Wall clock time and date at job start Tue Mar 31 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47842 * 110.99914 * 2 1 4 4 C 1.54908 * 104.79505 * 146.36409 * 3 2 1 5 5 C 1.55138 * 101.65500 * 322.92805 * 4 3 2 6 6 C 1.47440 * 111.00112 * 120.84311 * 2 1 3 7 7 H 1.08997 * 109.89374 * 117.17016 * 6 2 1 8 8 C 1.50708 * 109.88783 * 356.14543 * 6 2 1 9 9 O 1.21281 * 120.00148 * 307.62429 * 8 6 2 10 10 N 1.34782 * 119.99819 * 127.62203 * 8 6 2 11 11 C 1.46493 * 119.99896 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47294 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.91749 * 308.90621 * 12 11 10 14 14 C 1.55154 * 111.00717 * 185.00376 * 12 11 10 15 15 C 1.54325 * 102.94445 * 206.42462 * 14 12 11 16 16 N 1.47027 * 107.26857 * 22.18975 * 15 14 12 17 17 C 1.36939 * 125.64902 * 181.02115 * 16 15 14 18 18 H 1.08000 * 120.00245 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99589 * 0.04850 * 17 16 15 20 20 N 1.31617 * 120.00564 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99627 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47093 * 119.99773 * 21 19 17 24 24 H 1.48503 * 109.46794 * 239.99465 * 21 19 17 25 25 C 1.47426 * 108.70327 * 1.06078 * 16 15 14 26 26 H 1.09003 * 109.47239 * 308.71009 * 1 2 3 27 27 H 1.08997 * 109.47251 * 68.70495 * 1 2 3 28 28 H 1.09000 * 109.47413 * 188.71221 * 1 2 3 29 29 H 1.09000 * 110.37308 * 265.19357 * 3 2 1 30 30 H 1.08997 * 110.37795 * 27.53742 * 3 2 1 31 31 H 1.09004 * 110.98983 * 81.02349 * 4 3 2 32 32 H 1.08998 * 110.98919 * 204.79898 * 4 3 2 33 33 H 1.09002 * 110.70543 * 277.27372 * 5 4 3 34 34 H 1.08998 * 110.70786 * 154.03311 * 5 4 3 35 35 H 0.96997 * 119.99445 * 0.02562 * 10 8 6 36 36 H 1.09009 * 109.47192 * 60.00183 * 11 10 8 37 37 H 1.08999 * 109.47178 * 300.00062 * 11 10 8 38 38 H 1.09004 * 110.71614 * 324.78346 * 14 12 11 39 39 H 1.08990 * 110.72354 * 88.06156 * 14 12 11 40 40 H 1.09003 * 109.88546 * 141.60295 * 15 14 12 41 41 H 1.08992 * 109.88485 * 262.77399 * 15 14 12 42 42 H 0.96998 * 120.00546 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.36570 * 217.02742 * 25 16 15 44 44 H 1.09003 * 110.36505 * 94.70764 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 6 1.9974 -0.7057 1.1818 7 1 2.5672 -1.5801 0.8676 8 6 0.8611 -1.1291 2.0767 9 8 0.0367 -0.3154 2.4363 10 7 0.7609 -2.4121 2.4773 11 6 -0.3434 -2.8235 3.3476 12 6 -0.2243 -4.3185 3.6504 13 1 -0.1062 -4.8934 2.7319 14 6 -1.4446 -4.8195 4.4671 15 6 -0.8745 -6.0329 5.2315 16 7 0.5845 -5.8625 5.2949 17 6 1.4656 -6.7360 5.8744 18 1 2.5236 -6.5190 5.8690 19 6 0.9990 -7.9007 6.4682 20 7 -0.2903 -8.1652 6.4748 21 14 2.2010 -9.0927 7.2581 22 1 3.5831 -8.5682 7.1169 23 1 1.8733 -9.2444 8.6985 24 1 2.1021 -10.4133 6.5861 25 6 0.9417 -4.5950 4.6321 26 1 -0.3634 0.6427 0.8019 27 1 -0.3633 0.3732 -0.9575 28 1 -0.3634 -1.0158 0.1557 29 1 2.2147 1.7038 -1.0182 30 1 1.2890 2.0592 0.4724 31 1 4.1302 0.9282 0.2242 32 1 3.5498 2.2721 1.2634 33 1 2.3744 0.7747 2.7392 34 1 3.8000 -0.2279 2.3137 35 1 1.4203 -3.0627 2.1899 36 1 -1.2922 -2.6290 2.8474 37 1 -0.3014 -2.2593 4.2792 38 1 -1.7853 -4.0516 5.1617 39 1 -2.2528 -5.1269 3.8036 40 1 -1.2882 -6.0639 6.2395 41 1 -1.1174 -6.9531 4.7004 42 1 -0.6164 -8.9789 6.8901 43 1 1.8793 -4.7031 4.0869 44 1 1.0187 -3.7921 5.3653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028447013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:13 Heat of formation + Delta-G solvation = -2.484496 kcal Electronic energy + Delta-G solvation = -22556.940877 eV Core-core repulsion = 19316.884594 eV Total energy + Delta-G solvation = -3240.056283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77547 -38.24998 -37.30709 -34.70945 -32.58306 -32.26938 -30.35630 -29.39969 -28.12305 -25.84987 -25.48296 -23.79822 -22.05306 -21.52662 -20.43934 -20.01388 -19.41884 -17.47681 -16.77177 -16.55625 -15.73260 -15.58230 -15.10299 -14.83405 -14.60041 -14.14959 -13.78927 -13.56416 -13.40090 -12.98945 -12.49592 -12.39093 -12.17943 -11.95449 -11.79393 -11.67954 -11.50365 -11.42954 -11.34150 -11.07547 -10.91358 -10.82560 -10.40823 -10.18213 -10.04460 -9.92650 -9.83387 -9.67749 -9.03780 -8.62193 -8.43590 -6.85066 -5.72984 -3.06696 2.47181 3.16139 3.38415 3.43779 3.46389 3.80705 4.26773 4.39785 4.47659 4.63779 4.85715 5.05933 5.09669 5.16446 5.20261 5.28000 5.40377 5.43010 5.48897 5.53004 5.57227 5.62559 5.65680 5.77178 5.86266 5.90862 5.91143 6.02628 6.04856 6.32519 6.41926 6.48021 6.51319 6.59372 6.66569 6.70547 6.88836 7.48946 7.54579 7.61471 7.81109 8.16628 8.24261 9.20391 9.80838 10.46776 11.38815 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.003249 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.196229 B = 8616.396711 C = 9242.317243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.510 5.510 3 C 0.038 3.962 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.102 0.898 8 C 0.501 3.499 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.132 3.868 12 C -0.117 4.117 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.607 5.607 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.143 3.857 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.036 0.964 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 16.528 -12.552 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.235 5.235 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.120 0.880 8 C 0.286 3.714 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.008 3.992 12 C -0.137 4.137 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.016 3.984 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.268 16.621 -12.616 21.121 hybrid contribution 0.514 -0.753 1.046 1.388 sum 3.782 15.868 -11.570 19.999 Atomic orbital electron populations 1.22934 0.86933 1.02552 1.01850 1.64040 1.09170 1.14699 1.35601 1.23151 0.95746 0.89419 1.00624 1.22699 0.97712 0.99380 0.96679 1.22745 0.99185 0.96461 0.98367 1.22636 0.94334 0.99329 0.89680 0.87965 1.20987 0.86933 0.82420 0.81051 1.90659 1.43081 1.51653 1.56818 1.46213 1.29980 1.10040 1.50743 1.21412 0.88918 0.95104 0.93780 1.22614 0.98824 0.92833 0.99459 0.90203 1.22858 0.96081 0.99968 0.98479 1.21150 0.83140 0.92694 0.97773 1.44497 1.02954 1.19685 1.66171 1.19104 0.88908 0.98678 1.29034 0.90417 1.24812 0.96216 0.98332 1.01148 1.69972 1.11369 1.26307 1.49268 0.86045 0.79904 0.80992 0.78818 1.20505 1.21748 1.21744 1.21573 0.94546 0.89623 0.92625 0.91694 0.91907 0.91882 0.89876 0.93020 0.90334 0.90442 0.90392 0.89861 0.76244 0.91758 0.91376 0.92242 0.91984 0.93902 0.93531 0.93792 0.94615 0.96391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.19 60.06 0.49 0.55 16 2 N -0.51 -5.51 5.44 -232.95 -1.27 -6.77 16 3 C 0.04 0.34 6.73 -2.30 -0.02 0.33 16 4 C -0.13 -0.97 7.08 -24.59 -0.17 -1.14 16 5 C -0.13 -1.19 6.45 -24.91 -0.16 -1.35 16 6 C 0.05 0.54 3.84 -67.87 -0.26 0.28 16 7 H 0.10 0.93 7.95 -51.93 -0.41 0.52 16 8 C 0.50 6.51 4.93 -10.98 -0.05 6.46 16 9 O -0.54 -8.72 13.77 5.56 0.08 -8.64 16 10 N -0.72 -8.96 5.50 -60.29 -0.33 -9.29 16 11 C 0.13 1.87 5.13 -4.05 -0.02 1.85 16 12 C -0.12 -1.92 3.05 -88.48 -0.27 -2.19 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.13 -2.45 6.42 -24.90 -0.16 -2.61 16 15 C 0.18 4.26 5.37 -3.06 -0.02 4.25 16 16 N -0.61 -15.35 3.39 -170.07 -0.58 -15.93 16 17 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -27.05 10.31 55.49 0.57 -26.48 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.14 2.83 6.65 -2.53 -0.02 2.82 16 26 H 0.06 0.87 5.81 -51.93 -0.30 0.57 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.79 6.96 -51.93 -0.36 0.42 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.49 7.63 -51.93 -0.40 0.10 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 4.33 8.34 -40.82 -0.34 3.99 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 41 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -31.76 341.49 -9.89 -41.65 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.58 Total: 0.95 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.91 Total: 2.39 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -1.60 Total: -58.47 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.76 -9.89 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028447013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.165 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds