0.96996 * 119.99505 * 359.97438 * 10 8 6 36 36 H 1.08993 * 109.47354 * 304.54398 * 11 10 8 37 37 H 1.09004 * 109.46858 * 64.54685 * 11 10 8 38 38 H 1.08999 * 110.71478 * 336.75270 * 14 12 11 39 39 H 1.08992 * 110.71893 * 100.02319 * 14 12 11 40 40 H 1.08993 * 111.00039 * 277.42724 * 15 14 12 41 41 H 1.08995 * 111.00115 * 153.57348 * 15 14 12 42 42 H 1.09000 * 110.36755 * 204.15224 * 16 15 14 43 43 H 1.08997 * 110.45968 * 81.87560 * 16 15 14 44 44 H 0.97004 * 119.99428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3058 1.3051 -0.8280 5 6 2.9159 0.2821 -1.9314 6 6 1.9974 -0.7057 -1.1818 7 1 2.5699 -1.5784 -0.8672 8 6 0.8610 -1.1327 -2.0746 9 8 0.0064 -0.3331 -2.3928 10 7 0.7943 -2.4032 -2.5195 11 6 -0.3108 -2.8184 -3.3870 12 6 -0.2128 -4.3218 -3.6536 13 1 -0.2166 -4.8666 -2.7095 14 6 1.0798 -4.6327 -4.4374 15 6 0.6292 -5.7416 -5.4247 16 6 -0.8175 -5.2962 -5.7536 17 7 -1.3436 -4.7568 -4.4864 18 6 -2.6664 -4.6750 -4.1418 19 1 -2.9461 -4.4537 -3.1224 20 6 -3.6476 -4.8769 -5.1027 21 7 -3.3066 -5.1462 -6.3451 22 14 -5.4521 -4.7661 -4.6325 23 1 -5.9230 -3.3680 -4.8027 24 1 -6.2474 -5.6660 -5.5058 25 1 -5.6204 -5.1760 -3.2151 26 1 -0.3633 0.6590 -0.7886 27 1 -0.3633 -1.0124 -0.1766 28 1 -0.3633 0.3534 0.9650 29 1 1.2889 2.0593 -0.4725 30 1 2.2128 1.7047 1.0183 31 1 3.5504 2.2751 -1.2608 32 1 4.1309 0.9305 -0.2220 33 1 3.8001 -0.2279 -2.3136 34 1 2.3753 0.7723 -2.7411 35 1 1.4779 -3.0426 -2.2653 36 1 -1.2595 -2.5972 -2.8980 37 1 -0.2541 -2.2775 -4.3317 38 1 1.4241 -3.7513 -4.9784 39 1 1.8564 -5.0039 -3.7688 40 1 0.6371 -6.7196 -4.9437 41 1 1.2506 -5.7434 -6.3202 42 1 -1.4126 -6.1496 -6.0787 43 1 -0.8127 -4.5232 -6.5220 44 1 -3.9924 -5.2869 -7.0166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027792753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -0.421944 kcal Electronic energy + Delta-G solvation = -23005.267683 eV Core-core repulsion = 19765.300838 eV Total energy + Delta-G solvation = -3239.966844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58909 -38.15076 -37.19154 -34.31916 -32.50957 -32.13691 -30.27273 -29.43776 -28.30180 -25.65606 -24.94455 -24.00177 -21.94295 -21.43710 -20.36446 -19.90996 -19.29192 -17.39632 -16.66885 -16.32487 -15.59550 -15.42919 -14.94015 -14.75283 -14.35128 -13.94925 -13.82793 -13.45351 -13.33979 -12.90681 -12.50122 -12.07369 -11.96206 -11.89590 -11.76212 -11.56626 -11.39503 -11.33506 -11.20961 -10.99694 -10.94805 -10.81171 -10.23264 -10.12811 -9.97349 -9.88284 -9.76927 -9.67824 -8.75632 -8.61261 -8.26349 -6.87408 -5.77393 -3.14115 2.69876 3.37073 3.41390 3.45476 3.46533 3.94382 4.36765 4.46829 4.50055 4.77782 4.98256 5.15388 5.26331 5.31304 5.37443 5.43960 5.48249 5.54826 5.57815 5.60695 5.64666 5.70406 5.78486 5.89806 5.97675 6.02486 6.10819 6.13850 6.20981 6.43768 6.51346 6.60233 6.68951 6.72708 6.79297 6.84322 7.03063 7.51197 7.57758 7.74783 7.78129 8.24054 8.43067 9.16049 9.76626 10.42895 11.33833 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.004263 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.970528 B = 6567.224002 C = 7525.140753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.511 5.511 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.128 4.128 6 C 0.052 3.948 7 H 0.100 0.900 8 C 0.496 3.504 9 O -0.541 6.541 10 N -0.718 5.718 11 C 0.108 3.892 12 C 0.152 3.848 13 H 0.038 0.962 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.233 4.233 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.396 0.604 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.024 0.976 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.904 7.516 9.332 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.236 5.236 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.060 4.060 7 H 0.118 0.882 8 C 0.281 3.719 9 O -0.419 6.419 10 N -0.369 5.369 11 C -0.017 4.017 12 C 0.043 3.957 13 H 0.056 0.944 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.046 3.954 17 N -0.314 5.314 18 C -0.361 4.361 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.042 0.958 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.165 7.758 9.415 18.694 hybrid contribution -1.034 0.176 -0.432 1.134 sum 13.132 7.934 8.983 17.779 Atomic orbital electron populations 1.22946 0.86666 1.02915 1.01587 1.64026 1.09385 1.14497 1.35655 1.23146 0.95700 0.89620 1.00519 1.22742 0.97695 0.99298 0.96680 1.22779 0.99045 0.96524 0.98360 1.22612 0.94466 0.99108 0.89799 0.88215 1.20962 0.87192 0.82642 0.81147 1.90681 1.41212 1.52027 1.57950 1.46267 1.28737 1.11041 1.50837 1.22241 0.88594 0.97670 0.93168 1.21128 0.88985 0.90782 0.94769 0.94450 1.22616 0.96422 0.99117 0.98370 1.23002 1.00056 0.97617 0.98005 1.21506 0.88320 0.98042 0.87578 1.44503 1.00671 1.70093 1.16124 1.18998 0.80236 1.42827 0.94076 0.90627 1.24874 0.98211 1.01548 0.95263 1.69937 1.31682 1.53549 1.01140 0.86139 0.84657 0.77589 0.77511 1.21421 1.21608 1.20561 0.91552 0.91740 0.92132 0.93040 0.89988 0.90514 0.90425 0.90087 0.90478 0.77027 0.91331 0.92029 0.91845 0.92339 0.92258 0.92334 0.90473 0.95834 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.16 60.06 0.49 0.58 16 2 N -0.51 -6.32 5.44 -232.95 -1.27 -7.59 16 3 C 0.04 0.39 6.72 -2.29 -0.02 0.37 16 4 C -0.13 -1.07 7.10 -24.43 -0.17 -1.24 16 5 C -0.13 -1.29 6.47 -24.74 -0.16 -1.45 16 6 C 0.05 0.61 3.83 -67.88 -0.26 0.35 16 7 H 0.10 1.00 7.97 -51.93 -0.41 0.58 16 8 C 0.50 7.62 4.99 -10.99 -0.05 7.56 16 9 O -0.54 -10.41 13.65 5.56 0.08 -10.33 16 10 N -0.72 -10.67 5.38 -60.30 -0.32 -10.99 16 11 C 0.11 2.08 5.06 -4.04 -0.02 2.06 16 12 C 0.15 2.98 3.26 -66.95 -0.22 2.76 16 13 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.13 -2.07 5.94 -24.89 -0.15 -2.22 16 15 C -0.15 -2.68 7.09 -24.58 -0.17 -2.85 16 16 C 0.17 4.04 5.45 -2.52 -0.01 4.03 16 17 N -0.59 -14.62 3.13 -162.56 -0.51 -15.12 16 18 C -0.23 -6.40 9.78 -15.06 -0.15 -6.55 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 21 N -0.92 -26.66 10.49 55.49 0.58 -26.07 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H 0.07 1.06 5.81 -51.92 -0.30 0.76 16 27 H 0.06 1.00 6.85 -51.93 -0.36 0.64 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.57 7.61 -51.93 -0.40 0.17 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 35 H 0.40 4.68 8.02 -40.82 -0.33 4.35 16 36 H 0.07 1.52 7.93 -51.93 -0.41 1.10 16 37 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 38 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 2.05 6.76 -51.93 -0.35 1.69 16 43 H 0.02 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -31.35 340.45 -9.88 -41.24 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.56 Total: 3.32 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.99 Total: 3.25 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -1.52 Total: -59.78 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.35 -9.88 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.816 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds