Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47842 * 110.99914 * 2 1 4 4 C 1.54908 * 104.79505 * 146.36409 * 3 2 1 5 5 C 1.55138 * 101.65500 * 322.92805 * 4 3 2 6 6 C 1.47440 * 111.00112 * 120.84311 * 2 1 3 7 7 H 1.08997 * 109.89374 * 117.17016 * 6 2 1 8 8 C 1.50708 * 109.88783 * 356.14543 * 6 2 1 9 9 O 1.21281 * 120.00148 * 307.62429 * 8 6 2 10 10 N 1.34782 * 119.99819 * 127.62203 * 8 6 2 11 11 C 1.46493 * 119.99896 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47294 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.91749 * 308.90621 * 12 11 10 14 14 C 1.55154 * 111.00717 * 185.00376 * 12 11 10 15 15 C 1.54325 * 102.94445 * 206.42462 * 14 12 11 16 16 N 1.47027 * 107.26857 * 22.18975 * 15 14 12 17 17 C 1.36939 * 125.64902 * 181.02115 * 16 15 14 18 18 H 1.08000 * 120.00245 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99589 * 0.04850 * 17 16 15 20 20 N 1.31617 * 120.00564 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99627 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47093 * 119.99773 * 21 19 17 24 24 H 1.48503 * 109.46794 * 239.99465 * 21 19 17 25 25 C 1.47426 * 108.70327 * 1.06078 * 16 15 14 26 26 H 1.09003 * 109.47239 * 308.71009 * 1 2 3 27 27 H 1.08997 * 109.47251 * 68.70495 * 1 2 3 28 28 H 1.09000 * 109.47413 * 188.71221 * 1 2 3 29 29 H 1.09000 * 110.37308 * 265.19357 * 3 2 1 30 30 H 1.08997 * 110.37795 * 27.53742 * 3 2 1 31 31 H 1.09004 * 110.98983 * 81.02349 * 4 3 2 32 32 H 1.08998 * 110.98919 * 204.79898 * 4 3 2 33 33 H 1.09002 * 110.70543 * 277.27372 * 5 4 3 34 34 H 1.08998 * 110.70786 * 154.03311 * 5 4 3 35 35 H 0.96997 * 119.99445 * 0.02562 * 10 8 6 36 36 H 1.09009 * 109.47192 * 60.00183 * 11 10 8 37 37 H 1.08999 * 109.47178 * 300.00062 * 11 10 8 38 38 H 1.09004 * 110.71614 * 324.78346 * 14 12 11 39 39 H 1.08990 * 110.72354 * 88.06156 * 14 12 11 40 40 H 1.09003 * 109.88546 * 141.60295 * 15 14 12 41 41 H 1.08992 * 109.88485 * 262.77399 * 15 14 12 42 42 H 0.96998 * 120.00546 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.36570 * 217.02742 * 25 16 15 44 44 H 1.09003 * 110.36505 * 94.70764 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 6 1.9974 -0.7057 1.1818 7 1 2.5672 -1.5801 0.8676 8 6 0.8611 -1.1291 2.0767 9 8 0.0367 -0.3154 2.4363 10 7 0.7609 -2.4121 2.4773 11 6 -0.3434 -2.8235 3.3476 12 6 -0.2243 -4.3185 3.6504 13 1 -0.1062 -4.8934 2.7319 14 6 -1.4446 -4.8195 4.4671 15 6 -0.8745 -6.0329 5.2315 16 7 0.5845 -5.8625 5.2949 17 6 1.4656 -6.7360 5.8744 18 1 2.5236 -6.5190 5.8690 19 6 0.9990 -7.9007 6.4682 20 7 -0.2903 -8.1652 6.4748 21 14 2.2010 -9.0927 7.2581 22 1 3.5831 -8.5682 7.1169 23 1 1.8733 -9.2444 8.6985 24 1 2.1021 -10.4133 6.5861 25 6 0.9417 -4.5950 4.6321 26 1 -0.3634 0.6427 0.8019 27 1 -0.3633 0.3732 -0.9575 28 1 -0.3634 -1.0158 0.1557 29 1 2.2147 1.7038 -1.0182 30 1 1.2890 2.0592 0.4724 31 1 4.1302 0.9282 0.2242 32 1 3.5498 2.2721 1.2634 33 1 2.3744 0.7747 2.7392 34 1 3.8000 -0.2279 2.3137 35 1 1.4203 -3.0627 2.1899 36 1 -1.2922 -2.6290 2.8474 37 1 -0.3014 -2.2593 4.2792 38 1 -1.7853 -4.0516 5.1617 39 1 -2.2528 -5.1269 3.8036 40 1 -1.2882 -6.0639 6.2395 41 1 -1.1174 -6.9531 4.7004 42 1 -0.6164 -8.9789 6.8901 43 1 1.8793 -4.7031 4.0869 44 1 1.0187 -3.7921 5.3653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028447013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = -25.434997 kcal Electronic energy + Delta-G solvation = -22557.936086 eV Core-core repulsion = 19316.884594 eV Total energy + Delta-G solvation = -3241.051492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.72348 -39.58707 -38.49427 -36.05760 -34.35016 -33.05377 -31.84215 -30.71481 -29.57133 -27.28709 -26.59487 -25.36816 -23.09717 -22.20207 -21.96752 -21.54077 -20.62301 -18.89963 -18.26421 -17.61134 -16.78125 -16.68279 -16.55685 -16.08867 -15.94615 -15.52659 -15.03477 -14.82991 -14.51485 -14.05022 -13.91052 -13.76707 -13.58780 -13.31906 -13.04290 -12.90619 -12.75919 -12.66778 -12.47846 -12.27240 -12.06199 -11.98081 -11.89848 -11.86273 -11.70273 -11.56046 -11.48326 -10.99899 -10.72110 -10.12579 -9.31885 -8.90433 -7.85430 -5.21168 1.46201 1.47042 1.48060 1.57437 2.14662 2.49334 3.00760 3.33105 3.49213 3.59911 3.69805 3.73667 3.88146 4.01029 4.03177 4.17333 4.31475 4.39844 4.43079 4.54075 4.59617 4.61779 4.68125 4.79077 4.81521 4.89399 4.90152 4.97982 5.01732 5.05484 5.05854 5.08430 5.27042 5.34893 5.45658 5.47574 5.66562 5.77161 5.79754 5.88988 6.19698 6.50469 7.10032 7.17261 7.77710 8.42026 9.25309 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.003249 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.196229 B = 8616.396711 C = 9242.317243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.514 5.514 3 C 0.033 3.967 4 C -0.119 4.119 5 C -0.129 4.129 6 C 0.051 3.949 7 H 0.122 0.878 8 C 0.500 3.500 9 O -0.577 6.577 10 N -0.713 5.713 11 C 0.145 3.855 12 C -0.095 4.095 13 H 0.090 0.910 14 C -0.123 4.123 15 C 0.183 3.817 16 N -0.630 5.630 17 C -0.241 4.241 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.292 1.292 25 C 0.139 3.861 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.003 0.997 41 H 0.013 0.987 42 H 0.246 0.754 43 H 0.050 0.950 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 17.569 -14.057 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.239 5.239 3 C -0.094 4.094 4 C -0.156 4.156 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.140 0.860 8 C 0.287 3.713 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.021 3.979 12 C -0.114 4.114 13 H 0.108 0.892 14 C -0.162 4.162 15 C 0.058 3.942 16 N -0.356 5.356 17 C -0.370 4.370 18 H 0.102 0.898 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.219 1.219 25 C 0.014 3.986 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.021 0.979 41 H 0.031 0.969 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.041 17.689 -14.148 23.205 hybrid contribution -0.024 -1.027 1.512 1.828 sum 5.017 16.661 -12.636 21.504 Atomic orbital electron populations 1.22806 0.87657 1.01354 1.01745 1.64140 1.08474 1.15826 1.35435 1.23263 0.96124 0.88264 1.01752 1.22712 0.97319 0.99649 0.95965 1.22773 0.99229 0.96620 0.98199 1.22793 0.93557 1.00355 0.89306 0.86036 1.21465 0.87093 0.81960 0.80767 1.90656 1.44463 1.52517 1.58060 1.46123 1.29725 1.10347 1.50278 1.21127 0.89938 0.93046 0.93806 1.22408 0.96035 0.94400 0.98574 0.89184 1.22721 0.97195 0.97606 0.98663 1.20915 0.83178 0.94109 0.96010 1.44831 1.03235 1.21080 1.66459 1.19526 0.89760 0.99153 1.28609 0.89754 1.25679 0.97880 1.00301 1.02305 1.70198 1.13151 1.26510 1.50326 0.85002 0.78569 0.78485 0.77232 1.18755 1.22167 1.21868 1.21753 0.96567 0.87241 0.93054 0.93833 0.90571 0.93000 0.88344 0.94113 0.88830 0.89194 0.92455 0.88139 0.75002 0.91090 0.92467 0.91204 0.89663 0.97872 0.96882 0.94469 0.93190 0.96514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 8.19 127.69 1.05 1.32 16 2 N -0.51 -10.07 5.44 -890.92 -4.85 -14.92 16 3 C 0.03 0.53 6.73 86.77 0.58 1.11 16 4 C -0.12 -1.48 7.08 31.98 0.23 -1.26 16 5 C -0.13 -2.10 6.45 31.78 0.20 -1.90 16 6 C 0.05 0.96 3.84 44.52 0.17 1.13 16 7 H 0.12 1.83 7.95 -2.39 -0.02 1.81 16 8 C 0.50 12.26 4.93 87.66 0.43 12.70 16 9 O -0.58 -18.15 13.77 -3.03 -0.04 -18.19 16 10 N -0.71 -16.27 5.50 -463.05 -2.55 -18.82 16 11 C 0.15 3.85 5.13 86.38 0.44 4.29 16 12 C -0.09 -2.91 3.05 -9.40 -0.03 -2.94 16 13 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 14 C -0.12 -4.34 6.42 31.78 0.20 -4.14 16 15 C 0.18 9.02 5.37 86.73 0.47 9.49 16 16 N -0.63 -32.03 3.39 -691.98 -2.35 -34.38 16 17 C -0.24 -13.46 10.28 84.03 0.86 -12.60 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 20 N -0.95 -57.70 10.31 21.65 0.22 -57.48 16 21 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 C 0.14 5.34 6.65 86.85 0.58 5.91 16 26 H 0.04 1.16 5.81 -2.39 -0.01 1.14 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.24 6.96 -2.39 -0.02 1.22 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.73 7.63 -2.39 -0.02 0.72 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.18 7.70 -2.39 -0.02 1.16 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.41 7.74 8.34 -92.71 -0.77 6.97 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 38 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.00 0.17 7.51 -2.39 -0.02 0.15 16 41 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 42 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.02 0.67 7.91 -2.39 -0.02 0.65 16 Total: -1.00 -70.28 341.49 -1.68 -71.96 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.20 Total: 14.48 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 5.65 Total: 9.66 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -9.52 Total: -125.59 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.04 Total: -18.19 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.28 -1.68 -71.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028447013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.527 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds