Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47841 * 110.99773 * 2 1 4 4 C 1.54910 * 104.79787 * 213.63925 * 3 2 1 5 5 C 1.55139 * 101.65331 * 37.07253 * 4 3 2 6 6 C 1.47449 * 110.99806 * 239.16447 * 2 1 3 7 7 H 1.09001 * 109.88185 * 242.66411 * 6 2 1 8 8 C 1.50695 * 109.88882 * 3.68397 * 6 2 1 9 9 O 1.21280 * 119.99996 * 52.42730 * 8 6 2 10 10 N 1.34778 * 120.00285 * 232.43088 * 8 6 2 11 11 C 1.46500 * 120.00387 * 180.02562 * 10 8 6 12 12 C 1.52994 * 109.47275 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.64196 * 56.68454 * 12 11 10 14 14 C 1.55155 * 110.71927 * 180.02562 * 12 11 10 15 15 C 1.54908 * 101.58241 * 153.86510 * 14 12 11 16 16 N 1.47426 * 104.83514 * 322.99018 * 15 14 12 17 17 C 1.36926 * 125.65428 * 204.16419 * 16 15 14 18 18 H 1.07996 * 120.00367 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99876 * 359.95767 * 17 16 15 20 20 N 1.31616 * 119.99542 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00148 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47228 * 89.99685 * 21 19 17 23 23 H 1.48494 * 109.47346 * 209.99909 * 21 19 17 24 24 H 1.48500 * 109.47124 * 329.99955 * 21 19 17 25 25 C 1.47024 * 108.69880 * 24.12544 * 16 15 14 26 26 H 1.09002 * 109.46778 * 171.32074 * 1 2 3 27 27 H 1.08996 * 109.46943 * 51.32050 * 1 2 3 28 28 H 1.08998 * 109.46795 * 291.31798 * 1 2 3 29 29 H 1.08995 * 110.37904 * 332.47317 * 3 2 1 30 30 H 1.09004 * 110.37502 * 94.81292 * 3 2 1 31 31 H 1.08999 * 110.98996 * 278.97959 * 4 3 2 32 32 H 1.08998 * 110.99184 * 155.16396 * 4 3 2 33 33 H 1.08996 * 110.70973 * 205.96703 * 5 4 3 34 34 H 1.09002 * 110.70493 * 82.72689 * 5 4 3 35 35 H 0.97002 * 119.99686 * 359.97438 * 10 8 6 36 36 H 1.09004 * 109.46997 * 299.99687 * 11 10 8 37 37 H 1.09003 * 109.47267 * 59.99460 * 11 10 8 38 38 H 1.09000 * 111.00429 * 271.93969 * 14 12 11 39 39 H 1.09001 * 111.00589 * 35.79012 * 14 12 11 40 40 H 1.09006 * 110.36988 * 204.14966 * 15 14 12 41 41 H 1.09002 * 110.46034 * 81.87287 * 15 14 12 42 42 H 0.97005 * 119.99489 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.88543 * 239.52197 * 25 16 15 44 44 H 1.09005 * 110.00828 * 118.43061 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 -0.8297 5 6 2.9158 0.2823 -1.9316 6 6 1.9974 -0.7056 -1.1820 7 1 2.5697 -1.5784 -0.8676 8 6 0.8609 -1.1325 -2.0747 9 8 0.0347 -0.3208 -2.4346 10 7 0.7625 -2.4162 -2.4732 11 6 -0.3421 -2.8312 -3.3415 12 6 -0.2199 -4.3261 -3.6431 13 1 -0.1985 -4.9040 -2.7191 14 6 -1.3773 -4.7969 -4.5630 15 6 -0.7372 -6.0192 -5.2672 16 7 0.6705 -5.6372 -5.4813 17 6 1.5002 -6.1524 -6.4409 18 1 2.5199 -5.8047 -6.5166 19 6 1.0309 -7.1222 -7.3164 20 7 -0.2115 -7.5466 -7.2236 21 14 2.1626 -7.8246 -8.6260 22 1 2.8710 -9.0116 -8.0833 23 1 1.3609 -8.2251 -9.8101 24 1 3.1558 -6.7955 -9.0258 25 6 1.0356 -4.6106 -4.4942 26 1 -0.3633 -1.0159 -0.1551 27 1 -0.3633 0.6422 -0.8022 28 1 -0.3633 0.3736 0.9573 29 1 1.2889 2.0593 -0.4722 30 1 2.2148 1.7038 1.0182 31 1 4.1302 0.9283 -0.2244 32 1 3.5494 2.2721 -1.2640 33 1 3.7999 -0.2277 -2.3139 34 1 2.3743 0.7749 -2.7392 35 1 1.4235 -3.0653 -2.1856 36 1 -1.2906 -2.6376 -2.8405 37 1 -0.3023 -2.2683 -4.2741 38 1 -2.2462 -5.0947 -3.9763 39 1 -1.6415 -4.0242 -5.2850 40 1 -1.2286 -6.2074 -6.2219 41 1 -0.7981 -6.9013 -4.6297 42 1 -0.5395 -8.2240 -7.8356 43 1 1.3513 -3.7009 -5.0049 44 1 1.8407 -4.9759 -3.8565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028447014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -23.776252 kcal Electronic energy + Delta-G solvation = -22604.504292 eV Core-core repulsion = 19363.524729 eV Total energy + Delta-G solvation = -3240.979563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73901 -39.60850 -38.49607 -36.07733 -34.35123 -33.06198 -31.85160 -30.71833 -29.53314 -27.32325 -26.60367 -25.36023 -23.13735 -22.21112 -22.07649 -21.36296 -20.62883 -18.92939 -18.30433 -17.60149 -16.87176 -16.67729 -16.59547 -16.05172 -16.00858 -15.54781 -15.10094 -14.63500 -14.54542 -14.28858 -13.79952 -13.56392 -13.49610 -13.34991 -13.13965 -12.92986 -12.79522 -12.69003 -12.48315 -12.28100 -12.07209 -12.02004 -11.90887 -11.83244 -11.72301 -11.60296 -11.39067 -10.99982 -10.74608 -10.14578 -9.33029 -8.88938 -7.78181 -5.22372 1.46323 1.46693 1.48125 1.56857 2.13219 2.49256 2.99920 3.31541 3.47835 3.61315 3.69802 3.74421 3.86335 3.96780 4.05081 4.16312 4.30605 4.39173 4.43430 4.53241 4.59967 4.63062 4.67624 4.76255 4.80601 4.88331 4.89665 4.97261 5.01074 5.05183 5.07679 5.10983 5.26087 5.34596 5.42618 5.47702 5.64680 5.78502 5.81856 5.88140 6.31073 6.49061 7.10546 7.15974 7.78511 8.41987 9.23835 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.003319 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.265844 B = 8434.108938 C = 9105.712509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.513 5.513 3 C 0.033 3.967 4 C -0.118 4.118 5 C -0.130 4.130 6 C 0.051 3.949 7 H 0.122 0.878 8 C 0.500 3.500 9 O -0.578 6.578 10 N -0.713 5.713 11 C 0.145 3.855 12 C -0.094 4.094 13 H 0.096 0.904 14 C -0.123 4.123 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.139 3.861 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.070 0.930 41 H -0.009 1.009 42 H 0.247 0.753 43 H 0.020 0.980 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 15.491 15.707 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.094 4.094 4 C -0.156 4.156 5 C -0.169 4.169 6 C -0.060 4.060 7 H 0.140 0.860 8 C 0.287 3.713 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.021 3.979 12 C -0.113 4.113 13 H 0.114 0.886 14 C -0.162 4.162 15 C 0.027 3.973 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.098 0.902 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.014 3.986 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.009 0.991 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.404 15.660 15.741 22.637 hybrid contribution 0.120 -0.727 -1.617 1.777 sum 4.524 14.933 14.125 21.047 Atomic orbital electron populations 1.22808 0.87645 1.01370 1.01744 1.64156 1.08484 1.15808 1.35319 1.23266 0.96089 0.88267 1.01783 1.22712 0.97371 0.99600 0.95921 1.22776 0.99219 0.96684 0.98231 1.22784 0.93505 1.00356 0.89335 0.85981 1.21476 0.87127 0.81957 0.80757 1.90657 1.44409 1.52684 1.58000 1.46118 1.29646 1.10347 1.50350 1.21171 0.89969 0.93184 0.93608 1.22283 0.95606 0.94644 0.98756 0.88584 1.22843 0.97209 0.98124 0.97990 1.21726 0.84454 0.92310 0.98807 1.44827 1.10044 1.45122 1.35504 1.19461 0.93921 1.16430 1.07093 0.90163 1.25646 0.98272 1.00095 1.02064 1.70058 1.15834 1.33628 1.40387 0.85048 0.77647 0.78280 0.78178 1.21241 1.22043 1.19453 1.21481 0.95714 0.91046 0.90389 0.92960 0.93922 0.90486 0.94149 0.88238 0.88748 0.89216 0.88198 0.92591 0.74993 0.90918 0.93108 0.89285 0.92045 0.91185 0.99132 0.94347 0.96210 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 8.18 127.69 1.05 1.33 16 2 N -0.51 -10.17 5.44 -890.91 -4.85 -15.02 16 3 C 0.03 0.54 6.73 86.77 0.58 1.12 16 4 C -0.12 -1.53 7.08 31.98 0.23 -1.30 16 5 C -0.13 -2.21 6.46 31.77 0.21 -2.01 16 6 C 0.05 1.00 3.83 44.51 0.17 1.17 16 7 H 0.12 1.87 7.95 -2.39 -0.02 1.86 16 8 C 0.50 12.65 4.94 87.66 0.43 13.08 16 9 O -0.58 -18.72 13.78 -3.03 -0.04 -18.76 16 10 N -0.71 -16.83 5.40 -463.06 -2.50 -19.33 16 11 C 0.14 4.00 4.99 86.38 0.43 4.43 16 12 C -0.09 -2.91 3.02 -9.61 -0.03 -2.94 16 13 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 14 C -0.12 -4.40 6.53 31.99 0.21 -4.19 16 15 C 0.15 7.43 5.89 86.85 0.51 7.95 16 16 N -0.63 -32.18 3.39 -691.97 -2.35 -34.53 16 17 C -0.24 -13.47 10.27 84.04 0.86 -12.60 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 20 N -0.95 -56.73 10.09 21.65 0.22 -56.51 16 21 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.14 5.43 6.52 86.73 0.57 5.99 16 26 H 0.05 1.25 6.96 -2.39 -0.02 1.23 16 27 H 0.04 1.15 5.81 -2.39 -0.01 1.14 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 0.74 7.63 -2.39 -0.02 0.73 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.21 7.71 -2.39 -0.02 1.19 16 35 H 0.41 7.97 8.19 -92.71 -0.76 7.21 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.05 1.61 8.06 -2.39 -0.02 1.60 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 40 H 0.07 3.95 5.87 -2.38 -0.01 3.94 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 43 H 0.02 0.79 7.76 -2.39 -0.02 0.78 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -69.43 340.46 -1.60 -71.03 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.22 Total: 16.88 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.68 Total: 8.59 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -9.48 Total: -125.40 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.04 Total: -18.76 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.43 -1.60 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028447014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.255 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds