Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 N 1.46906 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.48533 * 111.00245 * 307.39629 * 4 3 2 6 6 C 1.55092 * 103.28383 * 200.33628 * 5 4 3 7 7 C 1.54598 * 102.84998 * 37.30321 * 6 5 4 8 8 C 1.47897 * 110.99555 * 189.99680 * 4 3 2 9 9 H 1.09000 * 109.91881 * 26.49521 * 8 4 3 10 10 C 1.50704 * 110.08713 * 265.28770 * 8 4 3 11 11 O 1.21277 * 119.99155 * 0.86253 * 10 8 4 12 12 N 1.34770 * 120.00040 * 180.85952 * 10 8 4 13 13 C 1.46508 * 119.99644 * 179.97438 * 12 10 8 14 14 C 1.53944 * 113.74270 * 251.67407 * 13 12 10 15 15 N 1.47577 * 86.11586 * 222.04757 * 14 13 12 16 16 C 1.36939 * 134.48820 * 204.63771 * 15 14 13 17 17 H 1.08007 * 119.99468 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00409 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00161 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00060 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47171 * 59.99753 * 20 18 16 22 22 H 1.48503 * 109.46846 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47144 * 299.99745 * 20 18 16 24 24 C 1.47573 * 91.01520 * 24.64165 * 15 14 13 25 25 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47288 * 299.99875 * 1 2 3 27 27 H 1.09001 * 109.46803 * 60.00138 * 1 2 3 28 28 H 1.09002 * 109.47305 * 239.99572 * 2 1 3 29 29 H 1.08998 * 109.47298 * 119.99845 * 2 1 3 30 30 H 1.08992 * 109.47015 * 59.99958 * 3 2 1 31 31 H 1.09001 * 109.47248 * 299.99589 * 3 2 1 32 32 H 1.09003 * 110.66452 * 318.71648 * 5 4 3 33 33 H 1.08995 * 110.66642 * 81.67547 * 5 4 3 34 34 H 1.09003 * 110.70966 * 278.99320 * 6 5 4 35 35 H 1.09003 * 110.81580 * 155.66412 * 6 5 4 36 36 H 1.09002 * 110.31193 * 219.18658 * 7 6 5 37 37 H 1.09000 * 110.30788 * 97.11602 * 7 6 5 38 38 H 0.96995 * 120.00813 * 0.02562 * 12 10 8 39 39 H 1.09001 * 112.94438 * 23.41235 * 13 12 10 40 40 H 1.09002 * 113.76781 * 336.35362 * 14 13 12 41 41 H 1.09006 * 113.76750 * 107.74682 * 14 13 12 42 42 H 0.97002 * 120.00484 * 180.02562 * 19 18 16 43 43 H 1.09002 * 113.76963 * 221.05098 * 24 15 14 44 44 H 1.09007 * 113.87125 * 89.67240 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0409 0.6005 1.1026 6 6 5.4899 1.1233 1.2830 7 6 5.3378 2.6444 1.0523 8 6 4.0389 2.8023 0.2403 9 1 3.3154 3.3881 0.8074 10 6 4.3334 3.4819 -1.0722 11 8 4.1117 2.9060 -2.1162 12 7 4.8432 4.7294 -1.0856 13 6 5.1301 5.3897 -2.3616 14 6 6.6331 5.5215 -2.6671 15 7 6.3158 6.8843 -3.1362 16 6 6.9018 7.7583 -4.0125 17 1 6.4580 8.7275 -4.1864 18 6 8.0661 7.3987 -4.6772 19 7 8.6072 6.2178 -4.4649 20 14 8.8650 8.5907 -5.8732 21 1 9.2316 9.8391 -5.1572 22 1 10.0867 7.9716 -6.4472 23 1 7.9115 8.9088 -6.9663 24 6 5.1136 6.9269 -2.2814 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.4629 0.7503 2.0145 33 1 4.0410 -0.4514 0.8173 34 1 6.1535 0.6846 0.5378 35 1 5.8522 0.9203 2.2908 36 1 6.1868 3.0280 0.4865 37 1 5.2534 3.1651 2.0062 38 1 5.0209 5.1898 -0.2506 39 1 4.5459 4.9871 -3.1891 40 1 7.2655 5.4983 -1.7796 41 1 6.9811 4.8551 -3.4565 42 1 9.4211 5.9666 -4.9291 43 1 4.2483 7.3828 -2.7627 44 1 5.2977 7.3166 -1.2802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030400409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = 21.746757 kcal Electronic energy + Delta-G solvation = -22474.341575 eV Core-core repulsion = 19235.336038 eV Total energy + Delta-G solvation = -3239.005537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14949 -38.50298 -37.09423 -34.70297 -33.38985 -31.81301 -30.91639 -29.52285 -27.26897 -25.63964 -24.78942 -23.63347 -22.33315 -21.80030 -20.44279 -19.76228 -19.43546 -16.96198 -16.76485 -16.37661 -15.84465 -15.36150 -14.90144 -14.83373 -14.32396 -13.95359 -13.72938 -13.48759 -13.31827 -13.06941 -12.70522 -12.63835 -12.03239 -11.82844 -11.67583 -11.53013 -11.41122 -11.34351 -11.31897 -10.98901 -10.91590 -10.85715 -10.78770 -10.72063 -10.39211 -10.03371 -9.52903 -9.34315 -8.78821 -8.43650 -8.32723 -6.90095 -5.75484 -3.09654 3.03705 3.31619 3.41537 3.45106 3.46698 4.01053 4.43883 4.46973 4.53861 4.74967 4.83449 4.89801 5.03598 5.07795 5.16536 5.23301 5.29049 5.38506 5.47985 5.50199 5.55589 5.57731 5.62983 5.65257 5.72127 5.83452 5.89705 6.02944 6.05190 6.06651 6.09419 6.24750 6.44841 6.58659 6.71829 6.84319 6.92797 7.26356 7.41908 7.59370 7.97989 8.00867 8.71808 9.04576 9.70731 10.57951 11.41048 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.003285 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.279248 B = 8520.924231 C = 8855.076954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.049 3.951 4 N -0.492 5.492 5 C 0.036 3.964 6 C -0.123 4.123 7 C -0.125 4.125 8 C 0.048 3.952 9 H 0.074 0.926 10 C 0.517 3.483 11 O -0.520 6.520 12 N -0.720 5.720 13 C 0.094 3.906 14 C 0.155 3.845 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.112 3.888 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.394 0.606 39 H 0.110 0.890 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.048 0.952 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 -10.694 15.777 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.079 4.079 4 N -0.216 5.216 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.163 4.163 8 C -0.064 4.064 9 H 0.092 0.908 10 C 0.301 3.699 11 O -0.394 6.394 12 N -0.372 5.372 13 C -0.011 4.011 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.354 4.354 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.015 4.015 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.227 0.773 39 H 0.128 0.872 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.797 -11.209 14.225 21.614 hybrid contribution 0.358 1.329 0.664 1.529 sum -11.439 -9.880 14.889 21.217 Atomic orbital electron populations 1.21733 0.95597 1.01680 1.01846 1.21573 0.95595 0.96233 1.02666 1.22364 0.87074 0.97476 1.00937 1.64377 1.07887 1.06392 1.42955 1.23280 0.94867 0.98654 0.92340 1.22514 0.96801 0.94797 1.01984 1.22422 0.96614 0.97626 0.99663 1.22377 0.97895 0.91742 0.94425 0.90820 1.20283 0.77444 0.81476 0.90660 1.90688 1.51284 1.63905 1.33546 1.46129 1.65270 1.15841 1.09925 1.23842 0.99852 0.92135 0.85246 1.22662 0.90232 0.87292 0.96993 1.45662 1.26446 1.15552 1.45676 1.18933 1.05349 0.95948 1.15180 0.90144 1.24818 0.97806 0.97298 1.00381 1.69822 1.21736 1.19683 1.45228 0.86172 0.78724 0.79863 0.80806 1.21166 1.21509 1.20988 1.22877 0.91493 0.92694 0.94476 0.92582 0.92996 0.92456 0.90853 0.92082 0.95064 0.90204 0.93844 0.89698 0.90299 0.90775 0.89878 0.90600 0.77314 0.87233 0.95508 0.90576 0.93483 0.93389 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.13 5.59 -26.73 -0.15 -1.28 16 3 C 0.05 0.54 5.03 -3.82 -0.02 0.52 16 4 N -0.49 -6.14 4.55 -223.84 -1.02 -7.15 16 5 C 0.04 0.35 5.11 -1.81 -0.01 0.34 16 6 C -0.12 -1.15 7.08 -24.79 -0.18 -1.33 16 7 C -0.12 -1.27 6.46 -25.37 -0.16 -1.43 16 8 C 0.05 0.58 2.87 -67.79 -0.19 0.39 16 9 H 0.07 0.76 7.57 -51.93 -0.39 0.37 16 10 C 0.52 8.48 6.99 -10.99 -0.08 8.41 16 11 O -0.52 -10.92 16.07 5.56 0.09 -10.83 16 12 N -0.72 -11.32 5.23 -55.35 -0.29 -11.61 16 13 C 0.09 1.88 4.43 -70.15 -0.31 1.57 16 14 C 0.15 3.77 7.32 -2.98 -0.02 3.75 16 15 N -0.61 -15.83 3.70 -178.11 -0.66 -16.49 16 16 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 17 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.81 11.38 55.49 0.63 -27.18 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C 0.11 2.27 8.69 -2.98 -0.03 2.24 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.50 6.79 -51.93 -0.35 0.14 16 30 H 0.03 0.30 7.81 -51.93 -0.41 -0.10 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.36 8.00 -51.93 -0.42 -0.06 16 33 H 0.08 0.77 7.65 -51.93 -0.40 0.37 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.97 7.63 -51.93 -0.40 0.58 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.39 4.98 8.69 -40.82 -0.35 4.63 16 39 H 0.11 2.41 7.46 -51.93 -0.39 2.02 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 2.12 7.15 -51.93 -0.37 1.75 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.63 8.12 -51.92 -0.42 0.20 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -33.84 351.93 -9.67 -43.51 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.67 Total: 1.59 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.04 Total: 5.49 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.34 Total: -62.43 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.84 -9.67 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030400409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.253 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds