Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47851 * 110.99688 * 2 1 4 4 C 1.54909 * 104.89220 * 213.57861 * 3 2 1 5 5 C 1.55439 * 101.52234 * 37.06135 * 4 3 2 6 6 C 1.47436 * 111.00279 * 239.15711 * 2 1 3 7 7 H 1.09007 * 109.88609 * 242.65808 * 6 2 1 8 8 C 1.50695 * 109.89110 * 3.68670 * 6 2 1 9 9 O 1.21281 * 120.00119 * 49.58649 * 8 6 2 10 10 N 1.34781 * 120.00317 * 229.59206 * 8 6 2 11 11 C 1.46498 * 119.99982 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47010 * 184.54061 * 11 10 8 13 13 H 1.08998 * 109.87405 * 57.07478 * 12 11 10 14 14 C 1.54332 * 109.88294 * 295.90129 * 12 11 10 15 15 C 1.55160 * 102.94075 * 218.38889 * 14 12 11 16 16 C 1.54910 * 101.58135 * 35.50351 * 15 14 12 17 17 N 1.47019 * 109.88313 * 178.09093 * 12 11 10 18 18 C 1.36937 * 125.64873 * 298.32653 * 17 12 11 19 19 H 1.07996 * 119.99663 * 347.63624 * 18 17 12 20 20 C 1.38810 * 119.99737 * 167.63993 * 18 17 12 21 21 N 1.31621 * 120.00208 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99687 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47086 * 90.00111 * 22 20 18 24 24 H 1.48502 * 109.47463 * 209.99611 * 22 20 18 25 25 H 1.48499 * 109.47263 * 329.99878 * 22 20 18 26 26 H 1.09007 * 109.46997 * 50.11427 * 1 2 3 27 27 H 1.09004 * 109.46890 * 170.10757 * 1 2 3 28 28 H 1.08997 * 109.47201 * 290.11334 * 1 2 3 29 29 H 1.08998 * 110.37556 * 332.45755 * 3 2 1 30 30 H 1.08992 * 110.37702 * 94.69544 * 3 2 1 31 31 H 1.08995 * 110.99602 * 155.21750 * 4 3 2 32 32 H 1.09002 * 110.98842 * 279.03480 * 4 3 2 33 33 H 1.08995 * 110.69729 * 205.97493 * 5 4 3 34 34 H 1.09001 * 110.84047 * 82.82601 * 5 4 3 35 35 H 0.96996 * 119.99505 * 359.97438 * 10 8 6 36 36 H 1.08993 * 109.47354 * 304.54398 * 11 10 8 37 37 H 1.09004 * 109.46858 * 64.54685 * 11 10 8 38 38 H 1.08999 * 110.71478 * 336.75270 * 14 12 11 39 39 H 1.08992 * 110.71893 * 100.02319 * 14 12 11 40 40 H 1.08993 * 111.00039 * 277.42724 * 15 14 12 41 41 H 1.08995 * 111.00115 * 153.57348 * 15 14 12 42 42 H 1.09000 * 110.36755 * 204.15224 * 16 15 14 43 43 H 1.08997 * 110.45968 * 81.87560 * 16 15 14 44 44 H 0.97004 * 119.99428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3058 1.3051 -0.8280 5 6 2.9159 0.2821 -1.9314 6 6 1.9974 -0.7057 -1.1818 7 1 2.5699 -1.5784 -0.8672 8 6 0.8610 -1.1327 -2.0746 9 8 0.0064 -0.3331 -2.3928 10 7 0.7943 -2.4032 -2.5195 11 6 -0.3108 -2.8184 -3.3870 12 6 -0.2128 -4.3218 -3.6536 13 1 -0.2166 -4.8666 -2.7095 14 6 1.0798 -4.6327 -4.4374 15 6 0.6292 -5.7416 -5.4247 16 6 -0.8175 -5.2962 -5.7536 17 7 -1.3436 -4.7568 -4.4864 18 6 -2.6664 -4.6750 -4.1418 19 1 -2.9461 -4.4537 -3.1224 20 6 -3.6476 -4.8769 -5.1027 21 7 -3.3066 -5.1462 -6.3451 22 14 -5.4521 -4.7661 -4.6325 23 1 -5.9230 -3.3680 -4.8027 24 1 -6.2474 -5.6660 -5.5058 25 1 -5.6204 -5.1760 -3.2151 26 1 -0.3633 0.6590 -0.7886 27 1 -0.3633 -1.0124 -0.1766 28 1 -0.3633 0.3534 0.9650 29 1 1.2889 2.0593 -0.4725 30 1 2.2128 1.7047 1.0183 31 1 3.5504 2.2751 -1.2608 32 1 4.1309 0.9305 -0.2220 33 1 3.8001 -0.2279 -2.3136 34 1 2.3753 0.7723 -2.7411 35 1 1.4779 -3.0426 -2.2653 36 1 -1.2595 -2.5972 -2.8980 37 1 -0.2541 -2.2775 -4.3317 38 1 1.4241 -3.7513 -4.9784 39 1 1.8564 -5.0039 -3.7688 40 1 0.6371 -6.7196 -4.9437 41 1 1.2506 -5.7434 -6.3202 42 1 -1.4126 -6.1496 -6.0787 43 1 -0.8127 -4.5232 -6.5220 44 1 -3.9924 -5.2869 -7.0166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027792753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = -23.662967 kcal Electronic energy + Delta-G solvation = -23006.275489 eV Core-core repulsion = 19765.300838 eV Total energy + Delta-G solvation = -3240.974651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73884 -39.62840 -38.46376 -35.81884 -34.43307 -33.04605 -31.65383 -31.06886 -29.67502 -26.81137 -26.60236 -25.67574 -23.12054 -22.21057 -22.03650 -21.30483 -20.77993 -18.88500 -18.25260 -17.56227 -16.98309 -16.63901 -16.33976 -16.16844 -15.82575 -15.55609 -15.08508 -14.84241 -14.53800 -14.13537 -13.82190 -13.66277 -13.60374 -13.23417 -13.07487 -12.90039 -12.86052 -12.72947 -12.49710 -12.28064 -12.05106 -12.03260 -11.89319 -11.73674 -11.69864 -11.47685 -11.41429 -11.02676 -10.72156 -10.13844 -9.35339 -8.89667 -7.90424 -5.28015 1.41423 1.43799 1.48776 1.51552 2.12142 2.47281 2.98152 3.28218 3.48079 3.67345 3.71042 3.83737 3.95915 3.98238 4.17434 4.25136 4.28987 4.37459 4.41074 4.52800 4.53359 4.59140 4.70828 4.80332 4.88778 4.90966 4.97424 4.99065 5.02027 5.07120 5.13410 5.21533 5.27590 5.37167 5.44936 5.54862 5.65850 5.77022 5.77374 5.85783 6.20995 6.54855 7.06683 7.22787 7.73942 8.38656 9.19482 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.004263 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.970528 B = 6567.224002 C = 7525.140753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.511 5.511 3 C 0.031 3.969 4 C -0.116 4.116 5 C -0.128 4.128 6 C 0.055 3.945 7 H 0.131 0.869 8 C 0.493 3.507 9 O -0.586 6.586 10 N -0.703 5.703 11 C 0.131 3.869 12 C 0.148 3.852 13 H 0.048 0.952 14 C -0.113 4.113 15 C -0.133 4.133 16 C 0.171 3.829 17 N -0.612 5.612 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.971 3.029 23 H -0.291 1.291 24 H -0.289 1.289 25 H -0.268 1.268 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.416 0.584 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.040 0.960 43 H -0.010 1.010 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.105 7.412 11.271 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.236 5.236 3 C -0.097 4.097 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.056 4.056 7 H 0.149 0.851 8 C 0.280 3.720 9 O -0.466 6.466 10 N -0.356 5.356 11 C 0.004 3.996 12 C 0.040 3.960 13 H 0.066 0.934 14 C -0.150 4.150 15 C -0.171 4.171 16 C 0.046 3.954 17 N -0.337 5.337 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.252 4.252 21 N -0.593 5.593 22 Si 0.799 3.201 23 H -0.219 1.219 24 H -0.216 1.216 25 H -0.193 1.193 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.008 0.992 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.428 7.645 11.396 22.182 hybrid contribution -2.015 0.261 -0.987 2.259 sum 15.413 7.905 10.409 20.209 Atomic orbital electron populations 1.22760 0.88115 1.00956 1.01397 1.64161 1.07943 1.15933 1.35528 1.23296 0.96316 0.88112 1.01947 1.22761 0.97074 0.99651 0.95845 1.22829 0.99241 0.96581 0.98017 1.22822 0.93122 1.00640 0.89055 0.85139 1.21760 0.87558 0.81964 0.80760 1.90679 1.43181 1.53259 1.59475 1.45994 1.27944 1.11634 1.50007 1.21639 0.88506 0.97299 0.92133 1.21344 0.89158 0.90432 0.95025 0.93386 1.22612 0.95477 0.98732 0.98195 1.22867 0.95985 0.98539 0.99739 1.21329 0.91727 0.95625 0.86725 1.44775 1.01125 1.70770 1.17029 1.19286 0.82092 1.41547 0.94042 0.90826 1.25628 1.01986 1.02212 0.95415 1.70141 1.32277 1.55017 1.01881 0.85202 0.80189 0.77026 0.77696 1.21872 1.21553 1.19302 0.94272 0.93785 0.90585 0.94653 0.88142 0.89160 0.88221 0.87232 0.93069 0.74640 0.95220 0.94863 0.91379 0.87413 0.91148 0.89759 0.94133 0.99228 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.16 127.69 1.04 1.49 16 2 N -0.51 -11.65 5.44 -890.91 -4.85 -16.50 16 3 C 0.03 0.56 6.72 86.77 0.58 1.14 16 4 C -0.12 -1.54 7.10 32.09 0.23 -1.32 16 5 C -0.13 -2.21 6.47 31.88 0.21 -2.00 16 6 C 0.05 1.16 3.83 44.51 0.17 1.33 16 7 H 0.13 2.01 7.97 -2.38 -0.02 1.99 16 8 C 0.49 14.87 4.99 87.65 0.44 15.30 16 9 O -0.59 -23.37 13.65 -3.03 -0.04 -23.41 16 10 N -0.70 -19.99 5.38 -463.06 -2.49 -22.48 16 11 C 0.13 5.11 5.06 86.38 0.44 5.54 16 12 C 0.15 5.65 3.26 45.35 0.15 5.80 16 13 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 14 C -0.11 -3.29 5.94 31.79 0.19 -3.10 16 15 C -0.13 -4.51 7.09 31.99 0.23 -4.28 16 16 C 0.17 8.31 5.45 86.85 0.47 8.79 16 17 N -0.61 -31.02 3.13 -668.23 -2.09 -33.11 16 18 C -0.24 -13.62 9.78 84.03 0.82 -12.80 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 20 C -0.06 -3.40 5.47 84.86 0.46 -2.93 16 21 N -0.95 -57.37 10.49 21.65 0.23 -57.14 16 22 Si 0.97 47.00 29.55 68.60 2.03 49.02 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 H 0.04 1.31 5.81 -2.38 -0.01 1.30 16 27 H 0.04 1.38 6.85 -2.38 -0.02 1.36 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 0.76 7.61 -2.39 -0.02 0.74 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.17 7.78 -2.39 -0.02 1.15 16 35 H 0.42 8.41 8.02 -92.71 -0.74 7.67 16 36 H 0.03 1.37 7.93 -2.39 -0.02 1.35 16 37 H 0.03 1.47 8.09 -2.38 -0.02 1.45 16 38 H 0.07 1.96 7.82 -2.39 -0.02 1.95 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 2.24 6.76 -2.39 -0.02 2.22 16 43 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -73.75 340.45 -1.56 -75.31 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.23 Total: 15.33 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.43 Total: 12.97 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -9.20 Total: -129.23 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.41 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -73.75 -1.56 -75.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.650 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds