Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47447 * 111.00354 * 2 1 4 4 C 1.54308 * 107.23380 * 123.25994 * 3 2 1 5 5 C 1.55141 * 103.02265 * 22.28680 * 4 3 2 6 6 H 1.08998 * 110.98975 * 82.43406 * 5 4 3 7 7 C 1.50696 * 110.99359 * 206.21888 * 5 4 3 8 8 O 1.21283 * 119.99671 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99854 * 180.02562 * 7 5 4 10 10 C 1.46508 * 119.99751 * 180.02562 * 9 7 5 11 11 C 1.52995 * 109.46939 * 174.97586 * 10 9 7 12 12 H 1.08999 * 109.87339 * 55.55984 * 11 10 9 13 13 C 1.54324 * 109.88177 * 294.54303 * 11 10 9 14 14 C 1.55157 * 102.94025 * 218.39120 * 13 11 10 15 15 C 1.54907 * 101.58354 * 35.50325 * 14 13 11 16 16 N 1.47020 * 109.88319 * 176.73727 * 11 10 9 17 17 C 1.36937 * 125.64483 * 298.31105 * 16 11 10 18 18 H 1.07994 * 120.00495 * 345.74112 * 17 16 11 19 19 C 1.38820 * 120.00039 * 165.74311 * 17 16 11 20 20 N 1.31622 * 119.99634 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47595 * 89.99667 * 21 19 17 23 23 H 1.48506 * 109.46542 * 209.99697 * 21 19 17 24 24 H 1.48500 * 109.46919 * 329.99119 * 21 19 17 25 25 C 1.47843 * 111.00554 * 120.84542 * 2 1 3 26 26 H 1.09001 * 109.47317 * 59.87212 * 1 2 3 27 27 H 1.09000 * 109.47084 * 299.86920 * 1 2 3 28 28 H 1.08997 * 109.47316 * 179.87666 * 1 2 3 29 29 H 1.09000 * 109.88991 * 242.66858 * 3 2 1 30 30 H 1.09002 * 109.88546 * 3.68931 * 3 2 1 31 31 H 1.09007 * 110.70585 * 140.66817 * 4 3 2 32 32 H 1.09004 * 110.70890 * 263.72539 * 4 3 2 33 33 H 0.96997 * 120.00283 * 359.97438 * 9 7 5 34 34 H 1.08998 * 109.46714 * 294.97249 * 10 9 7 35 35 H 1.08996 * 109.47379 * 54.97481 * 10 9 7 36 36 H 1.08997 * 110.72084 * 336.75542 * 13 11 10 37 37 H 1.09004 * 110.72326 * 100.03128 * 13 11 10 38 38 H 1.09007 * 111.00691 * 153.57971 * 14 13 11 39 39 H 1.09003 * 111.00699 * 277.38859 * 14 13 11 40 40 H 1.08996 * 110.36663 * 81.83078 * 15 14 13 41 41 H 1.09005 * 110.36643 * 204.15105 * 15 14 13 42 42 H 0.97002 * 119.99408 * 180.02562 * 20 19 17 43 43 H 1.08993 * 110.37183 * 332.46622 * 25 2 1 44 44 H 1.09005 * 110.37304 * 94.80349 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3048 0.0443 1.5437 6 1 4.1302 -0.2833 0.9117 7 6 3.6441 -0.1269 3.0019 8 8 3.5898 0.8239 3.7529 9 7 4.0089 -1.3365 3.4713 10 6 4.3382 -1.5031 4.8891 11 6 4.5946 -2.9826 5.1827 12 1 5.3723 -3.3625 4.5202 13 6 3.2947 -3.7901 4.9832 14 6 3.3491 -4.8267 6.1364 15 6 4.0079 -3.9988 7.2679 16 7 5.0020 -3.1508 6.5852 17 6 6.1202 -2.6102 7.1618 18 1 6.9034 -2.2004 6.5412 19 6 6.2473 -2.5887 8.5440 20 7 5.2926 -3.0877 9.3003 21 14 7.7724 -1.8505 9.3304 22 1 7.5510 -0.4030 9.5769 23 1 8.0458 -2.5360 10.6191 24 1 8.9328 -2.0260 8.4205 25 6 1.9989 -0.7077 1.1850 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 0.5118 0.8912 28 1 -0.3634 -1.0276 -0.0022 29 1 2.5697 1.5540 -0.9106 30 1 1.1754 2.0893 0.0660 31 1 3.8001 2.1033 0.9904 32 1 2.3754 1.9574 2.0685 33 1 4.0527 -2.0968 2.8707 34 1 5.2323 -0.9258 5.1247 35 1 3.5067 -1.1504 5.4992 36 1 2.4212 -3.1461 5.0844 37 1 3.2961 -4.2904 4.0147 38 1 2.3471 -5.1484 6.4203 39 1 3.9691 -5.6811 5.8649 40 1 3.2628 -3.3813 7.7693 41 1 4.4992 -4.6581 7.9836 42 1 5.3812 -3.0724 10.2662 43 1 1.2891 -0.6503 2.0101 44 1 2.2148 -1.7478 0.9407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028313885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -35.273634 kcal Electronic energy + Delta-G solvation = -22655.097825 eV Core-core repulsion = 19413.619698 eV Total energy + Delta-G solvation = -3241.478127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27931 -39.61604 -38.87251 -35.78335 -34.42135 -33.22699 -31.48528 -30.77300 -29.65838 -27.00294 -26.61901 -25.56167 -23.25552 -22.01726 -21.82253 -21.33527 -20.79718 -18.89622 -18.20561 -17.39838 -17.15969 -16.62597 -16.29576 -16.07667 -15.70667 -15.38496 -15.08074 -14.62821 -14.46067 -14.37091 -13.99176 -13.87155 -13.66726 -13.42491 -13.00459 -12.87005 -12.70816 -12.63303 -12.53043 -12.30084 -12.21802 -12.02028 -11.87143 -11.72772 -11.71008 -11.49307 -11.40567 -10.95558 -10.70210 -10.09363 -9.35708 -8.87617 -7.90141 -5.27663 1.42724 1.45373 1.52927 1.58006 2.12833 2.48377 3.03624 3.29727 3.42388 3.65204 3.70309 3.88616 3.97349 3.98586 4.23001 4.25488 4.29040 4.37098 4.45120 4.50435 4.53377 4.54669 4.70511 4.72518 4.87685 4.90671 4.96773 4.99614 5.01568 5.06242 5.14260 5.20791 5.23352 5.37116 5.45899 5.57116 5.65563 5.76836 5.88501 6.02623 6.21662 6.58226 7.07498 7.26576 7.74907 8.40512 9.20735 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.003817 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.901393 B = 7334.722188 C = 8158.906326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.537 5.537 3 C 0.044 3.956 4 C -0.125 4.125 5 C -0.110 4.110 6 H 0.135 0.865 7 C 0.514 3.486 8 O -0.593 6.593 9 N -0.703 5.703 10 C 0.129 3.871 11 C 0.148 3.852 12 H 0.054 0.946 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.173 3.827 16 N -0.612 5.612 17 C -0.240 4.240 18 H 0.077 0.923 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.972 3.028 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.266 1.266 25 C 0.057 3.943 26 H 0.081 0.919 27 H 0.020 0.980 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.417 0.583 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.071 0.929 40 H -0.011 1.011 41 H 0.036 0.964 42 H 0.248 0.752 43 H 0.038 0.962 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 1.317 -21.466 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.084 4.084 4 C -0.164 4.164 5 C -0.132 4.132 6 H 0.153 0.847 7 C 0.301 3.699 8 O -0.474 6.474 9 N -0.355 5.355 10 C 0.002 3.998 11 C 0.041 3.959 12 H 0.072 0.928 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.048 3.952 16 N -0.337 5.337 17 C -0.370 4.370 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.800 3.200 22 H -0.219 1.219 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.071 4.071 26 H 0.100 0.900 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.254 0.746 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.007 0.993 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.099 1.723 -21.172 22.734 hybrid contribution 0.550 0.877 1.960 2.217 sum -7.549 2.600 -19.212 20.805 Atomic orbital electron populations 1.22629 0.86641 1.02955 1.00979 1.63703 1.09012 1.14461 1.38892 1.22913 0.98026 0.89370 0.98051 1.22651 1.00805 0.94850 0.98101 1.22481 1.01173 0.98626 0.90926 0.84705 1.21064 0.75667 0.82229 0.90915 1.90695 1.54721 1.41302 1.60670 1.45868 1.68126 1.11287 1.10253 1.21666 0.98084 0.99199 0.80830 1.21349 0.96361 0.91426 0.86791 0.92841 1.22595 0.95496 0.96972 0.99855 1.22874 1.00756 0.97663 0.95899 1.21273 0.89592 0.91233 0.93111 1.44763 1.24768 1.57355 1.06774 1.19310 0.95291 1.32374 0.89988 0.90531 1.25690 1.01093 1.01736 0.96883 1.70145 1.34495 1.51115 1.03616 0.85185 0.79458 0.77535 0.77835 1.21875 1.21754 1.19096 1.23035 0.92962 0.99699 0.91367 0.89981 0.96103 0.90360 0.88697 0.91905 0.89612 0.92695 0.74568 0.95043 0.94916 0.91862 0.87404 0.89971 0.90982 0.99270 0.94512 0.94322 0.94348 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 127.69 1.16 1.39 16 2 N -0.54 -8.68 5.44 -911.74 -4.96 -13.64 16 3 C 0.04 0.69 6.90 86.64 0.60 1.28 16 4 C -0.13 -2.55 6.06 31.77 0.19 -2.35 16 5 C -0.11 -2.19 3.43 -10.16 -0.03 -2.22 16 6 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.51 15.23 7.15 87.66 0.63 15.86 16 8 O -0.59 -24.13 15.71 -3.04 -0.05 -24.18 16 9 N -0.70 -19.42 5.34 -463.06 -2.47 -21.90 16 10 C 0.13 4.97 5.08 86.38 0.44 5.41 16 11 C 0.15 5.57 3.21 45.34 0.15 5.72 16 12 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 13 C -0.11 -3.27 6.14 31.78 0.20 -3.08 16 14 C -0.13 -4.54 7.08 31.99 0.23 -4.31 16 15 C 0.17 8.41 5.42 86.86 0.47 8.88 16 16 N -0.61 -30.74 3.13 -668.29 -2.09 -32.83 16 17 C -0.24 -13.47 9.75 84.04 0.82 -12.65 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 19 C -0.06 -3.47 5.47 84.86 0.46 -3.01 16 20 N -0.95 -57.44 10.56 21.65 0.23 -57.21 16 21 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.06 0.98 6.18 86.77 0.54 1.51 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.02 0.32 8.10 -2.39 -0.02 0.30 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.92 7.58 -2.39 -0.02 0.90 16 31 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.05 1.43 7.40 -2.38 -0.02 1.41 16 33 H 0.42 8.03 8.36 -92.71 -0.78 7.25 16 34 H 0.03 1.42 7.90 -2.39 -0.02 1.40 16 35 H 0.03 1.46 8.06 -2.39 -0.02 1.44 16 36 H 0.06 1.88 7.80 -2.39 -0.02 1.87 16 37 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H -0.01 -0.59 8.07 -2.39 -0.02 -0.61 16 41 H 0.04 2.02 6.90 -2.38 -0.02 2.00 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.04 0.77 7.67 -2.39 -0.02 0.76 16 44 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -73.82 347.44 -1.28 -75.10 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.19 Total: 13.55 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 5.84 Total: 12.43 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -9.30 Total: -125.58 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -73.82 -1.28 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028313885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.826 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds