Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47441 * 111.00669 * 2 1 4 4 C 1.54316 * 107.23451 * 123.25824 * 3 2 1 5 5 C 1.55146 * 103.01581 * 22.28721 * 4 3 2 6 6 C 1.47846 * 111.00074 * 120.84821 * 2 1 3 7 7 H 1.08997 * 110.37299 * 332.57148 * 6 2 1 8 8 C 1.50706 * 110.37249 * 94.80070 * 6 2 1 9 9 O 1.21283 * 119.99997 * 18.54936 * 8 6 2 10 10 N 1.34777 * 119.99579 * 198.54400 * 8 6 2 11 11 C 1.46506 * 119.99636 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47014 * 185.65673 * 11 10 8 13 13 H 1.09001 * 109.99920 * 304.85340 * 12 11 10 14 14 C 1.54317 * 109.77432 * 66.00425 * 12 11 10 15 15 C 1.55160 * 102.85944 * 141.88360 * 14 12 11 16 16 C 1.54905 * 101.58296 * 324.30587 * 15 14 12 17 17 N 1.47015 * 109.88204 * 183.75775 * 12 11 10 18 18 C 1.36942 * 125.65171 * 61.67888 * 17 12 11 19 19 H 1.07999 * 119.99381 * 14.59748 * 18 17 12 20 20 C 1.38811 * 119.99850 * 194.32481 * 18 17 12 21 21 N 1.31615 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47353 * 60.00257 * 22 20 18 24 24 H 1.48498 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46901 * 300.00037 * 22 20 18 26 26 H 1.09003 * 109.46454 * 299.15850 * 1 2 3 27 27 H 1.09000 * 109.46872 * 59.14832 * 1 2 3 28 28 H 1.08999 * 109.47501 * 179.15527 * 1 2 3 29 29 H 1.08999 * 109.89083 * 242.67281 * 3 2 1 30 30 H 1.09004 * 109.88256 * 3.85572 * 3 2 1 31 31 H 1.08996 * 110.70823 * 140.66805 * 4 3 2 32 32 H 1.09000 * 110.70784 * 263.73426 * 4 3 2 33 33 H 1.09002 * 110.98952 * 206.25412 * 5 4 3 34 34 H 1.09005 * 110.98768 * 82.44159 * 5 4 3 35 35 H 0.97000 * 120.00382 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.47010 * 65.65537 * 11 10 8 37 37 H 1.09003 * 109.46919 * 305.65797 * 11 10 8 38 38 H 1.09003 * 110.92346 * 23.47369 * 14 12 11 39 39 H 1.08998 * 110.74181 * 260.21483 * 14 12 11 40 40 H 1.08995 * 111.00444 * 206.22780 * 15 14 12 41 41 H 1.09008 * 111.00214 * 82.38325 * 15 14 12 42 42 H 1.08993 * 110.36931 * 278.16832 * 16 15 14 43 43 H 1.09008 * 110.36078 * 155.84618 * 16 15 14 44 44 H 0.97000 * 119.99922 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9976 1.3764 0.0000 4 6 2.9160 1.5135 1.2325 5 6 3.3048 0.0441 1.5437 6 6 1.9989 -0.7077 1.1850 7 1 1.2882 -0.6520 2.0095 8 6 2.2973 -2.1458 0.8472 9 8 2.4207 -2.4837 -0.3110 10 7 2.4270 -3.0564 1.8324 11 6 2.7177 -4.4543 1.5041 12 6 2.6747 -5.2974 2.7801 13 1 3.3547 -4.8826 3.5240 14 6 1.2363 -5.3264 3.3384 15 6 1.0955 -6.7830 3.8542 16 6 1.9172 -7.5669 2.8007 17 7 3.0529 -6.6850 2.4755 18 6 4.2621 -7.0918 1.9777 19 1 5.1072 -6.4195 1.9958 20 6 4.4030 -8.3700 1.4550 21 7 3.3743 -9.1908 1.4374 22 14 6.0522 -8.9245 0.7754 23 1 7.0766 -8.8609 1.8486 24 1 5.9396 -10.3199 0.2801 25 1 6.4514 -8.0333 -0.3434 26 1 -0.3632 0.5007 0.8975 27 1 -0.3633 0.5270 -0.8823 28 1 -0.3634 -1.0275 -0.0152 29 1 2.5698 1.5539 -0.9106 30 1 1.1757 2.0891 0.0689 31 1 3.8003 2.1031 0.9905 32 1 2.3755 1.9572 2.0685 33 1 3.5496 -0.0799 2.5986 34 1 4.1303 -0.2835 0.9117 35 1 2.3280 -2.7863 2.7587 36 1 3.7089 -4.5237 1.0559 37 1 1.9733 -4.8242 0.7988 38 1 0.5093 -5.1238 2.5519 39 1 1.1255 -4.6150 4.1568 40 1 0.0525 -7.0995 3.8507 41 1 1.5311 -6.8895 4.8478 42 1 1.3148 -7.7531 1.9116 43 1 2.2749 -8.5067 3.2213 44 1 3.4729 -10.0842 1.0725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027792755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -30.475177 kcal Electronic energy + Delta-G solvation = -22771.039101 eV Core-core repulsion = 19529.769050 eV Total energy + Delta-G solvation = -3241.270050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18820 -39.60914 -38.70390 -35.68173 -34.40545 -33.04012 -31.60604 -31.04350 -29.63755 -26.78237 -26.59550 -25.62431 -23.12600 -22.06556 -21.93748 -21.31655 -20.73564 -18.89168 -18.16182 -17.46974 -16.94464 -16.42918 -16.27748 -16.18174 -15.67751 -15.50919 -14.89775 -14.66400 -14.32916 -14.27029 -13.96420 -13.66657 -13.57394 -13.41398 -13.06956 -12.97670 -12.86642 -12.65673 -12.49040 -12.28307 -12.06882 -12.06496 -11.86307 -11.71582 -11.64650 -11.48943 -11.40488 -10.77350 -10.67745 -10.02524 -9.25224 -8.86302 -7.89174 -5.26774 1.43172 1.47184 1.52505 1.69294 2.09597 2.49001 3.11147 3.30807 3.55777 3.68004 3.76612 3.94206 3.99715 4.00342 4.10733 4.20805 4.27210 4.43377 4.46199 4.46787 4.54225 4.57516 4.73207 4.78315 4.90749 4.95567 4.96829 4.98528 5.00471 5.08176 5.14943 5.22182 5.31055 5.40305 5.46189 5.59577 5.65986 5.77210 5.89290 6.10134 6.22557 6.70957 7.08458 7.39939 7.75888 8.41648 9.21729 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.003993 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.212115 B = 7011.385796 C = 7669.023825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.041 3.959 4 C -0.129 4.129 5 C -0.116 4.116 6 C 0.062 3.938 7 H 0.106 0.894 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.708 5.708 11 C 0.132 3.868 12 C 0.149 3.851 13 H 0.055 0.945 14 C -0.111 4.111 15 C -0.133 4.133 16 C 0.173 3.827 17 N -0.612 5.612 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.059 4.059 21 N -0.946 5.946 22 Si 0.972 3.028 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.284 1.284 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.415 0.585 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.072 0.928 42 H -0.011 1.011 43 H 0.036 0.964 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 22.639 7.032 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.086 4.086 4 C -0.167 4.167 5 C -0.155 4.155 6 C -0.050 4.050 7 H 0.124 0.876 8 C 0.295 3.705 9 O -0.457 6.457 10 N -0.362 5.362 11 C 0.006 3.994 12 C 0.042 3.958 13 H 0.072 0.928 14 C -0.149 4.149 15 C -0.172 4.172 16 C 0.048 3.952 17 N -0.337 5.337 18 C -0.371 4.371 19 H 0.094 0.906 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.800 3.200 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.210 1.210 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.252 0.748 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.007 0.993 43 H 0.055 0.945 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.744 21.935 5.656 23.369 hybrid contribution 0.579 -0.720 -0.132 0.934 sum -5.165 21.214 5.524 22.522 Atomic orbital electron populations 1.22531 0.86233 1.01566 1.01985 1.62909 1.09169 1.15418 1.40035 1.22903 0.98844 0.87611 0.99210 1.22778 1.00519 0.95434 0.98012 1.22704 0.94353 0.95191 1.03238 1.22541 0.99634 0.89581 0.93253 0.87638 1.21266 0.75874 0.88431 0.84909 1.90679 1.51173 1.81740 1.22157 1.45851 1.72217 1.07840 1.10284 1.21608 0.98225 0.80576 0.99035 1.21337 0.96412 0.85007 0.93034 0.92774 1.22585 0.94104 0.97489 1.00732 1.22875 1.00043 0.95677 0.98565 1.21268 0.87120 0.93277 0.93522 1.44754 1.12198 1.01473 1.75257 1.19270 0.87633 0.98083 1.32135 0.90586 1.25681 1.00867 0.97714 1.01012 1.70133 1.30676 1.07265 1.51308 0.85263 0.79598 0.76683 0.78488 1.19700 1.21863 1.21029 0.92970 0.90457 0.93377 0.91462 0.90430 0.89197 0.88785 0.87278 0.92545 0.74824 0.95361 0.95179 0.92007 0.87450 0.89978 0.90909 0.99300 0.94537 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.13 127.69 1.17 1.64 16 2 N -0.55 -12.80 4.69 -891.01 -4.18 -16.98 16 3 C 0.04 0.67 6.90 86.65 0.60 1.27 16 4 C -0.13 -1.54 6.94 31.78 0.22 -1.32 16 5 C -0.12 -1.96 6.48 31.98 0.21 -1.75 16 6 C 0.06 1.32 2.84 44.64 0.13 1.45 16 7 H 0.11 1.60 7.77 -2.39 -0.02 1.58 16 8 C 0.51 16.33 7.11 87.66 0.62 16.95 16 9 O -0.58 -25.70 16.58 -3.04 -0.05 -25.75 16 10 N -0.71 -20.63 5.34 -463.04 -2.47 -23.10 16 11 C 0.13 5.30 5.09 86.38 0.44 5.74 16 12 C 0.15 5.75 3.20 45.34 0.15 5.89 16 13 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 14 C -0.11 -3.36 6.16 31.78 0.20 -3.17 16 15 C -0.13 -4.59 7.08 31.99 0.23 -4.37 16 16 C 0.17 8.53 5.41 86.85 0.47 9.00 16 17 N -0.61 -31.18 3.13 -668.29 -2.09 -33.28 16 18 C -0.24 -13.72 9.74 84.03 0.82 -12.90 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.06 -3.43 5.47 84.86 0.46 -2.96 16 21 N -0.95 -57.95 10.58 21.65 0.23 -57.72 16 22 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 26 H 0.05 0.70 8.09 -2.39 -0.02 0.69 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 0.93 7.58 -2.38 -0.02 0.91 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.26 8.05 -2.38 -0.02 1.24 16 35 H 0.41 8.36 8.39 -92.71 -0.78 7.58 16 36 H 0.03 1.32 7.88 -2.39 -0.02 1.31 16 37 H 0.03 1.40 8.04 -2.39 -0.02 1.38 16 38 H 0.06 1.91 7.79 -2.39 -0.02 1.89 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.24 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 42 H -0.01 -0.61 8.06 -2.39 -0.02 -0.63 16 43 H 0.04 2.02 6.93 -2.38 -0.02 2.00 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -78.32 348.90 -0.65 -78.97 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.19 Total: 13.30 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 5.70 Total: 15.47 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -8.51 Total: -131.07 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.32 -0.65 -78.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027792755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.497 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds