Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47441 * 111.00669 * 2 1 4 4 C 1.54316 * 107.23451 * 123.25824 * 3 2 1 5 5 C 1.55146 * 103.01581 * 22.28721 * 4 3 2 6 6 C 1.47846 * 111.00074 * 120.84821 * 2 1 3 7 7 H 1.08997 * 110.37299 * 332.57148 * 6 2 1 8 8 C 1.50706 * 110.37249 * 94.80070 * 6 2 1 9 9 O 1.21283 * 119.99997 * 18.54936 * 8 6 2 10 10 N 1.34777 * 119.99579 * 198.54400 * 8 6 2 11 11 C 1.46506 * 119.99636 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47014 * 185.65673 * 11 10 8 13 13 H 1.09001 * 109.99920 * 304.85340 * 12 11 10 14 14 C 1.54317 * 109.77432 * 66.00425 * 12 11 10 15 15 C 1.55160 * 102.85944 * 141.88360 * 14 12 11 16 16 C 1.54905 * 101.58296 * 324.30587 * 15 14 12 17 17 N 1.47015 * 109.88204 * 183.75775 * 12 11 10 18 18 C 1.36942 * 125.65171 * 61.67888 * 17 12 11 19 19 H 1.07999 * 119.99381 * 14.59748 * 18 17 12 20 20 C 1.38811 * 119.99850 * 194.32481 * 18 17 12 21 21 N 1.31615 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47353 * 60.00257 * 22 20 18 24 24 H 1.48498 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46901 * 300.00037 * 22 20 18 26 26 H 1.09003 * 109.46454 * 299.15850 * 1 2 3 27 27 H 1.09000 * 109.46872 * 59.14832 * 1 2 3 28 28 H 1.08999 * 109.47501 * 179.15527 * 1 2 3 29 29 H 1.08999 * 109.89083 * 242.67281 * 3 2 1 30 30 H 1.09004 * 109.88256 * 3.85572 * 3 2 1 31 31 H 1.08996 * 110.70823 * 140.66805 * 4 3 2 32 32 H 1.09000 * 110.70784 * 263.73426 * 4 3 2 33 33 H 1.09002 * 110.98952 * 206.25412 * 5 4 3 34 34 H 1.09005 * 110.98768 * 82.44159 * 5 4 3 35 35 H 0.97000 * 120.00382 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.47010 * 65.65537 * 11 10 8 37 37 H 1.09003 * 109.46919 * 305.65797 * 11 10 8 38 38 H 1.09003 * 110.92346 * 23.47369 * 14 12 11 39 39 H 1.08998 * 110.74181 * 260.21483 * 14 12 11 40 40 H 1.08995 * 111.00444 * 206.22780 * 15 14 12 41 41 H 1.09008 * 111.00214 * 82.38325 * 15 14 12 42 42 H 1.08993 * 110.36931 * 278.16832 * 16 15 14 43 43 H 1.09008 * 110.36078 * 155.84618 * 16 15 14 44 44 H 0.97000 * 119.99922 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9976 1.3764 0.0000 4 6 2.9160 1.5135 1.2325 5 6 3.3048 0.0441 1.5437 6 6 1.9989 -0.7077 1.1850 7 1 1.2882 -0.6520 2.0095 8 6 2.2973 -2.1458 0.8472 9 8 2.4207 -2.4837 -0.3110 10 7 2.4270 -3.0564 1.8324 11 6 2.7177 -4.4543 1.5041 12 6 2.6747 -5.2974 2.7801 13 1 3.3547 -4.8826 3.5240 14 6 1.2363 -5.3264 3.3384 15 6 1.0955 -6.7830 3.8542 16 6 1.9172 -7.5669 2.8007 17 7 3.0529 -6.6850 2.4755 18 6 4.2621 -7.0918 1.9777 19 1 5.1072 -6.4195 1.9958 20 6 4.4030 -8.3700 1.4550 21 7 3.3743 -9.1908 1.4374 22 14 6.0522 -8.9245 0.7754 23 1 7.0766 -8.8609 1.8486 24 1 5.9396 -10.3199 0.2801 25 1 6.4514 -8.0333 -0.3434 26 1 -0.3632 0.5007 0.8975 27 1 -0.3633 0.5270 -0.8823 28 1 -0.3634 -1.0275 -0.0152 29 1 2.5698 1.5539 -0.9106 30 1 1.1757 2.0891 0.0689 31 1 3.8003 2.1031 0.9905 32 1 2.3755 1.9572 2.0685 33 1 3.5496 -0.0799 2.5986 34 1 4.1303 -0.2835 0.9117 35 1 2.3280 -2.7863 2.7587 36 1 3.7089 -4.5237 1.0559 37 1 1.9733 -4.8242 0.7988 38 1 0.5093 -5.1238 2.5519 39 1 1.1255 -4.6150 4.1568 40 1 0.0525 -7.0995 3.8507 41 1 1.5311 -6.8895 4.8478 42 1 1.3148 -7.7531 1.9116 43 1 2.2749 -8.5067 3.2213 44 1 3.4729 -10.0842 1.0725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027792755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -6.091299 kcal Electronic energy + Delta-G solvation = -22769.981737 eV Core-core repulsion = 19529.769050 eV Total energy + Delta-G solvation = -3240.212686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05165 -38.24894 -37.29661 -34.11028 -32.48249 -32.25849 -30.23961 -29.40956 -28.25671 -25.86788 -24.89128 -23.95171 -22.02004 -21.26759 -20.29118 -19.87567 -19.28681 -17.38835 -16.59058 -16.32376 -15.53802 -15.21241 -14.86605 -14.62913 -14.23155 -13.89591 -13.81344 -13.52129 -13.33095 -12.93039 -12.79114 -12.25793 -12.05731 -11.87271 -11.73702 -11.69431 -11.44038 -11.39147 -11.24451 -10.98166 -10.92839 -10.75690 -10.21533 -10.11234 -9.92141 -9.82628 -9.70617 -9.41423 -8.60633 -8.51039 -8.42045 -6.82250 -5.75077 -3.11694 2.95135 3.29347 3.42550 3.47088 3.48128 4.02748 4.36418 4.46762 4.51603 4.68358 4.94014 5.06971 5.17176 5.18854 5.30405 5.35816 5.42652 5.46311 5.52937 5.56651 5.59327 5.64298 5.73570 5.80873 5.82551 5.97118 6.09072 6.15769 6.25957 6.47242 6.56603 6.64844 6.69701 6.76838 6.85066 6.87645 7.10779 7.52695 7.62208 7.80072 7.92115 8.27374 8.66126 9.19026 9.79760 10.47122 11.36987 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.003993 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.212115 B = 7011.385796 C = 7669.023825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.044 3.956 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.054 3.946 7 H 0.073 0.927 8 C 0.513 3.487 9 O -0.519 6.519 10 N -0.727 5.727 11 C 0.112 3.888 12 C 0.153 3.847 13 H 0.037 0.963 14 C -0.125 4.125 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.589 5.589 18 C -0.235 4.235 19 H 0.075 0.925 20 C 0.000 4.000 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 19.525 4.531 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.236 5.236 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.155 4.155 6 C -0.058 4.058 7 H 0.091 0.909 8 C 0.297 3.703 9 O -0.393 6.393 10 N -0.379 5.379 11 C -0.014 4.014 12 C 0.044 3.956 13 H 0.054 0.946 14 C -0.163 4.163 15 C -0.188 4.188 16 C 0.048 3.952 17 N -0.314 5.314 18 C -0.363 4.363 19 H 0.093 0.907 20 C -0.198 4.198 21 N -0.562 5.562 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.221 18.757 3.096 19.715 hybrid contribution 0.427 0.196 0.689 0.834 sum -4.793 18.954 3.784 19.913 Atomic orbital electron populations 1.22553 0.87119 1.02512 1.00380 1.63066 1.07984 1.13487 1.39095 1.22860 0.97946 0.88822 0.98772 1.22789 1.00214 0.96790 0.98108 1.22652 0.96444 0.94163 1.02233 1.22554 0.97701 0.93097 0.92465 0.90891 1.20266 0.77673 0.86515 0.85885 1.90705 1.48562 1.80463 1.19554 1.46149 1.72910 1.09882 1.08984 1.22183 1.01427 0.77867 0.99880 1.21114 0.93712 0.87653 0.93098 0.94589 1.22596 0.96854 0.97444 0.99432 1.23012 0.99784 0.95843 1.00133 1.21451 0.86995 0.93461 0.93322 1.44469 1.12701 0.98818 1.75388 1.18934 0.86252 0.98117 1.32999 0.90723 1.24903 0.97628 0.97301 0.99936 1.69925 1.28908 1.07340 1.50014 0.86229 0.83007 0.77631 0.79091 1.21078 1.21549 1.20921 0.95589 0.91059 0.91208 0.90174 0.92521 0.90283 0.91262 0.89951 0.89831 0.77484 0.91670 0.91754 0.91870 0.92512 0.92385 0.92335 0.95608 0.90995 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.07 0.55 0.79 16 2 N -0.51 -6.37 4.69 -232.98 -1.09 -7.46 16 3 C 0.04 0.41 6.90 -2.84 -0.02 0.39 16 4 C -0.14 -1.10 6.94 -24.91 -0.17 -1.28 16 5 C -0.12 -1.14 6.48 -24.59 -0.16 -1.30 16 6 C 0.05 0.64 2.84 -67.34 -0.19 0.45 16 7 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 8 C 0.51 8.35 7.11 -10.98 -0.08 8.27 16 9 O -0.52 -11.08 16.58 5.55 0.09 -10.99 16 10 N -0.73 -11.07 5.34 -60.29 -0.32 -11.39 16 11 C 0.11 2.20 5.09 -4.04 -0.02 2.18 16 12 C 0.15 3.02 3.20 -66.96 -0.21 2.81 16 13 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 14 C -0.13 -2.09 6.16 -24.90 -0.15 -2.24 16 15 C -0.15 -2.74 7.08 -24.58 -0.17 -2.91 16 16 C 0.17 4.14 5.41 -2.53 -0.01 4.12 16 17 N -0.59 -14.73 3.13 -162.58 -0.51 -15.24 16 18 C -0.23 -6.48 9.74 -15.06 -0.15 -6.62 16 19 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 20 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 21 N -0.92 -26.84 10.58 55.49 0.59 -26.25 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H 0.03 0.22 8.09 -51.93 -0.42 -0.20 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.44 7.58 -51.93 -0.39 0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 35 H 0.39 4.66 8.39 -40.82 -0.34 4.31 16 36 H 0.06 1.46 7.88 -51.93 -0.41 1.05 16 37 H 0.06 1.43 8.04 -51.93 -0.42 1.02 16 38 H 0.06 1.06 7.79 -51.93 -0.40 0.65 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 43 H 0.07 1.91 6.93 -51.92 -0.36 1.55 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.05 348.90 -9.66 -42.71 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.76 Total: 1.58 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.89 Total: 4.54 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -1.34 Total: -60.35 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.05 -9.66 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.623 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds