Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47447 * 111.00354 * 2 1 4 4 C 1.54308 * 107.23380 * 123.25994 * 3 2 1 5 5 C 1.55141 * 103.02265 * 22.28680 * 4 3 2 6 6 H 1.08998 * 110.98975 * 82.43406 * 5 4 3 7 7 C 1.50696 * 110.99359 * 206.21888 * 5 4 3 8 8 O 1.21283 * 119.99671 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99854 * 180.02562 * 7 5 4 10 10 C 1.46508 * 119.99751 * 180.02562 * 9 7 5 11 11 C 1.52995 * 109.46939 * 174.97586 * 10 9 7 12 12 H 1.08999 * 109.87339 * 55.55984 * 11 10 9 13 13 C 1.54324 * 109.88177 * 294.54303 * 11 10 9 14 14 C 1.55157 * 102.94025 * 218.39120 * 13 11 10 15 15 C 1.54907 * 101.58354 * 35.50325 * 14 13 11 16 16 N 1.47020 * 109.88319 * 176.73727 * 11 10 9 17 17 C 1.36937 * 125.64483 * 298.31105 * 16 11 10 18 18 H 1.07994 * 120.00495 * 345.74112 * 17 16 11 19 19 C 1.38820 * 120.00039 * 165.74311 * 17 16 11 20 20 N 1.31622 * 119.99634 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47595 * 89.99667 * 21 19 17 23 23 H 1.48506 * 109.46542 * 209.99697 * 21 19 17 24 24 H 1.48500 * 109.46919 * 329.99119 * 21 19 17 25 25 C 1.47843 * 111.00554 * 120.84542 * 2 1 3 26 26 H 1.09001 * 109.47317 * 59.87212 * 1 2 3 27 27 H 1.09000 * 109.47084 * 299.86920 * 1 2 3 28 28 H 1.08997 * 109.47316 * 179.87666 * 1 2 3 29 29 H 1.09000 * 109.88991 * 242.66858 * 3 2 1 30 30 H 1.09002 * 109.88546 * 3.68931 * 3 2 1 31 31 H 1.09007 * 110.70585 * 140.66817 * 4 3 2 32 32 H 1.09004 * 110.70890 * 263.72539 * 4 3 2 33 33 H 0.96997 * 120.00283 * 359.97438 * 9 7 5 34 34 H 1.08998 * 109.46714 * 294.97249 * 10 9 7 35 35 H 1.08996 * 109.47379 * 54.97481 * 10 9 7 36 36 H 1.08997 * 110.72084 * 336.75542 * 13 11 10 37 37 H 1.09004 * 110.72326 * 100.03128 * 13 11 10 38 38 H 1.09007 * 111.00691 * 153.57971 * 14 13 11 39 39 H 1.09003 * 111.00699 * 277.38859 * 14 13 11 40 40 H 1.08996 * 110.36663 * 81.83078 * 15 14 13 41 41 H 1.09005 * 110.36643 * 204.15105 * 15 14 13 42 42 H 0.97002 * 119.99408 * 180.02562 * 20 19 17 43 43 H 1.08993 * 110.37183 * 332.46622 * 25 2 1 44 44 H 1.09005 * 110.37304 * 94.80349 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3048 0.0443 1.5437 6 1 4.1302 -0.2833 0.9117 7 6 3.6441 -0.1269 3.0019 8 8 3.5898 0.8239 3.7529 9 7 4.0089 -1.3365 3.4713 10 6 4.3382 -1.5031 4.8891 11 6 4.5946 -2.9826 5.1827 12 1 5.3723 -3.3625 4.5202 13 6 3.2947 -3.7901 4.9832 14 6 3.3491 -4.8267 6.1364 15 6 4.0079 -3.9988 7.2679 16 7 5.0020 -3.1508 6.5852 17 6 6.1202 -2.6102 7.1618 18 1 6.9034 -2.2004 6.5412 19 6 6.2473 -2.5887 8.5440 20 7 5.2926 -3.0877 9.3003 21 14 7.7724 -1.8505 9.3304 22 1 7.5510 -0.4030 9.5769 23 1 8.0458 -2.5360 10.6191 24 1 8.9328 -2.0260 8.4205 25 6 1.9989 -0.7077 1.1850 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 0.5118 0.8912 28 1 -0.3634 -1.0276 -0.0022 29 1 2.5697 1.5540 -0.9106 30 1 1.1754 2.0893 0.0660 31 1 3.8001 2.1033 0.9904 32 1 2.3754 1.9574 2.0685 33 1 4.0527 -2.0968 2.8707 34 1 5.2323 -0.9258 5.1247 35 1 3.5067 -1.1504 5.4992 36 1 2.4212 -3.1461 5.0844 37 1 3.2961 -4.2904 4.0147 38 1 2.3471 -5.1484 6.4203 39 1 3.9691 -5.6811 5.8649 40 1 3.2628 -3.3813 7.7693 41 1 4.4992 -4.6581 7.9836 42 1 5.3812 -3.0724 10.2662 43 1 1.2891 -0.6503 2.0101 44 1 2.2148 -1.7478 0.9407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028313885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -11.967338 kcal Electronic energy + Delta-G solvation = -22654.087188 eV Core-core repulsion = 19413.619698 eV Total energy + Delta-G solvation = -3240.467490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14278 -38.37310 -37.47766 -34.26736 -32.53347 -32.33135 -29.95535 -29.36232 -28.37439 -26.11829 -24.89818 -23.96657 -22.16123 -21.07507 -20.33329 -19.94538 -19.33791 -17.42017 -16.66144 -16.32511 -15.79606 -15.19970 -14.91532 -14.69957 -14.19034 -14.11626 -13.80089 -13.66745 -13.49710 -13.08524 -12.84756 -12.12473 -11.94975 -11.90572 -11.83444 -11.71177 -11.53671 -11.36767 -11.29042 -10.94770 -10.90937 -10.80781 -10.25872 -10.11886 -9.96680 -9.86118 -9.74236 -9.58208 -8.69746 -8.61882 -8.58245 -6.85745 -5.78170 -3.14811 2.80850 3.33914 3.40218 3.45306 3.46038 3.82638 4.30100 4.45723 4.47645 4.77824 5.00739 5.09003 5.14716 5.18940 5.25989 5.32321 5.38825 5.41821 5.49568 5.59019 5.60985 5.62972 5.67893 5.79434 5.85493 6.04500 6.04689 6.12264 6.22599 6.44154 6.52741 6.60792 6.61230 6.69340 6.72428 6.80332 7.04531 7.50185 7.59120 7.77488 7.78066 8.24032 8.47006 9.15968 9.76573 10.43702 11.33774 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.003817 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.901393 B = 7334.722188 C = 8158.906326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.534 5.534 3 C 0.039 3.961 4 C -0.123 4.123 5 C -0.121 4.121 6 H 0.108 0.892 7 C 0.516 3.484 8 O -0.542 6.542 9 N -0.720 5.720 10 C 0.108 3.892 11 C 0.152 3.848 12 H 0.037 0.963 13 C -0.126 4.126 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.001 4.001 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.054 3.946 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.254 0.746 43 H 0.053 0.947 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 2.288 -18.066 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.088 4.088 4 C -0.161 4.161 5 C -0.143 4.143 6 H 0.126 0.874 7 C 0.300 3.700 8 O -0.419 6.419 9 N -0.371 5.371 10 C -0.017 4.017 11 C 0.044 3.956 12 H 0.055 0.945 13 C -0.164 4.164 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.313 5.313 17 C -0.363 4.363 18 H 0.093 0.907 19 C -0.199 4.199 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.074 4.074 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.836 2.723 -17.696 19.544 hybrid contribution 0.493 0.534 0.950 1.196 sum -7.342 3.257 -16.746 18.573 Atomic orbital electron populations 1.22559 0.87468 1.02254 1.00737 1.63607 1.08177 1.14424 1.39556 1.22896 0.98085 0.89258 0.98582 1.22650 1.00371 0.94999 0.98121 1.22478 0.99544 0.98018 0.94244 0.87387 1.20278 0.77159 0.83184 0.89374 1.90709 1.52691 1.39582 1.58887 1.46161 1.68654 1.10304 1.11992 1.22243 1.00964 0.99935 0.78534 1.21124 0.94090 0.91055 0.89379 0.94505 1.22601 0.97618 0.97956 0.98181 1.23009 0.99945 0.97885 0.97905 1.21459 0.90545 0.91681 0.91581 1.44485 1.25188 1.57045 1.04630 1.18985 0.94242 1.33444 0.89612 0.90653 1.24914 0.98204 1.00576 0.96159 1.69940 1.32715 1.49493 1.03997 0.86143 0.82100 0.78929 0.78741 1.21390 1.21626 1.20559 1.22999 0.94219 0.98655 0.91544 0.91271 0.95278 0.91222 0.90247 0.92428 0.90216 0.89943 0.77077 0.91548 0.91712 0.91911 0.92370 0.92362 0.92281 0.95668 0.90884 0.93593 0.92856 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.06 0.55 0.70 16 2 N -0.53 -5.14 5.44 -239.53 -1.30 -6.44 16 3 C 0.04 0.36 6.90 -2.84 -0.02 0.34 16 4 C -0.12 -1.33 6.06 -24.91 -0.15 -1.48 16 5 C -0.12 -1.34 3.43 -89.64 -0.31 -1.65 16 6 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 7 C 0.52 7.86 7.15 -10.99 -0.08 7.78 16 8 O -0.54 -10.74 15.71 5.56 0.09 -10.65 16 9 N -0.72 -10.55 5.34 -60.29 -0.32 -10.87 16 10 C 0.11 2.08 5.08 -4.04 -0.02 2.06 16 11 C 0.15 2.96 3.21 -66.96 -0.21 2.75 16 12 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 13 C -0.13 -2.05 6.14 -24.90 -0.15 -2.21 16 14 C -0.15 -2.70 7.08 -24.58 -0.17 -2.87 16 15 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 16 N -0.59 -14.57 3.13 -162.58 -0.51 -15.08 16 17 C -0.23 -6.42 9.75 -15.06 -0.15 -6.57 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 20 N -0.92 -26.63 10.56 55.49 0.59 -26.05 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.05 0.54 6.18 -2.30 -0.01 0.52 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.25 8.10 -51.93 -0.42 -0.17 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.48 7.58 -51.93 -0.39 0.09 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.06 7.40 -51.93 -0.38 0.67 16 33 H 0.40 4.54 8.36 -40.82 -0.34 4.20 16 34 H 0.07 1.46 7.90 -51.93 -0.41 1.05 16 35 H 0.06 1.40 8.06 -51.93 -0.42 0.98 16 36 H 0.06 1.02 7.80 -51.93 -0.40 0.62 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.65 8.07 -51.93 -0.42 0.24 16 41 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 43 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -31.80 347.44 -9.81 -41.61 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.72 Total: 1.83 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.84 Total: 3.32 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -1.55 Total: -58.44 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.80 -9.81 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028313885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.647 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds