Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47846 * 110.99563 * 2 1 4 4 C 1.54913 * 104.79489 * 146.36281 * 3 2 1 5 5 C 1.55398 * 101.74044 * 323.01319 * 4 3 2 6 6 C 1.47445 * 110.99594 * 120.83587 * 2 1 3 7 7 H 1.09004 * 109.88688 * 117.18149 * 6 2 1 8 8 C 1.50694 * 109.89079 * 356.15713 * 6 2 1 9 9 O 1.21289 * 119.99612 * 307.61013 * 8 6 2 10 10 N 1.34773 * 120.00300 * 127.61745 * 8 6 2 11 11 C 1.46504 * 120.00080 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47078 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.88615 * 57.42395 * 12 11 10 14 14 C 1.55160 * 111.00138 * 181.34851 * 12 11 10 15 15 C 1.54338 * 103.01831 * 153.38028 * 14 12 11 16 16 N 1.47024 * 107.26602 * 338.14296 * 15 14 12 17 17 C 1.36943 * 125.64928 * 178.84981 * 16 15 14 18 18 H 1.07998 * 120.00040 * 179.68924 * 17 16 15 19 19 C 1.38815 * 119.99687 * 359.68979 * 17 16 15 20 20 N 1.31619 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99713 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47208 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.47004 * 299.99778 * 21 19 17 24 24 H 1.48500 * 109.47069 * 59.99992 * 21 19 17 25 25 C 1.47424 * 108.70403 * 358.58325 * 16 15 14 26 26 H 1.08998 * 109.47413 * 308.70814 * 1 2 3 27 27 H 1.09004 * 109.46613 * 68.71179 * 1 2 3 28 28 H 1.09003 * 109.47043 * 188.70527 * 1 2 3 29 29 H 1.08998 * 110.37028 * 265.18608 * 3 2 1 30 30 H 1.08998 * 110.37748 * 27.42126 * 3 2 1 31 31 H 1.08990 * 110.99083 * 81.01567 * 4 3 2 32 32 H 1.09001 * 110.98858 * 204.80002 * 4 3 2 33 33 H 1.08999 * 110.68325 * 277.18019 * 5 4 3 34 34 H 1.08997 * 110.84354 * 153.85904 * 5 4 3 35 35 H 0.96999 * 119.99766 * 359.97438 * 10 8 6 36 36 H 1.08994 * 109.47280 * 59.99517 * 11 10 8 37 37 H 1.09003 * 109.46828 * 299.99435 * 11 10 8 38 38 H 1.09000 * 110.72146 * 271.93482 * 14 12 11 39 39 H 1.08994 * 110.72340 * 35.03873 * 14 12 11 40 40 H 1.08996 * 109.99201 * 218.66493 * 15 14 12 41 41 H 1.09005 * 109.77735 * 97.49530 * 15 14 12 42 42 H 0.96999 * 119.99862 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.36742 * 143.19634 * 25 16 15 44 44 H 1.09003 * 110.36649 * 265.52349 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3047 1.3028 0.8297 5 6 2.9181 0.2791 1.9330 6 6 1.9973 -0.7056 1.1820 7 1 2.5673 -1.5800 0.8678 8 6 0.8610 -1.1291 2.0766 9 8 0.0367 -0.3153 2.4362 10 7 0.7608 -2.4120 2.4773 11 6 -0.3436 -2.8235 3.3475 12 6 -0.2244 -4.3185 3.6503 13 1 0.7371 -4.5463 4.1106 14 6 -1.3978 -4.8001 4.5440 15 6 -1.5201 -6.2952 4.1813 16 7 -0.9056 -6.4749 2.8578 17 6 -0.7891 -7.6628 2.1865 18 1 -0.3237 -7.6891 1.2123 19 6 -1.2693 -8.8330 2.7582 20 7 -1.8361 -8.8009 3.9457 21 14 -1.1111 -10.4533 1.8422 22 1 -1.6974 -11.5443 2.6614 23 1 -1.8343 -10.3631 0.5483 24 1 0.3236 -10.7404 1.5885 25 6 -0.4413 -5.1634 2.3702 26 1 -0.3634 0.6426 0.8019 27 1 -0.3633 0.3731 -0.9576 28 1 -0.3633 -1.0159 0.1555 29 1 2.2147 1.7038 -1.0182 30 1 1.2880 2.0596 0.4706 31 1 4.1301 0.9283 0.2244 32 1 3.5497 2.2723 1.2635 33 1 2.3781 0.7708 2.7422 34 1 3.8017 -0.2333 2.3134 35 1 1.4199 -3.0628 2.1894 36 1 -1.2922 -2.6289 2.8473 37 1 -0.3016 -2.2592 4.2792 38 1 -1.1551 -4.6755 5.5993 39 1 -2.3157 -4.2676 4.2953 40 1 -2.5701 -6.5852 4.1449 41 1 -0.9921 -6.8984 4.9200 42 1 -2.1720 -9.6186 4.3450 43 1 0.4957 -5.2717 1.8239 44 1 -1.1999 -4.7040 1.7365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028447011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -2.302660 kcal Electronic energy + Delta-G solvation = -22611.621720 eV Core-core repulsion = 19371.573322 eV Total energy + Delta-G solvation = -3240.048398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76147 -38.24496 -37.29258 -34.69676 -32.57185 -32.24493 -30.35335 -29.40169 -28.10356 -25.81987 -25.49098 -23.79202 -22.06070 -21.53216 -20.41991 -19.96006 -19.44594 -17.47586 -16.76383 -16.45009 -15.85475 -15.47364 -15.31957 -14.65975 -14.47628 -14.22105 -13.78597 -13.55083 -13.44477 -12.98926 -12.57117 -12.34149 -12.09863 -11.97084 -11.73669 -11.67945 -11.49639 -11.40020 -11.32757 -11.08208 -10.91344 -10.78579 -10.45933 -10.19024 -10.05519 -9.91010 -9.83526 -9.66304 -9.03349 -8.60735 -8.41030 -6.84552 -5.72066 -3.05836 2.47874 3.16960 3.40047 3.44263 3.45581 3.82776 4.25810 4.39975 4.48618 4.63552 4.85466 5.06622 5.09592 5.16712 5.21892 5.31925 5.40217 5.44461 5.48553 5.52685 5.56773 5.61082 5.66412 5.79631 5.86770 5.89734 5.94879 6.03358 6.05427 6.32183 6.43594 6.48436 6.51394 6.62275 6.66764 6.73519 6.89147 7.49802 7.54657 7.61774 7.81404 8.17295 8.25180 9.21194 9.81594 10.47564 11.39627 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.003302 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.327863 B = 8477.527774 C = 8916.565821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.510 5.510 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.128 4.128 6 C 0.051 3.949 7 H 0.102 0.898 8 C 0.501 3.499 9 O -0.545 6.545 10 N -0.719 5.719 11 C 0.132 3.868 12 C -0.118 4.118 13 H 0.079 0.921 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.606 5.606 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.143 3.857 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.253 0.747 43 H 0.036 0.964 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 18.696 -3.629 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.234 5.234 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.167 4.167 6 C -0.060 4.060 7 H 0.120 0.880 8 C 0.286 3.714 9 O -0.423 6.423 10 N -0.370 5.370 11 C 0.008 3.992 12 C -0.138 4.138 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.212 1.212 24 H -0.211 1.211 25 C 0.016 3.984 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.606 18.758 -3.774 20.980 hybrid contribution -0.029 -0.965 0.128 0.974 sum 8.577 17.793 -3.646 20.086 Atomic orbital electron populations 1.22949 0.86785 1.02716 1.01873 1.64045 1.09280 1.14616 1.35484 1.23151 0.95673 0.89478 1.00646 1.22738 0.97770 0.99282 0.96662 1.22786 0.99070 0.96491 0.98354 1.22637 0.94320 0.99338 0.89712 0.87978 1.20988 0.86966 0.82431 0.81011 1.90660 1.43076 1.51732 1.56786 1.46209 1.29951 1.09964 1.50836 1.21406 0.89393 0.94854 0.93534 1.22616 1.00165 0.91886 0.99094 0.90216 1.22860 0.96443 0.99944 0.98126 1.21149 0.98037 0.88345 0.87192 1.44476 1.68923 1.02000 1.17854 1.19018 1.33361 0.83662 0.99838 0.90509 1.24809 1.00760 0.97859 0.97010 1.69954 1.44562 1.26674 1.15790 0.86191 0.77664 0.83191 0.78662 1.21592 1.21161 1.21144 1.21554 0.96655 0.87031 0.93115 0.91734 0.91839 0.91705 0.89868 0.93036 0.90341 0.90480 0.90473 0.89956 0.76212 0.91451 0.91749 0.91994 0.92284 0.93947 0.93496 0.93693 0.94619 0.96403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.19 60.06 0.49 0.55 16 2 N -0.51 -5.73 5.44 -232.94 -1.27 -6.99 16 3 C 0.04 0.35 6.73 -2.29 -0.02 0.33 16 4 C -0.13 -0.95 7.08 -24.45 -0.17 -1.12 16 5 C -0.13 -1.13 6.48 -24.77 -0.16 -1.29 16 6 C 0.05 0.55 3.83 -67.88 -0.26 0.29 16 7 H 0.10 0.95 7.95 -51.93 -0.41 0.54 16 8 C 0.50 6.55 4.93 -10.99 -0.05 6.50 16 9 O -0.54 -8.75 13.78 5.55 0.08 -8.67 16 10 N -0.72 -9.04 5.41 -60.29 -0.33 -9.37 16 11 C 0.13 1.88 5.12 -4.04 -0.02 1.86 16 12 C -0.12 -1.93 3.11 -88.47 -0.27 -2.21 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.13 -2.45 6.42 -24.89 -0.16 -2.61 16 15 C 0.18 4.28 5.38 -3.06 -0.02 4.26 16 16 N -0.61 -15.38 3.39 -170.06 -0.58 -15.96 16 17 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.14 2.85 6.41 -2.53 -0.02 2.83 16 26 H 0.06 0.89 5.80 -51.93 -0.30 0.59 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.88 6.96 -51.93 -0.36 0.52 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.50 7.63 -51.93 -0.40 0.10 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 4.42 8.20 -40.82 -0.33 4.08 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 40 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 41 H 0.05 1.25 7.37 -51.93 -0.38 0.86 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -31.81 341.33 -9.90 -41.71 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.58 Total: 1.15 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.91 Total: 2.49 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -1.60 Total: -58.86 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.81 -9.90 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028447011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.405 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds