Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47170 * 2 1 4 4 N 1.46900 * 109.47077 * 239.99991 * 2 1 3 5 5 C 1.47443 * 111.00147 * 181.52679 * 4 2 1 6 6 C 1.54312 * 107.23347 * 123.25508 * 5 4 2 7 7 C 1.55140 * 103.02333 * 22.28355 * 6 5 4 8 8 C 1.47855 * 110.99956 * 302.36724 * 4 2 1 9 9 H 1.09001 * 110.37222 * 332.46272 * 8 4 2 10 10 C 1.50696 * 110.37431 * 94.80710 * 8 4 2 11 11 O 1.21288 * 120.00122 * 0.02562 * 10 8 4 12 12 N 1.34775 * 120.00201 * 180.02562 * 10 8 4 13 13 C 1.46505 * 120.00181 * 180.02562 * 12 10 8 14 14 C 1.53944 * 113.73446 * 253.73680 * 13 12 10 15 15 N 1.47813 * 86.03232 * 222.08076 * 14 13 12 16 16 C 1.36944 * 134.45877 * 204.64115 * 15 14 13 17 17 H 1.07998 * 119.99948 * 179.87108 * 16 15 14 18 18 C 1.38812 * 119.99739 * 359.87679 * 16 15 14 19 19 N 1.31626 * 119.99955 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47277 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47237 * 119.99830 * 20 18 16 23 23 H 1.48502 * 109.47319 * 239.99683 * 20 18 16 24 24 C 1.47582 * 91.05275 * 24.55345 * 15 14 13 25 25 H 1.08999 * 109.46549 * 60.00049 * 1 2 3 26 26 H 1.09000 * 109.46919 * 300.00069 * 1 2 3 27 27 H 1.08996 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47154 * 120.00382 * 2 1 3 29 29 H 1.09001 * 109.47555 * 54.31498 * 3 2 1 30 30 H 1.09003 * 109.47044 * 174.31624 * 3 2 1 31 31 H 1.09002 * 109.47125 * 294.31070 * 3 2 1 32 32 H 1.09001 * 109.88836 * 242.65952 * 5 4 2 33 33 H 1.09002 * 109.88492 * 3.84739 * 5 4 2 34 34 H 1.09007 * 110.70587 * 140.66587 * 6 5 4 35 35 H 1.09001 * 110.70907 * 263.89719 * 6 5 4 36 36 H 1.09003 * 110.98881 * 82.43670 * 7 6 5 37 37 H 1.08997 * 110.99087 * 206.25029 * 7 6 5 38 38 H 0.96997 * 119.99759 * 359.97438 * 12 10 8 39 39 H 1.09001 * 112.94370 * 25.32891 * 13 12 10 40 40 H 1.08994 * 113.77438 * 336.34577 * 14 13 12 41 41 H 1.09005 * 113.76825 * 107.75386 * 14 13 12 42 42 H 0.97003 * 119.99183 * 179.97438 * 19 18 16 43 43 H 1.08999 * 113.76929 * 221.15229 * 24 15 14 44 44 H 1.09001 * 113.87290 * 89.76255 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4932 -0.7440 -1.2153 6 6 3.8976 -2.2297 -1.3172 7 6 2.6347 -2.8949 -1.9250 8 6 1.4996 -2.0751 -1.2624 9 1 1.2965 -2.4502 -0.2593 10 6 0.2523 -2.1285 -2.1064 11 8 -0.1781 -1.1162 -2.6172 12 7 -0.3849 -3.3012 -2.2937 13 6 -1.5972 -3.3533 -3.1147 14 6 -2.8909 -3.5294 -2.2990 15 7 -3.3003 -4.4868 -3.3481 16 6 -4.5048 -4.9462 -3.8102 17 1 -4.5355 -5.6666 -4.6142 18 6 -5.6862 -4.4859 -3.2451 19 7 -5.6486 -3.6081 -2.2649 20 14 -7.3292 -5.1120 -3.8758 21 1 -7.0998 -6.0845 -4.9743 22 1 -8.0628 -5.7779 -2.7696 23 1 -8.1314 -3.9708 -4.3852 24 6 -1.8906 -4.7469 -3.6991 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.5960 1.9849 0.8347 30 1 3.1253 1.4441 0.1018 31 1 1.7623 1.9260 -0.9366 32 1 3.8741 -0.1961 -2.0772 33 1 3.8891 -0.3141 -0.2953 34 1 4.7542 -2.3514 -1.9803 35 1 4.1118 -2.6395 -0.3301 36 1 2.6168 -2.7813 -3.0090 37 1 2.5730 -3.9460 -1.6432 38 1 -0.0405 -4.1109 -1.8855 39 1 -1.6476 -2.5497 -3.8495 40 1 -2.7355 -3.9878 -1.3224 41 1 -3.5087 -2.6324 -2.2560 42 1 -6.4743 -3.2862 -1.8704 43 1 -1.7113 -4.8201 -4.7717 44 1 -1.4392 -5.5635 -3.1357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030300751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = 26.666184 kcal Electronic energy + Delta-G solvation = -22961.327804 eV Core-core repulsion = 19722.535589 eV Total energy + Delta-G solvation = -3238.792215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28558 -38.55324 -37.06826 -34.59728 -33.31700 -31.79578 -29.87497 -29.29753 -27.40506 -26.75098 -24.79597 -23.80635 -22.40301 -21.46151 -20.33800 -19.73387 -19.27756 -17.10900 -16.76445 -16.52486 -15.64186 -15.08839 -14.93449 -14.67819 -14.21398 -13.84583 -13.76404 -13.43783 -13.26520 -12.69274 -12.54405 -12.39137 -12.00708 -11.84034 -11.70492 -11.44611 -11.40769 -11.35294 -11.27011 -11.07281 -10.90734 -10.88482 -10.83886 -10.71753 -10.35546 -9.99289 -9.52971 -9.25729 -8.79985 -8.32700 -8.31152 -6.90117 -5.76210 -3.10027 3.06439 3.31176 3.40460 3.45203 3.47933 4.02729 4.38589 4.47728 4.49357 4.71822 4.96499 5.01527 5.04798 5.07538 5.21010 5.30440 5.32098 5.46305 5.50648 5.59005 5.61033 5.63720 5.69588 5.76432 5.83238 5.88337 5.98048 6.01306 6.05975 6.20808 6.25434 6.44844 6.53707 6.60020 6.82546 6.87184 7.06398 7.26367 7.42405 7.59140 7.97541 8.02438 8.74741 9.04079 9.70391 10.57452 11.40564 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.003718 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.366785 B = 7528.265720 C = 8204.148288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 C -0.143 4.143 4 N -0.501 5.501 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.119 4.119 8 C 0.054 3.946 9 H 0.076 0.924 10 C 0.519 3.481 11 O -0.516 6.516 12 N -0.721 5.721 13 C 0.096 3.904 14 C 0.154 3.846 15 N -0.607 5.607 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.112 3.888 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.393 0.607 39 H 0.109 0.891 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.254 0.746 43 H 0.048 0.952 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.451 3.670 5.617 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 C -0.200 4.200 4 N -0.226 5.226 5 C -0.085 4.085 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.058 4.058 9 H 0.094 0.906 10 C 0.303 3.697 11 O -0.390 6.390 12 N -0.372 5.372 13 C -0.009 4.009 14 C 0.028 3.972 15 N -0.334 5.334 16 C -0.352 4.352 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.015 4.015 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.226 0.774 39 H 0.127 0.873 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.577 4.709 4.795 20.699 hybrid contribution -0.525 -1.344 0.825 1.662 sum 19.052 3.366 5.620 20.147 Atomic orbital electron populations 1.21934 0.93461 1.02239 1.02663 1.21787 0.96470 0.95046 0.89808 1.21858 1.00193 0.95315 1.02661 1.63212 1.06405 1.13909 1.39120 1.22855 0.87769 0.96141 1.01711 1.22795 0.98216 0.95749 1.01208 1.22682 0.92837 0.98822 1.01384 1.22512 0.94462 0.90130 0.98744 0.90610 1.20183 0.84252 0.83748 0.81527 1.90682 1.66177 1.33730 1.48455 1.46131 1.28572 1.09715 1.52814 1.23812 0.83331 0.98920 0.94856 1.22702 0.89322 0.94342 0.90837 1.45735 0.99144 1.49428 1.39110 1.19036 0.81373 1.20619 1.14200 0.90034 1.24815 0.97690 0.99482 0.98350 1.69850 1.26213 1.33498 1.26926 0.86028 0.83769 0.77971 0.77864 1.20413 1.21734 1.21607 1.22866 0.86896 0.93613 0.98107 0.90250 0.92773 0.93123 0.94664 0.92259 0.93064 0.91373 0.90352 0.92443 0.90433 0.91354 0.89966 0.90074 0.77421 0.87299 0.95545 0.90608 0.93617 0.93360 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.94 37.16 0.29 -1.70 16 2 C 0.08 0.89 2.24 -67.71 -0.15 0.74 16 3 C -0.14 -1.43 8.99 37.15 0.33 -1.09 16 4 N -0.50 -6.18 4.26 -216.84 -0.92 -7.11 16 5 C 0.04 0.40 6.22 -2.84 -0.02 0.39 16 6 C -0.14 -1.10 6.94 -24.91 -0.17 -1.27 16 7 C -0.12 -1.11 6.47 -24.60 -0.16 -1.27 16 8 C 0.05 0.65 2.22 -67.34 -0.15 0.50 16 9 H 0.08 0.85 7.51 -51.93 -0.39 0.46 16 10 C 0.52 8.28 5.71 -10.99 -0.06 8.22 16 11 O -0.52 -10.40 14.27 5.55 0.08 -10.32 16 12 N -0.72 -11.17 5.35 -55.35 -0.30 -11.46 16 13 C 0.10 1.89 4.40 -70.16 -0.31 1.58 16 14 C 0.15 3.74 7.33 -2.84 -0.02 3.72 16 15 N -0.61 -15.78 3.70 -177.91 -0.66 -16.43 16 16 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -27.76 11.39 55.49 0.63 -27.13 16 20 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.11 2.26 8.69 -2.97 -0.03 2.23 16 25 H 0.08 1.30 7.20 -51.93 -0.37 0.93 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.76 6.10 -51.93 -0.32 0.44 16 28 H 0.04 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.44 6.77 -51.93 -0.35 0.09 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.47 6.45 -51.93 -0.33 0.14 16 34 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.86 8.05 -51.93 -0.42 0.45 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.39 4.92 8.71 -40.82 -0.36 4.57 16 39 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 2.10 7.17 -51.93 -0.37 1.73 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -33.27 344.31 -9.20 -42.47 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.50 Total: 2.24 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.70 Total: 5.22 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -1.25 Total: -62.13 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.27 -9.20 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030300751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.136 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds