Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47170 * 2 1 4 4 N 1.46900 * 109.47077 * 239.99991 * 2 1 3 5 5 C 1.47443 * 111.00147 * 181.52679 * 4 2 1 6 6 C 1.54312 * 107.23347 * 123.25508 * 5 4 2 7 7 C 1.55140 * 103.02333 * 22.28355 * 6 5 4 8 8 C 1.47855 * 110.99956 * 302.36724 * 4 2 1 9 9 H 1.09001 * 110.37222 * 332.46272 * 8 4 2 10 10 C 1.50696 * 110.37431 * 94.80710 * 8 4 2 11 11 O 1.21288 * 120.00122 * 0.02562 * 10 8 4 12 12 N 1.34775 * 120.00201 * 180.02562 * 10 8 4 13 13 C 1.46505 * 120.00181 * 180.02562 * 12 10 8 14 14 C 1.53944 * 113.73446 * 253.73680 * 13 12 10 15 15 N 1.47813 * 86.03232 * 222.08076 * 14 13 12 16 16 C 1.36944 * 134.45877 * 204.64115 * 15 14 13 17 17 H 1.07998 * 119.99948 * 179.87108 * 16 15 14 18 18 C 1.38812 * 119.99739 * 359.87679 * 16 15 14 19 19 N 1.31626 * 119.99955 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47277 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47237 * 119.99830 * 20 18 16 23 23 H 1.48502 * 109.47319 * 239.99683 * 20 18 16 24 24 C 1.47582 * 91.05275 * 24.55345 * 15 14 13 25 25 H 1.08999 * 109.46549 * 60.00049 * 1 2 3 26 26 H 1.09000 * 109.46919 * 300.00069 * 1 2 3 27 27 H 1.08996 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47154 * 120.00382 * 2 1 3 29 29 H 1.09001 * 109.47555 * 54.31498 * 3 2 1 30 30 H 1.09003 * 109.47044 * 174.31624 * 3 2 1 31 31 H 1.09002 * 109.47125 * 294.31070 * 3 2 1 32 32 H 1.09001 * 109.88836 * 242.65952 * 5 4 2 33 33 H 1.09002 * 109.88492 * 3.84739 * 5 4 2 34 34 H 1.09007 * 110.70587 * 140.66587 * 6 5 4 35 35 H 1.09001 * 110.70907 * 263.89719 * 6 5 4 36 36 H 1.09003 * 110.98881 * 82.43670 * 7 6 5 37 37 H 1.08997 * 110.99087 * 206.25029 * 7 6 5 38 38 H 0.96997 * 119.99759 * 359.97438 * 12 10 8 39 39 H 1.09001 * 112.94370 * 25.32891 * 13 12 10 40 40 H 1.08994 * 113.77438 * 336.34577 * 14 13 12 41 41 H 1.09005 * 113.76825 * 107.75386 * 14 13 12 42 42 H 0.97003 * 119.99183 * 179.97438 * 19 18 16 43 43 H 1.08999 * 113.76929 * 221.15229 * 24 15 14 44 44 H 1.09001 * 113.87290 * 89.76255 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4932 -0.7440 -1.2153 6 6 3.8976 -2.2297 -1.3172 7 6 2.6347 -2.8949 -1.9250 8 6 1.4996 -2.0751 -1.2624 9 1 1.2965 -2.4502 -0.2593 10 6 0.2523 -2.1285 -2.1064 11 8 -0.1781 -1.1162 -2.6172 12 7 -0.3849 -3.3012 -2.2937 13 6 -1.5972 -3.3533 -3.1147 14 6 -2.8909 -3.5294 -2.2990 15 7 -3.3003 -4.4868 -3.3481 16 6 -4.5048 -4.9462 -3.8102 17 1 -4.5355 -5.6666 -4.6142 18 6 -5.6862 -4.4859 -3.2451 19 7 -5.6486 -3.6081 -2.2649 20 14 -7.3292 -5.1120 -3.8758 21 1 -7.0998 -6.0845 -4.9743 22 1 -8.0628 -5.7779 -2.7696 23 1 -8.1314 -3.9708 -4.3852 24 6 -1.8906 -4.7469 -3.6991 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.5960 1.9849 0.8347 30 1 3.1253 1.4441 0.1018 31 1 1.7623 1.9260 -0.9366 32 1 3.8741 -0.1961 -2.0772 33 1 3.8891 -0.3141 -0.2953 34 1 4.7542 -2.3514 -1.9803 35 1 4.1118 -2.6395 -0.3301 36 1 2.6168 -2.7813 -3.0090 37 1 2.5730 -3.9460 -1.6432 38 1 -0.0405 -4.1109 -1.8855 39 1 -1.6476 -2.5497 -3.8495 40 1 -2.7355 -3.9878 -1.3224 41 1 -3.5087 -2.6324 -2.2560 42 1 -6.4743 -3.2862 -1.8704 43 1 -1.7113 -4.8201 -4.7717 44 1 -1.4392 -5.5635 -3.1357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030300751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = 2.363828 kcal Electronic energy + Delta-G solvation = -22962.381633 eV Core-core repulsion = 19722.535589 eV Total energy + Delta-G solvation = -3239.846044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40845 -39.97388 -38.55722 -35.51220 -34.93742 -33.69066 -30.89102 -30.13378 -29.25942 -27.75056 -26.61870 -25.35544 -23.74583 -22.27603 -21.39699 -21.31445 -20.48241 -18.78362 -18.25239 -17.53367 -17.07086 -16.95494 -16.10545 -15.75939 -15.70710 -15.25477 -14.95196 -14.65875 -14.28949 -14.06507 -13.73861 -13.51314 -13.32129 -13.20930 -13.17387 -12.95049 -12.82734 -12.64442 -12.59090 -12.28166 -12.17204 -12.03228 -11.94955 -11.90771 -11.74088 -11.57110 -11.52079 -10.91207 -10.58266 -9.85740 -9.19033 -8.97847 -7.92821 -5.28291 1.44787 1.46870 1.57146 1.79589 2.11689 2.48390 3.05396 3.25954 3.40243 3.61598 3.67731 3.88383 3.96090 4.07604 4.11838 4.17513 4.25370 4.36896 4.41747 4.54122 4.61787 4.71255 4.74640 4.78168 4.88323 4.90732 4.92563 4.96991 5.01034 5.04994 5.11537 5.19930 5.25308 5.34047 5.35718 5.43756 5.47382 5.75401 5.88709 5.99814 6.22861 6.76802 6.87366 7.47725 7.57343 8.50653 9.24227 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.003718 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.366785 B = 7528.265720 C = 8204.148288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 C -0.137 4.137 4 N -0.530 5.530 5 C 0.040 3.960 6 C -0.131 4.131 7 C -0.115 4.115 8 C 0.059 3.941 9 H 0.092 0.908 10 C 0.516 3.484 11 O -0.564 6.564 12 N -0.707 5.707 13 C 0.125 3.875 14 C 0.154 3.846 15 N -0.639 5.639 16 C -0.235 4.235 17 H 0.091 0.909 18 C -0.070 4.070 19 N -0.956 5.956 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.291 1.291 23 H -0.294 1.294 24 C 0.123 3.877 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.412 0.588 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.029 0.971 42 H 0.248 0.752 43 H 0.063 0.937 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.007 2.051 6.088 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 C -0.195 4.195 4 N -0.255 5.255 5 C -0.086 4.086 6 C -0.169 4.169 7 C -0.154 4.154 8 C -0.053 4.053 9 H 0.109 0.891 10 C 0.302 3.698 11 O -0.441 6.441 12 N -0.360 5.360 13 C 0.018 3.982 14 C 0.027 3.973 15 N -0.367 5.367 16 C -0.363 4.363 17 H 0.109 0.891 18 C -0.263 4.263 19 N -0.605 5.605 20 Si 0.811 3.189 21 H -0.184 1.184 22 H -0.218 1.218 23 H -0.221 1.221 24 C -0.002 4.002 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.249 0.751 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.206 3.049 5.263 23.024 hybrid contribution -1.272 -0.788 0.670 1.639 sum 20.935 2.260 5.933 21.876 Atomic orbital electron populations 1.21872 0.95716 1.00671 1.01549 1.21793 0.94519 0.96201 0.90448 1.21816 1.01461 0.94211 1.01992 1.63090 1.08437 1.14169 1.39832 1.22916 0.85741 0.97687 1.02293 1.22782 0.97704 0.94002 1.02410 1.22727 0.92300 0.99930 1.00394 1.22475 0.93110 0.91081 0.98634 0.89076 1.21059 0.85057 0.82707 0.80957 1.90672 1.67644 1.35371 1.50448 1.45869 1.27011 1.10885 1.52254 1.23035 0.83293 0.98333 0.93551 1.22570 0.91071 0.92405 0.91277 1.46072 1.00804 1.50121 1.39666 1.19493 0.82682 1.20041 1.14062 0.89127 1.25724 1.01422 1.00118 0.98996 1.70064 1.26564 1.35239 1.28629 0.84944 0.79014 0.77377 0.77585 1.18441 1.21782 1.22122 1.23005 0.83627 0.94184 0.99414 0.93842 0.91331 0.94876 0.92700 0.91170 0.91098 0.93487 0.90955 0.90847 0.88894 0.89565 0.91394 0.87509 0.75128 0.89643 0.95761 0.95287 0.94323 0.91896 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 7.94 71.98 0.57 -3.37 16 2 C 0.08 1.72 2.24 44.91 0.10 1.82 16 3 C -0.14 -2.56 8.99 71.98 0.65 -1.92 16 4 N -0.53 -12.37 4.26 -839.95 -3.58 -15.95 16 5 C 0.04 0.65 6.22 86.64 0.54 1.19 16 6 C -0.13 -1.53 6.94 31.77 0.22 -1.30 16 7 C -0.12 -1.79 6.47 31.98 0.21 -1.59 16 8 C 0.06 1.32 2.22 44.63 0.10 1.42 16 9 H 0.09 1.79 7.51 -2.39 -0.02 1.77 16 10 C 0.52 16.42 5.71 87.66 0.50 16.92 16 11 O -0.56 -23.68 14.27 -3.06 -0.04 -23.72 16 12 N -0.71 -21.34 5.35 -447.41 -2.40 -23.73 16 13 C 0.12 4.96 4.40 46.75 0.21 5.16 16 14 C 0.15 7.71 7.33 86.44 0.63 8.35 16 15 N -0.64 -33.46 3.70 -716.79 -2.65 -36.12 16 16 C -0.23 -13.38 10.70 84.03 0.90 -12.48 16 17 H 0.09 4.86 7.83 -2.91 -0.02 4.83 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 19 N -0.96 -59.97 11.39 21.65 0.25 -59.72 16 20 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 C 0.12 4.77 8.69 86.49 0.75 5.53 16 25 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.01 6.10 -2.39 -0.01 0.99 16 28 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.04 6.77 -2.39 -0.02 1.02 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 0.95 6.45 -2.39 -0.02 0.93 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 1.27 8.05 -2.39 -0.02 1.26 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.41 9.33 8.71 -92.71 -0.81 8.52 16 39 H 0.09 3.86 7.51 -2.39 -0.02 3.84 16 40 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 1.71 7.17 -2.38 -0.02 1.69 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -76.12 344.31 -0.39 -76.51 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.17 Total: 18.00 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 5.84 Total: 16.11 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -8.39 Total: -135.52 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.12 -0.39 -76.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030300751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.876 kcal (2) G-P(sol) polarization free energy of solvation -76.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds