Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47849 * 111.00339 * 2 1 4 4 C 1.54906 * 104.79803 * 146.36092 * 3 2 1 5 5 C 1.55139 * 101.65297 * 322.93226 * 4 3 2 6 6 H 1.09004 * 110.85279 * 277.19519 * 5 4 3 7 7 C 1.50702 * 110.70625 * 154.03668 * 5 4 3 8 8 O 1.21281 * 119.99814 * 4.94416 * 7 5 4 9 9 N 1.34776 * 120.00257 * 184.94437 * 7 5 4 10 10 C 1.46498 * 119.99862 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46698 * 184.92961 * 10 9 7 12 12 H 1.09000 * 109.99788 * 304.36778 * 11 10 9 13 13 C 1.54320 * 109.88629 * 65.46753 * 11 10 9 14 14 C 1.55158 * 102.94196 * 141.60862 * 13 11 10 15 15 C 1.54907 * 101.58106 * 324.49855 * 14 13 11 16 16 N 1.47021 * 109.87949 * 183.27944 * 11 10 9 17 17 C 1.36938 * 125.65149 * 61.67687 * 16 11 10 18 18 H 1.07995 * 120.00039 * 14.66200 * 17 16 11 19 19 C 1.38818 * 119.99729 * 194.67101 * 17 16 11 20 20 N 1.31621 * 120.00190 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46816 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46994 * 119.99532 * 21 19 17 24 24 H 1.48497 * 109.47272 * 239.99943 * 21 19 17 25 25 C 1.47445 * 110.99913 * 120.83843 * 2 1 3 26 26 H 1.09004 * 109.46759 * 299.15785 * 1 2 3 27 27 H 1.08992 * 109.46922 * 59.16068 * 1 2 3 28 28 H 1.08997 * 109.46976 * 179.16152 * 1 2 3 29 29 H 1.09002 * 110.37199 * 265.19646 * 3 2 1 30 30 H 1.08999 * 110.37104 * 27.53112 * 3 2 1 31 31 H 1.08995 * 110.98709 * 204.83802 * 4 3 2 32 32 H 1.09002 * 110.98854 * 81.02179 * 4 3 2 33 33 H 0.97003 * 119.99663 * 359.97438 * 9 7 5 34 34 H 1.08995 * 109.47428 * 64.92995 * 10 9 7 35 35 H 1.08997 * 109.46829 * 304.92630 * 10 9 7 36 36 H 1.09005 * 110.71824 * 23.24631 * 13 11 10 37 37 H 1.09003 * 110.71915 * 259.97863 * 13 11 10 38 38 H 1.09001 * 111.00251 * 82.57774 * 14 13 11 39 39 H 1.09004 * 111.00203 * 206.38580 * 14 13 11 40 40 H 1.08998 * 110.36401 * 155.84671 * 15 14 13 41 41 H 1.08996 * 110.36669 * 278.16673 * 15 14 13 42 42 H 0.96994 * 119.99529 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.88911 * 117.33868 * 25 2 1 44 44 H 1.08999 * 110.02285 * 356.22893 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9158 0.2822 1.9315 6 1 2.3753 0.7725 2.7412 7 6 4.1383 -0.4231 2.4600 8 8 5.2413 -0.0918 2.0799 9 7 4.0058 -1.4219 3.3551 10 6 5.1943 -2.1071 3.8693 11 6 4.7645 -3.2694 4.7666 12 1 4.1117 -2.9061 5.5603 13 6 4.0281 -4.3354 3.9281 14 6 4.5296 -5.6687 4.5431 15 6 5.9965 -5.3165 4.8950 16 7 5.9494 -3.9151 5.3502 17 6 6.8584 -3.3145 6.1799 18 1 6.6219 -2.3695 6.6461 19 6 8.0838 -3.9203 6.4214 20 7 8.3719 -5.0722 5.8534 21 14 9.3240 -3.1007 7.5525 22 1 8.7623 -1.8230 8.0599 23 1 9.6209 -4.0002 8.6962 24 1 10.5748 -2.8269 6.8003 25 6 1.9974 -0.7056 1.1819 26 1 -0.3633 0.5007 0.8975 27 1 -0.3633 0.5268 -0.8823 28 1 -0.3633 -1.0275 -0.0150 29 1 2.2148 1.7038 -1.0183 30 1 1.2890 2.0592 0.4723 31 1 3.5495 2.2720 1.2640 32 1 4.1302 0.9281 0.2243 33 1 3.1236 -1.6866 3.6594 34 1 5.7967 -1.4058 4.4467 35 1 5.7822 -2.4900 3.0352 36 1 4.3122 -4.2640 2.8782 37 1 2.9486 -4.2390 4.0440 38 1 3.9631 -5.9232 5.4389 39 1 4.4855 -6.4767 3.8129 40 1 6.3606 -5.9628 5.6937 41 1 6.6305 -5.4079 4.0132 42 1 9.2280 -5.4956 6.0225 43 1 2.5697 -1.5784 0.8676 44 1 1.1771 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028313886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -11.379394 kcal Electronic energy + Delta-G solvation = -22664.470999 eV Core-core repulsion = 19424.029004 eV Total energy + Delta-G solvation = -3240.441995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15376 -38.36018 -37.46888 -34.25829 -32.52848 -32.33435 -29.98448 -29.36209 -28.33424 -26.11837 -24.88477 -23.93689 -22.07634 -21.22214 -20.32242 -19.92329 -19.34581 -17.41871 -16.66393 -16.32488 -15.82307 -15.23018 -14.85677 -14.68795 -14.25411 -14.12541 -13.82815 -13.65360 -13.39233 -13.13314 -12.53275 -12.11930 -12.06662 -11.91056 -11.89809 -11.77508 -11.47401 -11.36723 -11.28725 -11.00206 -10.93951 -10.81129 -10.24461 -10.09267 -9.94495 -9.84980 -9.73850 -9.52662 -8.67774 -8.62532 -8.57598 -6.84772 -5.77833 -3.14524 2.84365 3.37311 3.42176 3.46089 3.47594 3.73625 4.27365 4.44934 4.50658 4.74519 5.02836 5.04129 5.11812 5.14578 5.23626 5.32987 5.33949 5.39951 5.50478 5.56406 5.61468 5.62770 5.75610 5.80214 5.82314 6.05426 6.09792 6.13693 6.23731 6.45037 6.54448 6.61621 6.62555 6.70613 6.74657 6.81471 7.05636 7.50771 7.60421 7.78255 7.79143 8.24544 8.48940 9.16476 9.77036 10.44372 11.34256 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.003822 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.942887 B = 7323.902159 C = 8160.723888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.040 3.960 4 C -0.108 4.108 5 C -0.134 4.134 6 H 0.099 0.901 7 C 0.518 3.482 8 O -0.539 6.539 9 N -0.722 5.722 10 C 0.109 3.891 11 C 0.152 3.848 12 H 0.036 0.964 13 C -0.126 4.126 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.234 4.234 18 H 0.076 0.924 19 C -0.001 4.001 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.053 3.947 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.085 0.915 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.059 7.967 -8.620 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.156 4.156 6 H 0.117 0.883 7 C 0.302 3.698 8 O -0.416 6.416 9 N -0.373 5.373 10 C -0.016 4.016 11 C 0.043 3.957 12 H 0.054 0.946 13 C -0.164 4.164 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.314 5.314 17 C -0.362 4.362 18 H 0.094 0.906 19 C -0.199 4.199 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.076 4.076 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.856 7.861 -9.235 19.962 hybrid contribution -0.003 0.715 1.476 1.640 sum -15.859 8.576 -7.759 19.628 Atomic orbital electron populations 1.22563 0.87549 1.02226 1.00621 1.63580 1.07973 1.14636 1.39554 1.23124 0.95589 0.89152 1.00898 1.22591 0.97864 0.98562 0.95647 1.22603 0.95821 0.97802 0.99395 0.88277 1.20224 0.90246 0.80161 0.79145 1.90712 1.27342 1.64853 1.58644 1.46158 1.10903 1.35920 1.44284 1.22234 0.86323 0.95083 0.97989 1.21126 0.90694 0.91227 0.92604 0.94604 1.22603 0.98261 0.96301 0.99194 1.23007 1.00512 0.95831 0.99391 1.21453 0.89448 0.85733 0.98622 1.44497 1.26100 1.07136 1.53638 1.19025 0.93555 1.04608 1.19047 0.90629 1.24923 0.97119 0.97606 1.00212 1.69947 1.22869 1.16881 1.46368 0.86073 0.81476 0.78611 0.79773 1.20385 1.21698 1.21572 1.22815 0.97345 0.97092 0.90314 0.95426 0.91323 0.91211 0.89829 0.93448 0.90324 0.89108 0.77251 0.91580 0.91603 0.91793 0.92453 0.92335 0.92326 0.90976 0.95580 0.93634 0.89720 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.06 0.55 0.69 16 2 N -0.53 -5.24 5.44 -239.52 -1.30 -6.55 16 3 C 0.04 0.36 6.73 -2.30 -0.02 0.34 16 4 C -0.11 -1.18 6.13 -24.59 -0.15 -1.33 16 5 C -0.13 -1.47 3.34 -89.95 -0.30 -1.77 16 6 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.52 7.94 7.02 -10.98 -0.08 7.86 16 8 O -0.54 -10.76 15.76 5.56 0.09 -10.67 16 9 N -0.72 -10.61 5.28 -60.30 -0.32 -10.93 16 10 C 0.11 2.09 5.08 -4.04 -0.02 2.07 16 11 C 0.15 2.97 3.21 -66.95 -0.21 2.75 16 12 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 13 C -0.13 -2.06 6.14 -24.90 -0.15 -2.22 16 14 C -0.15 -2.70 7.08 -24.58 -0.17 -2.88 16 15 C 0.17 4.10 5.41 -2.53 -0.01 4.09 16 16 N -0.59 -14.60 3.13 -162.58 -0.51 -15.11 16 17 C -0.23 -6.41 9.75 -15.06 -0.15 -6.56 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 20 N -0.91 -26.66 10.58 55.49 0.59 -26.07 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.05 0.52 6.42 -2.84 -0.02 0.50 16 26 H 0.03 0.19 8.10 -51.93 -0.42 -0.23 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.37 7.78 -51.93 -0.40 -0.04 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.19 7.49 -51.93 -0.39 0.81 16 33 H 0.39 4.54 8.35 -40.82 -0.34 4.20 16 34 H 0.07 1.45 7.90 -51.93 -0.41 1.04 16 35 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 36 H 0.06 1.05 7.80 -51.93 -0.40 0.65 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 41 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 44 H 0.06 0.50 7.59 -51.93 -0.39 0.11 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -32.00 347.25 -9.80 -41.80 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.72 Total: 1.76 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.83 Total: 3.42 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -1.54 Total: -58.66 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.00 -9.80 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028313886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.418 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds