Wall clock time and date at job start Tue Mar 31 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 H 1.09001 * 110.45989 * 56.75551 * 3 2 1 5 5 C 1.54380 * 110.41115 * 294.34182 * 3 2 1 6 6 H 1.08998 * 110.41103 * 336.30651 * 5 3 2 7 7 C 1.50702 * 110.32184 * 98.47192 * 5 3 2 8 8 O 1.21277 * 120.00102 * 357.08824 * 7 5 3 9 9 N 1.34777 * 119.99799 * 177.09339 * 7 5 3 10 10 C 1.46505 * 119.99891 * 179.97438 * 9 7 5 11 11 C 1.53948 * 113.74015 * 108.32531 * 10 9 7 12 12 N 1.47575 * 86.11606 * 90.73797 * 11 10 9 13 13 C 1.36938 * 134.49074 * 204.63578 * 12 11 10 14 14 H 1.07998 * 120.00331 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99828 * 0.02562 * 13 12 11 16 16 N 1.31618 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47086 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47284 * 119.99742 * 17 15 13 20 20 H 1.48499 * 109.47234 * 239.99866 * 17 15 13 21 21 C 1.47573 * 91.01788 * 24.63745 * 12 11 10 22 22 C 1.54259 * 105.05978 * 217.36682 * 5 3 2 23 23 C 1.54376 * 105.06133 * 359.97438 * 22 5 3 24 24 N 1.48557 * 110.41278 * 179.16593 * 3 2 1 25 25 C 1.46902 * 111.00503 * 277.81869 * 24 3 2 26 26 H 1.09001 * 109.47542 * 305.68038 * 1 2 3 27 27 H 1.08997 * 109.47269 * 65.68000 * 1 2 3 28 28 H 1.08998 * 109.47449 * 185.68139 * 1 2 3 29 29 H 1.09001 * 109.47698 * 240.00284 * 2 1 3 30 30 H 1.09001 * 109.47123 * 119.99842 * 2 1 3 31 31 H 0.97000 * 120.00033 * 359.97438 * 9 7 5 32 32 H 1.09003 * 113.01670 * 336.65877 * 10 9 7 33 33 H 1.08999 * 113.76273 * 205.03981 * 11 10 9 34 34 H 1.08999 * 113.76887 * 336.43006 * 11 10 9 35 35 H 0.96999 * 119.99957 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.76886 * 221.05678 * 21 12 11 37 37 H 1.09003 * 113.87161 * 89.67283 * 21 12 11 38 38 H 1.09000 * 110.32339 * 118.89961 * 22 5 3 39 39 H 1.09007 * 110.32453 * 241.00270 * 22 5 3 40 40 H 1.09005 * 110.40839 * 142.63174 * 23 22 5 41 41 H 1.08994 * 110.41508 * 265.07237 * 23 22 5 42 42 H 1.09003 * 109.47041 * 300.21171 * 25 24 3 43 43 H 1.09000 * 109.46818 * 60.20962 * 25 24 3 44 44 H 1.08997 * 109.47332 * 180.20982 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6391 1.9884 0.8541 5 6 1.6572 2.1489 -1.3182 6 1 1.4965 1.4165 -2.1093 7 6 0.4200 2.9869 -1.1229 8 8 -0.1498 2.9866 -0.0523 9 7 -0.0533 3.7367 -2.1379 10 6 -1.2563 4.5509 -1.9482 11 6 -0.9770 6.0634 -1.8822 12 7 -1.1800 6.0629 -3.3439 13 6 -0.7617 6.8660 -4.3712 14 1 -1.0574 6.6432 -5.3857 15 6 0.0434 7.9659 -4.1086 16 7 0.4043 8.2372 -2.8723 17 14 0.6147 9.0611 -5.5099 18 1 0.0762 8.5438 -6.7935 19 1 0.1238 10.4450 -5.2885 20 1 2.0988 9.0647 -5.5620 21 6 -2.0149 4.8494 -3.2540 22 6 2.8647 3.0471 -1.6569 23 6 3.8752 2.8083 -0.5145 24 7 3.5252 1.4669 0.0203 25 6 4.0361 1.2956 1.3869 26 1 -0.3634 0.5994 0.8347 27 1 -0.3634 0.4232 -0.9364 28 1 -0.3634 -1.0226 0.1017 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.4026 3.7372 -2.9941 32 1 -1.8947 4.1870 -1.1431 33 1 -1.7325 6.6261 -1.3339 34 1 0.0410 6.3094 -1.5800 35 1 0.9666 9.0060 -2.6888 36 1 -1.8257 4.1262 -4.0473 37 1 -3.0758 5.0536 -3.1089 38 1 3.2978 2.7543 -2.6134 39 1 2.5622 4.0940 -1.6837 40 1 4.8941 2.8086 -0.9020 41 1 3.7614 3.5680 0.2586 42 1 3.6616 2.1013 2.0184 43 1 3.6999 0.3374 1.7830 44 1 5.1256 1.3211 1.3734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030339101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:24 Heat of formation + Delta-G solvation = 19.080791 kcal Electronic energy + Delta-G solvation = -23224.482666 eV Core-core repulsion = 19985.361524 eV Total energy + Delta-G solvation = -3239.121142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32633 -38.56406 -37.16480 -33.58462 -33.23656 -32.37363 -31.49873 -28.07110 -27.44038 -25.92971 -24.82965 -23.62172 -22.89049 -21.52105 -20.58031 -19.45077 -19.23910 -17.05028 -16.75889 -15.85276 -15.72162 -14.93454 -14.81987 -14.62930 -14.26978 -14.17049 -13.81379 -13.39159 -13.24710 -12.89827 -12.69592 -12.55759 -12.36500 -11.81391 -11.69172 -11.56367 -11.35859 -11.26665 -11.10128 -11.06848 -10.91175 -10.67156 -10.56196 -10.46556 -10.25646 -9.84369 -9.52809 -9.39539 -8.86719 -8.56465 -8.36196 -6.93284 -5.79957 -3.13619 2.99197 3.35292 3.41075 3.43613 3.50799 4.01770 4.41594 4.47947 4.66019 4.95430 5.10557 5.10980 5.21101 5.23821 5.35344 5.38383 5.40774 5.45146 5.55071 5.58408 5.62430 5.68651 5.76343 5.86592 5.97115 6.05785 6.07152 6.09444 6.11818 6.23261 6.24301 6.39312 6.43427 6.50503 6.77975 6.83497 6.95929 7.20037 7.33054 7.57426 7.93563 8.04622 8.65895 9.00506 9.66975 10.55113 11.36312 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.004553 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.085044 B = 6147.954885 C = 6956.213481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.076 3.924 4 H 0.075 0.925 5 C -0.108 4.108 6 H 0.103 0.897 7 C 0.520 3.480 8 O -0.548 6.548 9 N -0.691 5.691 10 C 0.090 3.910 11 C 0.151 3.849 12 N -0.610 5.610 13 C -0.226 4.226 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.109 3.891 22 C -0.119 4.119 23 C 0.033 3.967 24 N -0.515 5.515 25 C 0.014 3.986 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.404 0.596 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.253 0.747 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.029 0.971 43 H 0.068 0.932 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -15.244 5.021 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.033 4.033 4 H 0.092 0.908 5 C -0.131 4.131 6 H 0.121 0.879 7 C 0.305 3.695 8 O -0.426 6.426 9 N -0.340 5.340 10 C -0.016 4.016 11 C 0.024 3.976 12 N -0.337 5.337 13 C -0.353 4.353 14 H 0.098 0.902 15 C -0.202 4.202 16 N -0.565 5.565 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C -0.017 4.017 22 C -0.158 4.158 23 C -0.094 4.094 24 N -0.238 5.238 25 C -0.135 4.135 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.238 0.762 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.697 -15.398 5.324 16.956 hybrid contribution 0.123 1.594 -0.685 1.739 sum 4.820 -13.805 4.639 15.340 Atomic orbital electron populations 1.21741 0.95132 1.00865 1.02774 1.21390 0.95750 0.94865 1.02067 1.22627 0.87349 0.96528 0.96781 0.90757 1.22059 0.93539 0.97773 0.99678 0.87859 1.20326 0.85318 0.79727 0.84119 1.90639 1.59911 1.66202 1.25831 1.45520 1.28754 1.44696 1.15015 1.22844 0.86537 0.93811 0.98437 1.22697 1.00994 0.88690 0.85187 1.46111 1.55429 1.29222 1.02962 1.19061 1.24702 1.04920 0.86631 0.90244 1.24776 1.00552 0.98431 0.96477 1.69841 1.40000 1.29382 1.17320 0.86087 0.78204 0.80566 0.81123 1.20473 1.21768 1.21718 1.22924 0.94699 0.89912 0.94207 1.22347 0.93923 1.00284 0.99202 1.23106 0.99732 0.89775 0.96833 1.65351 1.09121 1.28723 1.20618 1.22499 1.00626 1.01164 0.89197 0.91806 0.93012 0.93232 0.91557 0.92182 0.76162 0.89303 0.94871 0.90569 0.93698 0.93519 0.93702 0.90070 0.89956 0.89865 0.93510 0.95247 0.91341 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.71 37.15 0.32 -1.41 16 2 C -0.10 -1.15 5.56 -26.73 -0.15 -1.30 16 3 C 0.08 0.97 1.72 -66.07 -0.11 0.86 16 4 H 0.07 1.14 6.76 -51.93 -0.35 0.78 16 5 C -0.11 -1.43 2.43 -90.39 -0.22 -1.65 16 6 H 0.10 1.21 7.81 -51.93 -0.41 0.81 16 7 C 0.52 8.49 6.08 -10.98 -0.07 8.42 16 8 O -0.55 -10.40 13.79 5.56 0.08 -10.33 16 9 N -0.69 -11.79 5.23 -55.34 -0.29 -12.08 16 10 C 0.09 1.72 4.43 -70.15 -0.31 1.41 16 11 C 0.15 3.55 7.32 -2.98 -0.02 3.53 16 12 N -0.61 -15.03 3.70 -178.11 -0.66 -15.69 16 13 C -0.23 -6.12 10.70 -15.06 -0.16 -6.28 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 16 N -0.92 -26.86 11.38 55.49 0.63 -26.23 16 17 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.11 2.14 8.69 -2.98 -0.03 2.11 16 22 C -0.12 -1.52 6.57 -25.35 -0.17 -1.69 16 23 C 0.03 0.40 6.49 -2.17 -0.01 0.39 16 24 N -0.51 -6.13 5.34 -230.32 -1.23 -7.36 16 25 C 0.01 0.14 9.45 60.07 0.57 0.71 16 26 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 27 H 0.05 0.65 7.08 -51.93 -0.37 0.28 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 31 H 0.40 6.62 8.73 -40.82 -0.36 6.26 16 32 H 0.09 1.66 7.46 -51.93 -0.39 1.28 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 2.01 7.15 -51.93 -0.37 1.64 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.23 7.65 -51.92 -0.40 0.83 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 42 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 43 H 0.07 0.63 7.36 -51.93 -0.38 0.25 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -30.70 346.10 -9.28 -39.98 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.55 Total: 4.94 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.45 Total: 4.85 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -1.55 Total: -61.35 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.70 -9.28 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030339101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.058 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds