Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47849 * 111.00339 * 2 1 4 4 C 1.54906 * 104.79803 * 146.36092 * 3 2 1 5 5 C 1.55139 * 101.65297 * 322.93226 * 4 3 2 6 6 H 1.09004 * 110.85279 * 277.19519 * 5 4 3 7 7 C 1.50702 * 110.70625 * 154.03668 * 5 4 3 8 8 O 1.21281 * 119.99814 * 4.94416 * 7 5 4 9 9 N 1.34776 * 120.00257 * 184.94437 * 7 5 4 10 10 C 1.46498 * 119.99862 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46698 * 184.92961 * 10 9 7 12 12 H 1.09000 * 109.99788 * 304.36778 * 11 10 9 13 13 C 1.54320 * 109.88629 * 65.46753 * 11 10 9 14 14 C 1.55158 * 102.94196 * 141.60862 * 13 11 10 15 15 C 1.54907 * 101.58106 * 324.49855 * 14 13 11 16 16 N 1.47021 * 109.87949 * 183.27944 * 11 10 9 17 17 C 1.36938 * 125.65149 * 61.67687 * 16 11 10 18 18 H 1.07995 * 120.00039 * 14.66200 * 17 16 11 19 19 C 1.38818 * 119.99729 * 194.67101 * 17 16 11 20 20 N 1.31621 * 120.00190 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46816 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46994 * 119.99532 * 21 19 17 24 24 H 1.48497 * 109.47272 * 239.99943 * 21 19 17 25 25 C 1.47445 * 110.99913 * 120.83843 * 2 1 3 26 26 H 1.09004 * 109.46759 * 299.15785 * 1 2 3 27 27 H 1.08992 * 109.46922 * 59.16068 * 1 2 3 28 28 H 1.08997 * 109.46976 * 179.16152 * 1 2 3 29 29 H 1.09002 * 110.37199 * 265.19646 * 3 2 1 30 30 H 1.08999 * 110.37104 * 27.53112 * 3 2 1 31 31 H 1.08995 * 110.98709 * 204.83802 * 4 3 2 32 32 H 1.09002 * 110.98854 * 81.02179 * 4 3 2 33 33 H 0.97003 * 119.99663 * 359.97438 * 9 7 5 34 34 H 1.08995 * 109.47428 * 64.92995 * 10 9 7 35 35 H 1.08997 * 109.46829 * 304.92630 * 10 9 7 36 36 H 1.09005 * 110.71824 * 23.24631 * 13 11 10 37 37 H 1.09003 * 110.71915 * 259.97863 * 13 11 10 38 38 H 1.09001 * 111.00251 * 82.57774 * 14 13 11 39 39 H 1.09004 * 111.00203 * 206.38580 * 14 13 11 40 40 H 1.08998 * 110.36401 * 155.84671 * 15 14 13 41 41 H 1.08996 * 110.36669 * 278.16673 * 15 14 13 42 42 H 0.96994 * 119.99529 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.88911 * 117.33868 * 25 2 1 44 44 H 1.08999 * 110.02285 * 356.22893 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9158 0.2822 1.9315 6 1 2.3753 0.7725 2.7412 7 6 4.1383 -0.4231 2.4600 8 8 5.2413 -0.0918 2.0799 9 7 4.0058 -1.4219 3.3551 10 6 5.1943 -2.1071 3.8693 11 6 4.7645 -3.2694 4.7666 12 1 4.1117 -2.9061 5.5603 13 6 4.0281 -4.3354 3.9281 14 6 4.5296 -5.6687 4.5431 15 6 5.9965 -5.3165 4.8950 16 7 5.9494 -3.9151 5.3502 17 6 6.8584 -3.3145 6.1799 18 1 6.6219 -2.3695 6.6461 19 6 8.0838 -3.9203 6.4214 20 7 8.3719 -5.0722 5.8534 21 14 9.3240 -3.1007 7.5525 22 1 8.7623 -1.8230 8.0599 23 1 9.6209 -4.0002 8.6962 24 1 10.5748 -2.8269 6.8003 25 6 1.9974 -0.7056 1.1819 26 1 -0.3633 0.5007 0.8975 27 1 -0.3633 0.5268 -0.8823 28 1 -0.3633 -1.0275 -0.0150 29 1 2.2148 1.7038 -1.0183 30 1 1.2890 2.0592 0.4723 31 1 3.5495 2.2720 1.2640 32 1 4.1302 0.9281 0.2243 33 1 3.1236 -1.6866 3.6594 34 1 5.7967 -1.4058 4.4467 35 1 5.7822 -2.4900 3.0352 36 1 4.3122 -4.2640 2.8782 37 1 2.9486 -4.2390 4.0440 38 1 3.9631 -5.9232 5.4389 39 1 4.4855 -6.4767 3.8129 40 1 6.3606 -5.9628 5.6937 41 1 6.6305 -5.4079 4.0132 42 1 9.2280 -5.4956 6.0225 43 1 2.5697 -1.5784 0.8676 44 1 1.1771 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028313886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -35.005579 kcal Electronic energy + Delta-G solvation = -22665.495507 eV Core-core repulsion = 19424.029004 eV Total energy + Delta-G solvation = -3241.466503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28049 -39.60330 -38.85967 -35.77830 -34.42066 -33.20240 -31.49040 -30.79764 -29.61780 -26.95030 -26.60612 -25.53781 -23.16332 -22.01006 -21.94754 -21.31612 -20.79502 -18.89668 -18.20545 -17.36639 -17.18821 -16.65081 -16.28638 -16.03161 -15.68211 -15.39356 -15.05248 -14.64925 -14.48541 -14.33872 -13.98710 -13.67655 -13.51306 -13.35475 -12.99388 -12.88840 -12.83836 -12.70127 -12.54292 -12.25099 -12.14370 -11.99102 -11.88020 -11.81211 -11.72366 -11.49486 -11.40469 -10.87336 -10.70200 -10.07998 -9.28591 -8.87196 -7.90210 -5.27831 1.42464 1.44854 1.54008 1.61320 2.15572 2.48621 3.04300 3.29777 3.41037 3.60468 3.75528 3.91304 3.96458 3.99446 4.23600 4.29566 4.30579 4.35548 4.45320 4.50708 4.54932 4.58291 4.71314 4.72712 4.86816 4.96193 4.99094 4.99546 5.04576 5.12002 5.14458 5.20465 5.23261 5.37882 5.46014 5.57637 5.65605 5.77011 5.94438 6.12950 6.21778 6.59155 7.07601 7.28162 7.74872 8.40722 9.20978 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.003822 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.942887 B = 7323.902159 C = 8160.723888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.553 5.553 3 C 0.047 3.953 4 C -0.112 4.112 5 C -0.122 4.122 6 H 0.130 0.870 7 C 0.515 3.485 8 O -0.592 6.592 9 N -0.705 5.705 10 C 0.129 3.871 11 C 0.148 3.852 12 H 0.054 0.946 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.173 3.827 16 N -0.612 5.612 17 C -0.239 4.239 18 H 0.077 0.923 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.288 1.288 24 H -0.296 1.296 25 C 0.057 3.943 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.416 0.584 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.036 0.964 41 H -0.010 1.010 42 H 0.247 0.753 43 H 0.065 0.935 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.748 8.957 -8.554 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.278 5.278 3 C -0.080 4.080 4 C -0.151 4.151 5 C -0.144 4.144 6 H 0.148 0.852 7 C 0.302 3.698 8 O -0.472 6.472 9 N -0.357 5.357 10 C 0.003 3.997 11 C 0.041 3.959 12 H 0.071 0.929 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.048 3.952 16 N -0.337 5.337 17 C -0.369 4.369 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.223 1.223 25 C -0.071 4.071 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.253 0.747 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.008 0.992 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.629 8.864 -9.168 23.408 hybrid contribution 1.115 0.447 1.405 1.848 sum -18.514 9.310 -7.764 22.130 Atomic orbital electron populations 1.22621 0.85860 1.02902 1.01578 1.63540 1.09646 1.15011 1.39613 1.23085 0.94682 0.89361 1.00842 1.22582 0.98076 0.98734 0.95705 1.22611 0.93842 0.97766 1.00201 0.85203 1.21074 0.91026 0.79577 0.78125 1.90696 1.29923 1.66334 1.60276 1.45861 1.10438 1.35429 1.43947 1.21655 0.87349 0.94476 0.96266 1.21349 0.89207 0.92012 0.93323 0.92861 1.22595 1.00646 0.93499 0.98194 1.22872 0.96001 0.97551 1.00756 1.21266 0.92943 0.85199 0.95783 1.44776 1.26932 1.08169 1.53800 1.19339 0.94208 1.04336 1.18974 0.90523 1.25701 0.99062 0.98384 1.02293 1.70149 1.22880 1.18208 1.48117 0.85113 0.78835 0.78121 0.77912 1.19086 1.21432 1.22300 1.22770 0.97643 0.96008 0.90686 0.94155 0.90666 0.90722 0.89661 0.91326 0.89625 0.92290 0.74718 0.95045 0.94932 0.91883 0.87448 0.90968 0.89976 0.94578 0.99240 0.94323 0.91702 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.12 127.69 1.16 1.37 16 2 N -0.55 -9.26 5.44 -911.70 -4.96 -14.23 16 3 C 0.05 0.73 6.73 86.77 0.58 1.31 16 4 C -0.11 -2.31 6.13 31.98 0.20 -2.11 16 5 C -0.12 -2.39 3.34 -10.36 -0.03 -2.42 16 6 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 7 C 0.51 15.41 7.02 87.66 0.62 16.03 16 8 O -0.59 -24.37 15.76 -3.03 -0.05 -24.42 16 9 N -0.70 -19.63 5.28 -463.07 -2.45 -22.07 16 10 C 0.13 5.02 5.08 86.38 0.44 5.46 16 11 C 0.15 5.61 3.21 45.34 0.15 5.76 16 12 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.11 -3.31 6.14 31.78 0.20 -3.12 16 14 C -0.13 -4.56 7.08 31.99 0.23 -4.34 16 15 C 0.17 8.46 5.41 86.85 0.47 8.93 16 16 N -0.61 -30.85 3.13 -668.27 -2.09 -32.93 16 17 C -0.24 -13.43 9.75 84.03 0.82 -12.61 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 20 N -0.95 -57.59 10.58 21.65 0.23 -57.36 16 21 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 C 0.06 0.96 6.42 86.64 0.56 1.51 16 26 H 0.04 0.36 8.10 -2.39 -0.02 0.34 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 0.79 7.78 -2.39 -0.02 0.77 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.59 7.49 -2.39 -0.02 1.57 16 33 H 0.42 8.06 8.35 -92.71 -0.77 7.28 16 34 H 0.03 1.43 7.90 -2.39 -0.02 1.41 16 35 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 36 H 0.06 1.91 7.80 -2.38 -0.02 1.90 16 37 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.04 1.99 6.93 -2.39 -0.02 1.97 16 41 H -0.01 -0.58 8.06 -2.39 -0.02 -0.59 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.06 1.35 7.81 -2.38 -0.02 1.33 16 44 H 0.09 1.01 7.59 -2.39 -0.02 1.00 16 Total: -1.00 -74.97 347.25 -1.26 -76.22 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.19 Total: 13.27 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.84 Total: 12.74 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -9.27 Total: -126.59 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.97 -1.26 -76.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028313886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.219 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds