Wall clock time and date at job start Tue Mar 31 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 H 1.09001 * 110.45989 * 56.75551 * 3 2 1 5 5 C 1.54380 * 110.41115 * 294.34182 * 3 2 1 6 6 H 1.08998 * 110.41103 * 336.30651 * 5 3 2 7 7 C 1.50702 * 110.32184 * 98.47192 * 5 3 2 8 8 O 1.21277 * 120.00102 * 357.08824 * 7 5 3 9 9 N 1.34777 * 119.99799 * 177.09339 * 7 5 3 10 10 C 1.46505 * 119.99891 * 179.97438 * 9 7 5 11 11 C 1.53948 * 113.74015 * 108.32531 * 10 9 7 12 12 N 1.47575 * 86.11606 * 90.73797 * 11 10 9 13 13 C 1.36938 * 134.49074 * 204.63578 * 12 11 10 14 14 H 1.07998 * 120.00331 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99828 * 0.02562 * 13 12 11 16 16 N 1.31618 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47086 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47284 * 119.99742 * 17 15 13 20 20 H 1.48499 * 109.47234 * 239.99866 * 17 15 13 21 21 C 1.47573 * 91.01788 * 24.63745 * 12 11 10 22 22 C 1.54259 * 105.05978 * 217.36682 * 5 3 2 23 23 C 1.54376 * 105.06133 * 359.97438 * 22 5 3 24 24 N 1.48557 * 110.41278 * 179.16593 * 3 2 1 25 25 C 1.46902 * 111.00503 * 277.81869 * 24 3 2 26 26 H 1.09001 * 109.47542 * 305.68038 * 1 2 3 27 27 H 1.08997 * 109.47269 * 65.68000 * 1 2 3 28 28 H 1.08998 * 109.47449 * 185.68139 * 1 2 3 29 29 H 1.09001 * 109.47698 * 240.00284 * 2 1 3 30 30 H 1.09001 * 109.47123 * 119.99842 * 2 1 3 31 31 H 0.97000 * 120.00033 * 359.97438 * 9 7 5 32 32 H 1.09003 * 113.01670 * 336.65877 * 10 9 7 33 33 H 1.08999 * 113.76273 * 205.03981 * 11 10 9 34 34 H 1.08999 * 113.76887 * 336.43006 * 11 10 9 35 35 H 0.96999 * 119.99957 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.76886 * 221.05678 * 21 12 11 37 37 H 1.09003 * 113.87161 * 89.67283 * 21 12 11 38 38 H 1.09000 * 110.32339 * 118.89961 * 22 5 3 39 39 H 1.09007 * 110.32453 * 241.00270 * 22 5 3 40 40 H 1.09005 * 110.40839 * 142.63174 * 23 22 5 41 41 H 1.08994 * 110.41508 * 265.07237 * 23 22 5 42 42 H 1.09003 * 109.47041 * 300.21171 * 25 24 3 43 43 H 1.09000 * 109.46818 * 60.20962 * 25 24 3 44 44 H 1.08997 * 109.47332 * 180.20982 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6391 1.9884 0.8541 5 6 1.6572 2.1489 -1.3182 6 1 1.4965 1.4165 -2.1093 7 6 0.4200 2.9869 -1.1229 8 8 -0.1498 2.9866 -0.0523 9 7 -0.0533 3.7367 -2.1379 10 6 -1.2563 4.5509 -1.9482 11 6 -0.9770 6.0634 -1.8822 12 7 -1.1800 6.0629 -3.3439 13 6 -0.7617 6.8660 -4.3712 14 1 -1.0574 6.6432 -5.3857 15 6 0.0434 7.9659 -4.1086 16 7 0.4043 8.2372 -2.8723 17 14 0.6147 9.0611 -5.5099 18 1 0.0762 8.5438 -6.7935 19 1 0.1238 10.4450 -5.2885 20 1 2.0988 9.0647 -5.5620 21 6 -2.0149 4.8494 -3.2540 22 6 2.8647 3.0471 -1.6569 23 6 3.8752 2.8083 -0.5145 24 7 3.5252 1.4669 0.0203 25 6 4.0361 1.2956 1.3869 26 1 -0.3634 0.5994 0.8347 27 1 -0.3634 0.4232 -0.9364 28 1 -0.3634 -1.0226 0.1017 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.4026 3.7372 -2.9941 32 1 -1.8947 4.1870 -1.1431 33 1 -1.7325 6.6261 -1.3339 34 1 0.0410 6.3094 -1.5800 35 1 0.9666 9.0060 -2.6888 36 1 -1.8257 4.1262 -4.0473 37 1 -3.0758 5.0536 -3.1089 38 1 3.2978 2.7543 -2.6134 39 1 2.5622 4.0940 -1.6837 40 1 4.8941 2.8086 -0.9020 41 1 3.7614 3.5680 0.2586 42 1 3.6616 2.1013 2.0184 43 1 3.6999 0.3374 1.7830 44 1 5.1256 1.3211 1.3734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030339101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:24 Heat of formation + Delta-G solvation = -2.518832 kcal Electronic energy + Delta-G solvation = -23225.419296 eV Core-core repulsion = 19985.361524 eV Total energy + Delta-G solvation = -3240.057772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57008 -39.99107 -38.61990 -35.02946 -34.32495 -33.95273 -32.90382 -29.61000 -28.82177 -26.95899 -26.58986 -25.10333 -24.22883 -22.65221 -21.73891 -20.89963 -20.58263 -18.76046 -18.26307 -17.16644 -16.93776 -16.82721 -16.06062 -15.74659 -15.67128 -15.32540 -15.21011 -14.74881 -14.54443 -14.48003 -14.08627 -13.70656 -13.35185 -13.34239 -13.19106 -12.83462 -12.78144 -12.53832 -12.43083 -12.34842 -12.12186 -12.04848 -12.01743 -11.70749 -11.62524 -11.44298 -11.38289 -10.98007 -10.68821 -9.90443 -9.54267 -8.94069 -7.89272 -5.23849 1.46325 1.47219 1.57234 1.65481 2.19652 2.47170 3.00705 3.27778 3.41140 3.45942 3.64201 3.81221 3.90813 4.13392 4.17177 4.32085 4.34912 4.43543 4.48522 4.54027 4.58628 4.61287 4.66602 4.73836 4.79109 4.89006 4.90684 4.95020 4.97672 5.09371 5.11456 5.14037 5.17122 5.26120 5.31123 5.47477 5.49693 5.74159 5.81590 5.91836 6.01894 6.65953 6.90940 7.29994 7.61413 8.55240 9.27102 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.004553 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.085044 B = 6147.954885 C = 6956.213481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C 0.077 3.923 4 H 0.045 0.955 5 C -0.102 4.102 6 H 0.127 0.873 7 C 0.520 3.480 8 O -0.575 6.575 9 N -0.690 5.690 10 C 0.114 3.886 11 C 0.145 3.855 12 N -0.632 5.632 13 C -0.229 4.229 14 H 0.089 0.911 15 C -0.065 4.065 16 N -0.954 5.954 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.298 1.298 20 H -0.292 1.292 21 C 0.118 3.882 22 C -0.117 4.117 23 C 0.033 3.967 24 N -0.510 5.510 25 C 0.012 3.988 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.408 0.592 32 H 0.097 0.903 33 H 0.019 0.981 34 H 0.040 0.960 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.080 0.920 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -17.391 3.636 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.032 4.032 4 H 0.063 0.937 5 C -0.123 4.123 6 H 0.145 0.855 7 C 0.307 3.693 8 O -0.455 6.455 9 N -0.339 5.339 10 C 0.007 3.993 11 C 0.018 3.982 12 N -0.360 5.360 13 C -0.358 4.358 14 H 0.106 0.894 15 C -0.258 4.258 16 N -0.604 5.604 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.226 1.226 20 H -0.220 1.220 21 C -0.008 4.008 22 C -0.155 4.155 23 C -0.095 4.095 24 N -0.234 5.234 25 C -0.137 4.137 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.244 0.756 32 H 0.115 0.885 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.099 0.901 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.181 -17.587 3.920 18.749 hybrid contribution -0.066 2.235 -0.197 2.245 sum 5.116 -15.352 3.723 16.604 Atomic orbital electron populations 1.21687 0.95621 1.01512 1.01217 1.21361 0.95165 0.93686 1.03216 1.22589 0.88056 0.97277 0.95268 0.93747 1.22091 0.91817 0.97670 1.00761 0.85516 1.20898 0.85772 0.79341 0.83257 1.90633 1.60920 1.67078 1.26854 1.45498 1.28360 1.44448 1.15560 1.22471 0.87230 0.90963 0.98630 1.22610 0.98488 0.92029 0.85027 1.46376 1.56602 1.30247 1.02743 1.19475 1.23788 1.04809 0.87698 0.89377 1.25582 1.01402 1.00177 0.98625 1.70044 1.41164 1.29765 1.19395 0.85050 0.77308 0.78149 0.79052 1.18643 1.22559 1.21958 1.23064 0.94877 0.88034 0.94788 1.22331 0.94000 0.98534 1.00637 1.23143 1.00521 0.89639 0.96219 1.65415 1.08191 1.28152 1.21609 1.22584 1.01579 1.01384 0.88114 0.94098 0.93973 0.91262 0.90192 0.91132 0.75599 0.88503 0.96355 0.94170 0.94519 0.91177 0.91974 0.87920 0.92726 0.87986 0.95061 0.96312 0.90147 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.71 71.98 0.63 -2.51 16 2 C -0.10 -1.95 5.56 30.59 0.17 -1.78 16 3 C 0.08 1.89 1.72 45.06 0.08 1.97 16 4 H 0.04 1.38 6.76 -2.39 -0.02 1.36 16 5 C -0.10 -2.55 2.43 -10.64 -0.03 -2.58 16 6 H 0.13 2.63 7.81 -2.39 -0.02 2.61 16 7 C 0.52 16.86 6.08 87.66 0.53 17.39 16 8 O -0.57 -22.11 13.79 -3.02 -0.04 -22.15 16 9 N -0.69 -23.19 5.23 -447.39 -2.34 -25.53 16 10 C 0.11 4.32 4.43 46.75 0.21 4.52 16 11 C 0.15 7.05 7.32 86.48 0.63 7.68 16 12 N -0.63 -31.07 3.70 -717.43 -2.65 -33.72 16 13 C -0.23 -12.37 10.70 84.03 0.90 -11.47 16 14 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 15 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 16 N -0.95 -57.48 11.38 21.65 0.25 -57.24 16 17 Si 0.98 44.90 29.55 68.60 2.03 46.92 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 21 C 0.12 4.41 8.69 86.48 0.75 5.16 16 22 C -0.12 -2.87 6.57 31.49 0.21 -2.66 16 23 C 0.03 0.75 6.49 86.44 0.56 1.31 16 24 N -0.51 -11.25 5.34 -882.61 -4.72 -15.97 16 25 C 0.01 0.22 9.45 127.69 1.21 1.43 16 26 H 0.04 1.08 7.66 -2.39 -0.02 1.06 16 27 H 0.04 0.99 7.08 -2.39 -0.02 0.97 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.44 8.07 -2.39 -0.02 1.42 16 30 H 0.07 1.29 7.39 -2.39 -0.02 1.27 16 31 H 0.41 13.00 8.73 -92.71 -0.81 12.19 16 32 H 0.10 3.57 7.46 -2.39 -0.02 3.55 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 2.22 7.15 -2.39 -0.02 2.21 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.65 7.65 -2.38 -0.02 1.64 16 40 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.03 0.81 7.91 -2.39 -0.02 0.79 16 42 H 0.02 0.39 7.97 -2.39 -0.02 0.37 16 43 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.03 346.10 -1.00 -68.03 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.17 Total: 24.35 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 6.31 Total: 15.31 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -9.46 Total: -132.46 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.04 Total: -22.15 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.03 -1.00 -68.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030339101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.509 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds