Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47850 * 111.00413 * 2 1 4 4 C 1.54901 * 104.79658 * 146.36498 * 3 2 1 5 5 C 1.55396 * 101.74437 * 323.02235 * 4 3 2 6 6 C 1.47442 * 111.00303 * 120.84529 * 2 1 3 7 7 H 1.09007 * 109.89017 * 117.16699 * 6 2 1 8 8 C 1.50700 * 109.88577 * 356.14842 * 6 2 1 9 9 O 1.21282 * 119.99993 * 310.26791 * 8 6 2 10 10 N 1.34777 * 120.00356 * 130.27236 * 8 6 2 11 11 C 1.46495 * 120.00225 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.47321 * 184.47173 * 11 10 8 13 13 H 1.09004 * 109.87327 * 59.04306 * 12 11 10 14 14 C 1.54317 * 109.88191 * 298.03170 * 12 11 10 15 15 C 1.55158 * 102.94091 * 218.23546 * 14 12 11 16 16 C 1.54907 * 101.58366 * 35.50182 * 15 14 12 17 17 N 1.47019 * 110.01083 * 180.14396 * 12 11 10 18 18 C 1.36941 * 125.64827 * 298.38289 * 17 12 11 19 19 H 1.08000 * 120.00162 * 347.41446 * 18 17 12 20 20 C 1.38814 * 119.99621 * 167.41846 * 18 17 12 21 21 N 1.31614 * 120.00211 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99605 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47138 * 90.00245 * 22 20 18 24 24 H 1.48504 * 109.46710 * 210.00109 * 22 20 18 25 25 H 1.48499 * 109.47267 * 330.00054 * 22 20 18 26 26 H 1.09007 * 109.46680 * 309.61130 * 1 2 3 27 27 H 1.08996 * 109.47236 * 69.60767 * 1 2 3 28 28 H 1.08995 * 109.47009 * 189.61545 * 1 2 3 29 29 H 1.09001 * 110.37253 * 265.19851 * 3 2 1 30 30 H 1.09003 * 110.36680 * 27.53387 * 3 2 1 31 31 H 1.08996 * 110.98982 * 81.02205 * 4 3 2 32 32 H 1.08995 * 110.99398 * 204.83933 * 4 3 2 33 33 H 1.09003 * 110.67904 * 277.17436 * 5 4 3 34 34 H 1.08998 * 110.84952 * 153.85997 * 5 4 3 35 35 H 0.96997 * 119.99678 * 0.02562 * 10 8 6 36 36 H 1.08999 * 109.47487 * 64.46848 * 11 10 8 37 37 H 1.09006 * 109.47199 * 304.47244 * 11 10 8 38 38 H 1.08997 * 110.71958 * 336.59565 * 14 12 11 39 39 H 1.09000 * 110.72242 * 99.87139 * 14 12 11 40 40 H 1.09007 * 111.00424 * 153.58022 * 15 14 12 41 41 H 1.09001 * 111.00176 * 277.38172 * 15 14 12 42 42 H 1.08994 * 110.36832 * 81.83288 * 16 15 14 43 43 H 1.08999 * 110.36275 * 204.15468 * 16 15 14 44 44 H 0.97001 * 119.99866 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3048 1.3026 0.8295 5 6 2.9183 0.2788 1.9328 6 6 1.9975 -0.7057 1.1818 7 1 2.5673 -1.5802 0.8674 8 6 0.8612 -1.1292 2.0765 9 8 0.0103 -0.3266 2.3971 10 7 0.7905 -2.3998 2.5206 11 6 -0.3138 -2.8113 3.3908 12 6 -0.0987 -4.2586 3.8380 13 1 0.8486 -4.3451 4.3703 14 6 -0.0977 -5.1928 2.6097 15 6 -0.8456 -6.4494 3.1283 16 6 -1.8990 -5.8172 4.0718 17 7 -1.2029 -4.6851 4.7100 18 6 -1.5300 -4.1244 5.9157 19 1 -0.8467 -3.4397 6.3960 20 6 -2.7398 -4.4362 6.5208 21 7 -3.5722 -5.2711 5.9358 22 14 -3.1856 -3.6719 8.1659 23 1 -3.9119 -2.3968 7.9388 24 1 -4.0528 -4.6067 8.9272 25 1 -1.9466 -3.4048 8.9397 26 1 -0.3633 0.6553 0.7918 27 1 -0.3633 0.3581 -0.9632 28 1 -0.3633 -1.0132 0.1716 29 1 2.2148 1.7038 -1.0182 30 1 1.2890 2.0592 0.4724 31 1 4.1302 0.9281 0.2242 32 1 3.5497 2.2718 1.2639 33 1 2.3784 0.7705 2.7421 34 1 3.8019 -0.2337 2.3131 35 1 1.4713 -3.0415 2.2645 36 1 -1.2542 -2.7356 2.8450 37 1 -0.3483 -2.1619 4.2657 38 1 -0.6375 -4.7382 1.7791 39 1 0.9218 -5.4441 2.3172 40 1 -1.3258 -6.9842 2.3088 41 1 -0.1714 -7.1060 3.6784 42 1 -2.7559 -5.4617 3.4996 43 1 -2.2170 -6.5395 4.8235 44 1 -4.4178 -5.4887 6.3584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027792754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -0.613178 kcal Electronic energy + Delta-G solvation = -23009.745760 eV Core-core repulsion = 19769.770623 eV Total energy + Delta-G solvation = -3239.975137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59237 -38.15312 -37.18930 -34.32018 -32.50921 -32.14272 -30.27152 -29.43975 -28.29811 -25.66443 -24.95069 -24.00192 -21.94142 -21.43661 -20.37758 -19.86989 -19.30884 -17.40160 -16.69674 -16.24244 -15.65557 -15.31925 -15.13678 -14.69935 -14.29470 -13.98311 -13.81863 -13.53601 -13.30112 -12.85566 -12.40193 -12.18757 -11.99640 -11.88822 -11.74851 -11.55560 -11.42606 -11.33103 -11.20205 -10.99580 -10.94898 -10.81418 -10.22579 -10.13109 -9.94908 -9.87958 -9.77936 -9.68176 -8.77454 -8.60377 -8.26628 -6.87394 -5.77608 -3.14369 2.69945 3.36840 3.41161 3.45165 3.46089 3.93867 4.36731 4.46737 4.50232 4.78164 4.98158 5.15526 5.26182 5.31289 5.37674 5.42861 5.48698 5.54914 5.57920 5.60564 5.64836 5.70667 5.78727 5.88998 5.98355 6.02442 6.09806 6.13637 6.21615 6.44237 6.51439 6.60280 6.68802 6.72341 6.79284 6.83815 7.02999 7.51225 7.57852 7.74697 7.77922 8.23888 8.42998 9.15882 9.76461 10.42899 11.33700 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022007 B = 0.004154 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.021615 B = 6739.413155 C = 7411.984105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.511 5.511 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.100 0.900 8 C 0.496 3.504 9 O -0.541 6.541 10 N -0.718 5.718 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.128 4.128 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.589 5.589 18 C -0.234 4.234 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.024 0.976 43 H 0.077 0.923 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.344 6.760 -11.755 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.235 5.235 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.060 4.060 7 H 0.118 0.882 8 C 0.280 3.720 9 O -0.419 6.419 10 N -0.369 5.369 11 C -0.017 4.017 12 C 0.044 3.956 13 H 0.055 0.945 14 C -0.166 4.166 15 C -0.187 4.187 16 C 0.046 3.954 17 N -0.314 5.314 18 C -0.362 4.362 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.095 0.905 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.645 7.021 -11.779 18.653 hybrid contribution -0.406 0.478 1.411 1.544 sum 12.239 7.499 -10.369 17.707 Atomic orbital electron populations 1.22944 0.86724 1.02851 1.01615 1.64032 1.09345 1.14526 1.35643 1.23147 0.95698 0.89620 1.00498 1.22734 0.97713 0.99306 0.96680 1.22781 0.99062 0.96522 0.98372 1.22615 0.94457 0.99138 0.89777 0.88208 1.20972 0.87151 0.82601 0.81242 1.90679 1.41475 1.51834 1.57885 1.46266 1.28991 1.10943 1.50680 1.22230 0.88161 0.98177 0.93083 1.21119 0.93358 0.90291 0.90876 0.94492 1.22614 0.99494 0.97104 0.97354 1.23005 0.99690 0.96428 0.99560 1.21499 0.90864 0.89503 0.93528 1.44499 1.33431 1.35033 1.18413 1.18998 1.00292 1.22834 0.94058 0.90642 1.24878 0.96020 0.99689 0.99281 1.69933 1.10336 1.37115 1.38882 0.86142 0.78141 0.78568 0.83060 1.21424 1.21602 1.20579 0.91521 0.92137 0.91799 0.89962 0.93021 0.90451 0.90532 0.90452 0.90022 0.77020 0.91982 0.91403 0.91827 0.92338 0.92327 0.92272 0.95824 0.90504 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.16 60.06 0.49 0.58 16 2 N -0.51 -6.25 5.44 -232.95 -1.27 -7.51 16 3 C 0.04 0.39 6.73 -2.30 -0.02 0.37 16 4 C -0.13 -1.08 7.08 -24.46 -0.17 -1.25 16 5 C -0.13 -1.31 6.48 -24.77 -0.16 -1.48 16 6 C 0.05 0.61 3.83 -67.88 -0.26 0.35 16 7 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16 8 C 0.50 7.61 4.98 -10.99 -0.05 7.56 16 9 O -0.54 -10.40 13.66 5.56 0.08 -10.33 16 10 N -0.72 -10.67 5.36 -60.29 -0.32 -10.99 16 11 C 0.11 2.09 5.06 -4.04 -0.02 2.07 16 12 C 0.15 2.98 3.28 -66.96 -0.22 2.76 16 13 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 14 C -0.13 -2.09 5.82 -24.90 -0.14 -2.23 16 15 C -0.15 -2.69 7.08 -24.58 -0.17 -2.87 16 16 C 0.17 4.06 5.45 -2.53 -0.01 4.05 16 17 N -0.59 -14.61 3.13 -162.58 -0.51 -15.12 16 18 C -0.23 -6.41 9.83 -15.06 -0.15 -6.56 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 21 N -0.92 -26.64 10.50 55.49 0.58 -26.06 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.07 1.06 5.79 -51.93 -0.30 0.76 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.96 6.88 -51.93 -0.36 0.60 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.57 7.62 -51.93 -0.40 0.18 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 4.68 7.94 -40.82 -0.32 4.36 16 36 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 37 H 0.07 1.49 8.00 -51.93 -0.42 1.08 16 38 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 2.04 6.78 -51.93 -0.35 1.69 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -31.31 340.45 -9.89 -41.20 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.56 Total: 3.34 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.99 Total: 3.21 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -1.52 Total: -59.68 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.31 -9.89 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.587 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds