Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47850 * 111.00413 * 2 1 4 4 C 1.54901 * 104.79658 * 146.36498 * 3 2 1 5 5 C 1.55396 * 101.74437 * 323.02235 * 4 3 2 6 6 C 1.47442 * 111.00303 * 120.84529 * 2 1 3 7 7 H 1.09007 * 109.89017 * 117.16699 * 6 2 1 8 8 C 1.50700 * 109.88577 * 356.14842 * 6 2 1 9 9 O 1.21282 * 119.99993 * 310.26791 * 8 6 2 10 10 N 1.34777 * 120.00356 * 130.27236 * 8 6 2 11 11 C 1.46495 * 120.00225 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.47321 * 184.47173 * 11 10 8 13 13 H 1.09004 * 109.87327 * 59.04306 * 12 11 10 14 14 C 1.54317 * 109.88191 * 298.03170 * 12 11 10 15 15 C 1.55158 * 102.94091 * 218.23546 * 14 12 11 16 16 C 1.54907 * 101.58366 * 35.50182 * 15 14 12 17 17 N 1.47019 * 110.01083 * 180.14396 * 12 11 10 18 18 C 1.36941 * 125.64827 * 298.38289 * 17 12 11 19 19 H 1.08000 * 120.00162 * 347.41446 * 18 17 12 20 20 C 1.38814 * 119.99621 * 167.41846 * 18 17 12 21 21 N 1.31614 * 120.00211 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99605 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47138 * 90.00245 * 22 20 18 24 24 H 1.48504 * 109.46710 * 210.00109 * 22 20 18 25 25 H 1.48499 * 109.47267 * 330.00054 * 22 20 18 26 26 H 1.09007 * 109.46680 * 309.61130 * 1 2 3 27 27 H 1.08996 * 109.47236 * 69.60767 * 1 2 3 28 28 H 1.08995 * 109.47009 * 189.61545 * 1 2 3 29 29 H 1.09001 * 110.37253 * 265.19851 * 3 2 1 30 30 H 1.09003 * 110.36680 * 27.53387 * 3 2 1 31 31 H 1.08996 * 110.98982 * 81.02205 * 4 3 2 32 32 H 1.08995 * 110.99398 * 204.83933 * 4 3 2 33 33 H 1.09003 * 110.67904 * 277.17436 * 5 4 3 34 34 H 1.08998 * 110.84952 * 153.85997 * 5 4 3 35 35 H 0.96997 * 119.99678 * 0.02562 * 10 8 6 36 36 H 1.08999 * 109.47487 * 64.46848 * 11 10 8 37 37 H 1.09006 * 109.47199 * 304.47244 * 11 10 8 38 38 H 1.08997 * 110.71958 * 336.59565 * 14 12 11 39 39 H 1.09000 * 110.72242 * 99.87139 * 14 12 11 40 40 H 1.09007 * 111.00424 * 153.58022 * 15 14 12 41 41 H 1.09001 * 111.00176 * 277.38172 * 15 14 12 42 42 H 1.08994 * 110.36832 * 81.83288 * 16 15 14 43 43 H 1.08999 * 110.36275 * 204.15468 * 16 15 14 44 44 H 0.97001 * 119.99866 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3048 1.3026 0.8295 5 6 2.9183 0.2788 1.9328 6 6 1.9975 -0.7057 1.1818 7 1 2.5673 -1.5802 0.8674 8 6 0.8612 -1.1292 2.0765 9 8 0.0103 -0.3266 2.3971 10 7 0.7905 -2.3998 2.5206 11 6 -0.3138 -2.8113 3.3908 12 6 -0.0987 -4.2586 3.8380 13 1 0.8486 -4.3451 4.3703 14 6 -0.0977 -5.1928 2.6097 15 6 -0.8456 -6.4494 3.1283 16 6 -1.8990 -5.8172 4.0718 17 7 -1.2029 -4.6851 4.7100 18 6 -1.5300 -4.1244 5.9157 19 1 -0.8467 -3.4397 6.3960 20 6 -2.7398 -4.4362 6.5208 21 7 -3.5722 -5.2711 5.9358 22 14 -3.1856 -3.6719 8.1659 23 1 -3.9119 -2.3968 7.9388 24 1 -4.0528 -4.6067 8.9272 25 1 -1.9466 -3.4048 8.9397 26 1 -0.3633 0.6553 0.7918 27 1 -0.3633 0.3581 -0.9632 28 1 -0.3633 -1.0132 0.1716 29 1 2.2148 1.7038 -1.0182 30 1 1.2890 2.0592 0.4724 31 1 4.1302 0.9281 0.2242 32 1 3.5497 2.2718 1.2639 33 1 2.3784 0.7705 2.7421 34 1 3.8019 -0.2337 2.3131 35 1 1.4713 -3.0415 2.2645 36 1 -1.2542 -2.7356 2.8450 37 1 -0.3483 -2.1619 4.2657 38 1 -0.6375 -4.7382 1.7791 39 1 0.9218 -5.4441 2.3172 40 1 -1.3258 -6.9842 2.3088 41 1 -0.1714 -7.1060 3.6784 42 1 -2.7559 -5.4617 3.4996 43 1 -2.2170 -6.5395 4.8235 44 1 -4.4178 -5.4887 6.3584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027792754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -23.766666 kcal Electronic energy + Delta-G solvation = -23010.749771 eV Core-core repulsion = 19769.770623 eV Total energy + Delta-G solvation = -3240.979148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74058 -39.63152 -38.46212 -35.82134 -34.42994 -33.04939 -31.65535 -31.07083 -29.67342 -26.81397 -26.60243 -25.67880 -23.12141 -22.21397 -22.04403 -21.26928 -20.79999 -18.89601 -18.25172 -17.47780 -17.07656 -16.55033 -16.34815 -16.27956 -15.73870 -15.63535 -15.04087 -14.87923 -14.52791 -14.05237 -13.83104 -13.66037 -13.60300 -13.37485 -12.99843 -12.92095 -12.85004 -12.72450 -12.49464 -12.27460 -12.06862 -12.03263 -11.89172 -11.74276 -11.68007 -11.47372 -11.41747 -11.03538 -10.72091 -10.14420 -9.34610 -8.89755 -7.90305 -5.28014 1.41605 1.44111 1.48858 1.51785 2.11969 2.47434 2.98405 3.28505 3.47326 3.67398 3.71644 3.82921 3.96195 3.97380 4.16908 4.24923 4.29480 4.37892 4.41014 4.52392 4.53117 4.59607 4.70602 4.80364 4.88344 4.90765 4.97597 4.98849 5.01732 5.06879 5.13028 5.20604 5.27194 5.37591 5.44959 5.54595 5.65502 5.76529 5.77439 5.85974 6.20899 6.54780 7.06642 7.22742 7.73949 8.38908 9.19772 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022007 B = 0.004154 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.021615 B = 6739.413155 C = 7411.984105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.510 5.510 3 C 0.031 3.969 4 C -0.116 4.116 5 C -0.129 4.129 6 C 0.055 3.945 7 H 0.132 0.868 8 C 0.492 3.508 9 O -0.586 6.586 10 N -0.703 5.703 11 C 0.131 3.869 12 C 0.148 3.852 13 H 0.050 0.950 14 C -0.113 4.113 15 C -0.133 4.133 16 C 0.172 3.828 17 N -0.612 5.612 18 C -0.241 4.241 19 H 0.075 0.925 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.971 3.029 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.267 1.267 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.416 0.584 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.071 0.929 42 H -0.011 1.011 43 H 0.040 0.960 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 6.748 -13.365 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.234 5.234 3 C -0.096 4.096 4 C -0.154 4.154 5 C -0.168 4.168 6 C -0.056 4.056 7 H 0.149 0.851 8 C 0.279 3.721 9 O -0.466 6.466 10 N -0.356 5.356 11 C 0.004 3.996 12 C 0.041 3.959 13 H 0.068 0.932 14 C -0.151 4.151 15 C -0.171 4.171 16 C 0.047 3.953 17 N -0.337 5.337 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.799 3.201 23 H -0.219 1.219 24 H -0.216 1.216 25 H -0.192 1.192 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.007 0.993 43 H 0.059 0.941 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.120 7.003 -13.419 22.113 hybrid contribution -1.445 0.538 1.874 2.427 sum 14.676 7.541 -11.544 20.138 Atomic orbital electron populations 1.22767 0.88062 1.01044 1.01417 1.64172 1.07995 1.15868 1.35382 1.23296 0.96226 0.88178 1.01931 1.22751 0.97195 0.99580 0.95838 1.22834 0.99238 0.96667 0.98056 1.22823 0.93081 1.00653 0.89050 0.85065 1.21771 0.87512 0.81921 0.80867 1.90678 1.43436 1.53060 1.59416 1.45993 1.28211 1.11566 1.49800 1.21628 0.88456 0.97505 0.91966 1.21333 0.91880 0.90872 0.91829 0.93186 1.22609 1.02157 0.94867 0.95471 1.22869 0.98162 0.97171 0.98939 1.21315 0.91900 0.88841 0.93287 1.44770 1.34478 1.35779 1.18642 1.19301 1.00269 1.22103 0.95323 0.90712 1.25640 0.96313 1.00637 1.02668 1.70138 1.10440 1.38574 1.40195 0.85197 0.78030 0.77269 0.79583 1.21902 1.21599 1.19218 0.94353 0.90520 0.93593 0.88032 0.94661 0.88219 0.89261 0.93169 0.87341 0.74633 0.95118 0.95029 0.91611 0.87405 0.89863 0.91058 0.99304 0.94121 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.16 127.69 1.04 1.47 16 2 N -0.51 -11.42 5.44 -890.91 -4.85 -16.27 16 3 C 0.03 0.56 6.73 86.77 0.58 1.15 16 4 C -0.12 -1.58 7.08 32.07 0.23 -1.35 16 5 C -0.13 -2.29 6.48 31.86 0.21 -2.09 16 6 C 0.06 1.17 3.83 44.51 0.17 1.34 16 7 H 0.13 2.00 7.97 -2.38 -0.02 1.98 16 8 C 0.49 14.84 4.98 87.66 0.44 15.28 16 9 O -0.59 -23.35 13.66 -3.04 -0.04 -23.39 16 10 N -0.70 -19.96 5.36 -463.06 -2.48 -22.45 16 11 C 0.13 5.11 5.06 86.38 0.44 5.55 16 12 C 0.15 5.66 3.28 45.34 0.15 5.81 16 13 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 14 C -0.11 -3.35 5.82 31.78 0.19 -3.17 16 15 C -0.13 -4.55 7.08 31.99 0.23 -4.32 16 16 C 0.17 8.37 5.45 86.85 0.47 8.84 16 17 N -0.61 -30.97 3.13 -668.27 -2.09 -33.06 16 18 C -0.24 -13.59 9.83 84.03 0.83 -12.77 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 21 N -0.95 -57.41 10.50 21.65 0.23 -57.18 16 22 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 H 0.04 1.27 5.79 -2.38 -0.01 1.25 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.39 6.88 -2.39 -0.02 1.37 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.03 0.76 7.62 -2.39 -0.02 0.74 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.18 7.77 -2.39 -0.02 1.16 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.42 8.40 7.94 -92.71 -0.74 7.67 16 36 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 37 H 0.03 1.45 8.00 -2.38 -0.02 1.43 16 38 H 0.07 1.95 7.84 -2.39 -0.02 1.93 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 42 H -0.01 -0.61 8.10 -2.39 -0.02 -0.62 16 43 H 0.04 2.25 6.78 -2.39 -0.02 2.23 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -73.52 340.45 -1.55 -75.06 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.24 Total: 15.60 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.43 Total: 12.81 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -9.20 Total: -128.95 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -73.52 -1.55 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.295 kcal (2) G-P(sol) polarization free energy of solvation -73.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds