Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47841 * 110.99773 * 2 1 4 4 C 1.54910 * 104.79787 * 213.63925 * 3 2 1 5 5 C 1.55139 * 101.65331 * 37.07253 * 4 3 2 6 6 C 1.47449 * 110.99806 * 239.16447 * 2 1 3 7 7 H 1.09001 * 109.88185 * 242.66411 * 6 2 1 8 8 C 1.50695 * 109.88882 * 3.68397 * 6 2 1 9 9 O 1.21280 * 119.99996 * 52.42730 * 8 6 2 10 10 N 1.34778 * 120.00285 * 232.43088 * 8 6 2 11 11 C 1.46500 * 120.00387 * 180.02562 * 10 8 6 12 12 C 1.52994 * 109.47275 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.64196 * 56.68454 * 12 11 10 14 14 C 1.55155 * 110.71927 * 180.02562 * 12 11 10 15 15 C 1.54908 * 101.58241 * 153.86510 * 14 12 11 16 16 N 1.47426 * 104.83514 * 322.99018 * 15 14 12 17 17 C 1.36926 * 125.65428 * 204.16419 * 16 15 14 18 18 H 1.07996 * 120.00367 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99876 * 359.95767 * 17 16 15 20 20 N 1.31616 * 119.99542 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00148 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47228 * 89.99685 * 21 19 17 23 23 H 1.48494 * 109.47346 * 209.99909 * 21 19 17 24 24 H 1.48500 * 109.47124 * 329.99955 * 21 19 17 25 25 C 1.47024 * 108.69880 * 24.12544 * 16 15 14 26 26 H 1.09002 * 109.46778 * 171.32074 * 1 2 3 27 27 H 1.08996 * 109.46943 * 51.32050 * 1 2 3 28 28 H 1.08998 * 109.46795 * 291.31798 * 1 2 3 29 29 H 1.08995 * 110.37904 * 332.47317 * 3 2 1 30 30 H 1.09004 * 110.37502 * 94.81292 * 3 2 1 31 31 H 1.08999 * 110.98996 * 278.97959 * 4 3 2 32 32 H 1.08998 * 110.99184 * 155.16396 * 4 3 2 33 33 H 1.08996 * 110.70973 * 205.96703 * 5 4 3 34 34 H 1.09002 * 110.70493 * 82.72689 * 5 4 3 35 35 H 0.97002 * 119.99686 * 359.97438 * 10 8 6 36 36 H 1.09004 * 109.46997 * 299.99687 * 11 10 8 37 37 H 1.09003 * 109.47267 * 59.99460 * 11 10 8 38 38 H 1.09000 * 111.00429 * 271.93969 * 14 12 11 39 39 H 1.09001 * 111.00589 * 35.79012 * 14 12 11 40 40 H 1.09006 * 110.36988 * 204.14966 * 15 14 12 41 41 H 1.09002 * 110.46034 * 81.87287 * 15 14 12 42 42 H 0.97005 * 119.99489 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.88543 * 239.52197 * 25 16 15 44 44 H 1.09005 * 110.00828 * 118.43061 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 -0.8297 5 6 2.9158 0.2823 -1.9316 6 6 1.9974 -0.7056 -1.1820 7 1 2.5697 -1.5784 -0.8676 8 6 0.8609 -1.1325 -2.0747 9 8 0.0347 -0.3208 -2.4346 10 7 0.7625 -2.4162 -2.4732 11 6 -0.3421 -2.8312 -3.3415 12 6 -0.2199 -4.3261 -3.6431 13 1 -0.1985 -4.9040 -2.7191 14 6 -1.3773 -4.7969 -4.5630 15 6 -0.7372 -6.0192 -5.2672 16 7 0.6705 -5.6372 -5.4813 17 6 1.5002 -6.1524 -6.4409 18 1 2.5199 -5.8047 -6.5166 19 6 1.0309 -7.1222 -7.3164 20 7 -0.2115 -7.5466 -7.2236 21 14 2.1626 -7.8246 -8.6260 22 1 2.8710 -9.0116 -8.0833 23 1 1.3609 -8.2251 -9.8101 24 1 3.1558 -6.7955 -9.0258 25 6 1.0356 -4.6106 -4.4942 26 1 -0.3633 -1.0159 -0.1551 27 1 -0.3633 0.6422 -0.8022 28 1 -0.3633 0.3736 0.9573 29 1 1.2889 2.0593 -0.4722 30 1 2.2148 1.7038 1.0182 31 1 4.1302 0.9283 -0.2244 32 1 3.5494 2.2721 -1.2640 33 1 3.7999 -0.2277 -2.3139 34 1 2.3743 0.7749 -2.7392 35 1 1.4235 -3.0653 -2.1856 36 1 -1.2906 -2.6376 -2.8405 37 1 -0.3023 -2.2683 -4.2741 38 1 -2.2462 -5.0947 -3.9763 39 1 -1.6415 -4.0242 -5.2850 40 1 -1.2286 -6.2074 -6.2219 41 1 -0.7981 -6.9013 -4.6297 42 1 -0.5395 -8.2240 -7.8356 43 1 1.3513 -3.7009 -5.0049 44 1 1.8407 -4.9759 -3.8565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028447014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -1.188046 kcal Electronic energy + Delta-G solvation = -22603.524794 eV Core-core repulsion = 19363.524729 eV Total energy + Delta-G solvation = -3240.000065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76770 -38.26547 -37.29655 -34.69978 -32.58986 -32.26194 -30.35001 -29.40928 -28.07671 -25.84797 -25.50858 -23.78921 -22.06101 -21.51763 -20.49828 -19.90880 -19.38456 -17.47582 -16.81227 -16.53410 -15.73030 -15.58130 -15.05391 -14.95279 -14.62941 -14.17195 -13.77683 -13.56105 -13.35233 -12.94546 -12.53175 -12.39413 -12.11155 -11.79331 -11.75695 -11.66463 -11.54187 -11.45186 -11.36062 -11.06422 -10.96943 -10.82268 -10.43955 -10.17488 -10.06084 -9.99085 -9.80569 -9.54323 -9.02940 -8.66895 -8.43122 -6.85662 -5.67378 -3.09111 2.48305 3.17058 3.38598 3.43517 3.45630 3.81348 4.27725 4.40599 4.46832 4.64593 4.86462 5.06699 5.10479 5.17113 5.23458 5.28474 5.38314 5.43589 5.49611 5.50566 5.58064 5.63772 5.66375 5.77660 5.85609 5.91256 5.92267 6.05601 6.08971 6.31846 6.43436 6.52794 6.56267 6.59805 6.69562 6.71087 6.88206 7.49116 7.50115 7.60664 7.83634 8.17757 8.34453 9.20152 9.81142 10.45949 11.36631 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.003319 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.265844 B = 8434.108938 C = 9105.712509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.510 5.510 3 C 0.038 3.962 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.102 0.898 8 C 0.501 3.499 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.132 3.868 12 C -0.115 4.115 13 H 0.076 0.924 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.142 3.858 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.012 0.988 42 H 0.252 0.748 43 H 0.023 0.977 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 14.625 14.167 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.235 5.235 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.120 0.880 8 C 0.286 3.714 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.008 3.992 12 C -0.134 4.134 13 H 0.094 0.906 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.016 3.984 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.883 14.778 14.170 20.676 hybrid contribution 0.581 -0.486 -1.161 1.387 sum 3.464 14.292 13.009 19.633 Atomic orbital electron populations 1.22934 0.86946 1.02543 1.01839 1.64049 1.09165 1.14706 1.35591 1.23151 0.95756 0.89419 1.00617 1.22699 0.97701 0.99390 0.96670 1.22746 0.99192 0.96465 0.98375 1.22627 0.94334 0.99316 0.89703 0.88008 1.20971 0.86949 0.82418 0.81038 1.90660 1.42984 1.51804 1.56724 1.46213 1.29902 1.10023 1.50863 1.21462 0.88846 0.95007 0.93866 1.22447 0.98598 0.93195 0.99167 0.90559 1.23003 0.95905 1.00756 0.97757 1.21934 0.84457 0.90516 1.00406 1.44500 1.09600 1.44207 1.34745 1.19075 0.93301 1.16401 1.06429 0.90534 1.24796 0.96774 0.99319 0.99802 1.69797 1.14304 1.33264 1.39713 0.86066 0.79384 0.78934 0.81076 1.21616 1.21626 1.20694 1.21312 0.93654 0.92628 0.90828 0.91899 0.91687 0.91916 0.93015 0.89877 0.90335 0.90432 0.89852 0.90385 0.76287 0.91751 0.91297 0.92122 0.91869 0.87543 0.96972 0.93708 0.95883 0.96423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.18 60.07 0.49 0.55 16 2 N -0.51 -5.56 5.44 -232.95 -1.27 -6.83 16 3 C 0.04 0.35 6.73 -2.30 -0.02 0.33 16 4 C -0.13 -0.99 7.08 -24.59 -0.17 -1.16 16 5 C -0.13 -1.23 6.46 -24.91 -0.16 -1.39 16 6 C 0.05 0.55 3.83 -67.88 -0.26 0.29 16 7 H 0.10 0.94 7.95 -51.93 -0.41 0.53 16 8 C 0.50 6.66 4.94 -10.99 -0.05 6.60 16 9 O -0.54 -8.89 13.78 5.56 0.08 -8.82 16 10 N -0.72 -9.18 5.40 -60.30 -0.33 -9.50 16 11 C 0.13 1.93 4.99 -4.04 -0.02 1.91 16 12 C -0.11 -1.89 3.02 -88.79 -0.27 -2.16 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.13 -2.49 6.53 -24.58 -0.16 -2.65 16 15 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 16 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 17 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.14 2.85 6.52 -3.06 -0.02 2.83 16 26 H 0.06 0.79 6.96 -51.93 -0.36 0.43 16 27 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.50 7.63 -51.93 -0.40 0.10 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.87 7.71 -51.93 -0.40 0.47 16 35 H 0.40 4.41 8.19 -40.82 -0.33 4.08 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 40 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.02 0.48 7.76 -51.93 -0.40 0.07 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -31.50 340.46 -9.86 -41.36 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.52 Total: 1.92 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.91 Total: 1.99 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -1.61 Total: -58.56 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.50 -9.86 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028447014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.169 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds