Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 N 1.46906 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.48533 * 111.00245 * 307.39629 * 4 3 2 6 6 C 1.55092 * 103.28383 * 200.33628 * 5 4 3 7 7 C 1.54598 * 102.84998 * 37.30321 * 6 5 4 8 8 C 1.47897 * 110.99555 * 189.99680 * 4 3 2 9 9 H 1.09000 * 109.91881 * 26.49521 * 8 4 3 10 10 C 1.50704 * 110.08713 * 265.28770 * 8 4 3 11 11 O 1.21277 * 119.99155 * 0.86253 * 10 8 4 12 12 N 1.34770 * 120.00040 * 180.85952 * 10 8 4 13 13 C 1.46508 * 119.99644 * 179.97438 * 12 10 8 14 14 C 1.53944 * 113.74270 * 251.67407 * 13 12 10 15 15 N 1.47577 * 86.11586 * 222.04757 * 14 13 12 16 16 C 1.36939 * 134.48820 * 204.63771 * 15 14 13 17 17 H 1.08007 * 119.99468 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00409 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00161 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00060 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47171 * 59.99753 * 20 18 16 22 22 H 1.48503 * 109.46846 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47144 * 299.99745 * 20 18 16 24 24 C 1.47573 * 91.01520 * 24.64165 * 15 14 13 25 25 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47288 * 299.99875 * 1 2 3 27 27 H 1.09001 * 109.46803 * 60.00138 * 1 2 3 28 28 H 1.09002 * 109.47305 * 239.99572 * 2 1 3 29 29 H 1.08998 * 109.47298 * 119.99845 * 2 1 3 30 30 H 1.08992 * 109.47015 * 59.99958 * 3 2 1 31 31 H 1.09001 * 109.47248 * 299.99589 * 3 2 1 32 32 H 1.09003 * 110.66452 * 318.71648 * 5 4 3 33 33 H 1.08995 * 110.66642 * 81.67547 * 5 4 3 34 34 H 1.09003 * 110.70966 * 278.99320 * 6 5 4 35 35 H 1.09003 * 110.81580 * 155.66412 * 6 5 4 36 36 H 1.09002 * 110.31193 * 219.18658 * 7 6 5 37 37 H 1.09000 * 110.30788 * 97.11602 * 7 6 5 38 38 H 0.96995 * 120.00813 * 0.02562 * 12 10 8 39 39 H 1.09001 * 112.94438 * 23.41235 * 13 12 10 40 40 H 1.09002 * 113.76781 * 336.35362 * 14 13 12 41 41 H 1.09006 * 113.76750 * 107.74682 * 14 13 12 42 42 H 0.97002 * 120.00484 * 180.02562 * 19 18 16 43 43 H 1.09002 * 113.76963 * 221.05098 * 24 15 14 44 44 H 1.09007 * 113.87125 * 89.67240 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0409 0.6005 1.1026 6 6 5.4899 1.1233 1.2830 7 6 5.3378 2.6444 1.0523 8 6 4.0389 2.8023 0.2403 9 1 3.3154 3.3881 0.8074 10 6 4.3334 3.4819 -1.0722 11 8 4.1117 2.9060 -2.1162 12 7 4.8432 4.7294 -1.0856 13 6 5.1301 5.3897 -2.3616 14 6 6.6331 5.5215 -2.6671 15 7 6.3158 6.8843 -3.1362 16 6 6.9018 7.7583 -4.0125 17 1 6.4580 8.7275 -4.1864 18 6 8.0661 7.3987 -4.6772 19 7 8.6072 6.2178 -4.4649 20 14 8.8650 8.5907 -5.8732 21 1 9.2316 9.8391 -5.1572 22 1 10.0867 7.9716 -6.4472 23 1 7.9115 8.9088 -6.9663 24 6 5.1136 6.9269 -2.2814 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.4629 0.7503 2.0145 33 1 4.0410 -0.4514 0.8173 34 1 6.1535 0.6846 0.5378 35 1 5.8522 0.9203 2.2908 36 1 6.1868 3.0280 0.4865 37 1 5.2534 3.1651 2.0062 38 1 5.0209 5.1898 -0.2506 39 1 4.5459 4.9871 -3.1891 40 1 7.2655 5.4983 -1.7796 41 1 6.9811 4.8551 -3.4565 42 1 9.4211 5.9666 -4.9291 43 1 4.2483 7.3828 -2.7627 44 1 5.2977 7.3166 -1.2802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030400409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -2.839208 kcal Electronic energy + Delta-G solvation = -22475.407703 eV Core-core repulsion = 19235.336038 eV Total energy + Delta-G solvation = -3240.071665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33804 -39.90562 -38.58122 -35.52350 -35.02248 -33.73185 -31.68885 -30.61632 -29.13322 -26.62143 -26.40646 -25.28284 -23.44547 -22.81128 -21.38094 -21.16119 -20.84767 -18.78976 -18.13388 -17.43904 -17.12491 -16.93187 -16.20951 -15.96051 -15.75237 -15.54689 -14.79378 -14.62539 -14.54939 -14.11593 -13.80341 -13.70656 -13.42580 -13.30903 -13.20678 -12.82772 -12.71604 -12.63235 -12.46826 -12.29835 -12.26750 -12.05311 -11.97506 -11.75665 -11.67231 -11.52991 -11.51585 -10.88912 -10.67353 -9.90047 -9.29844 -8.98324 -7.92477 -5.28365 1.44557 1.49141 1.55254 1.73448 2.09993 2.48572 3.06684 3.25564 3.39332 3.60234 3.66150 3.86248 3.97121 4.03959 4.12147 4.17334 4.30426 4.34604 4.47100 4.52276 4.55627 4.63445 4.73609 4.76347 4.79493 4.87564 4.89854 4.91598 5.04261 5.14551 5.17784 5.19100 5.24693 5.27960 5.32574 5.39649 5.46855 5.72434 5.88008 5.90824 6.12724 6.72463 6.87226 7.42040 7.57279 8.50571 9.24025 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.003285 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.279248 B = 8520.924231 C = 8855.076954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.052 3.948 4 N -0.526 5.526 5 C 0.040 3.960 6 C -0.122 4.122 7 C -0.122 4.122 8 C 0.055 3.945 9 H 0.103 0.897 10 C 0.513 3.487 11 O -0.573 6.573 12 N -0.705 5.705 13 C 0.121 3.879 14 C 0.154 3.846 15 N -0.639 5.639 16 C -0.238 4.238 17 H 0.091 0.909 18 C -0.070 4.070 19 N -0.955 5.955 20 Si 0.984 3.016 21 H -0.272 1.272 22 H -0.296 1.296 23 H -0.276 1.276 24 C 0.123 3.877 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.414 0.586 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.029 0.971 42 H 0.248 0.752 43 H 0.062 0.938 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 -9.980 18.526 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.251 5.251 5 C -0.087 4.087 6 C -0.160 4.160 7 C -0.160 4.160 8 C -0.057 4.057 9 H 0.120 0.880 10 C 0.300 3.700 11 O -0.451 6.451 12 N -0.358 5.358 13 C 0.015 3.985 14 C 0.027 3.973 15 N -0.366 5.366 16 C -0.366 4.366 17 H 0.108 0.892 18 C -0.263 4.263 19 N -0.604 5.604 20 Si 0.812 3.188 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.201 1.201 24 C -0.003 4.003 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.021 -10.475 17.041 23.868 hybrid contribution 0.675 1.059 -0.169 1.268 sum -12.346 -9.416 16.872 22.929 Atomic orbital electron populations 1.21713 0.94474 1.02402 1.01959 1.21534 0.96520 0.95110 1.02407 1.22328 0.86478 0.98404 1.00403 1.64261 1.08834 1.06899 1.45117 1.23319 0.94934 0.98145 0.92282 1.22540 0.96458 0.94060 1.02957 1.22473 0.94512 0.98529 1.00513 1.22363 0.99730 0.91832 0.91752 0.87982 1.21239 0.75881 0.80984 0.91913 1.90669 1.53428 1.65050 1.35961 1.45859 1.64837 1.15918 1.09151 1.23083 0.96117 0.92750 0.86594 1.22533 0.93010 0.86337 0.95404 1.45996 1.28158 1.15838 1.46605 1.19408 1.05327 0.96548 1.15291 0.89166 1.25744 0.98822 0.99077 1.02647 1.70043 1.21984 1.21714 1.46652 0.85070 0.77305 0.77862 0.78587 1.19790 1.22188 1.20144 1.23011 0.89707 0.92448 0.95098 0.91577 0.91787 0.93425 0.92913 0.90480 0.93055 0.93110 0.91422 0.89641 0.92534 0.87884 0.91931 0.87028 0.74948 0.89639 0.95518 0.95282 0.94268 0.91963 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -2.02 5.59 30.59 0.17 -1.85 16 3 C 0.05 1.07 5.03 86.30 0.43 1.50 16 4 N -0.53 -12.47 4.55 -862.09 -3.92 -16.39 16 5 C 0.04 0.66 5.11 86.70 0.44 1.10 16 6 C -0.12 -2.00 7.08 31.85 0.23 -1.78 16 7 C -0.12 -2.16 6.46 31.48 0.20 -1.95 16 8 C 0.06 1.24 2.87 44.32 0.13 1.37 16 9 H 0.10 1.73 7.57 -2.39 -0.02 1.71 16 10 C 0.51 16.72 6.99 87.66 0.61 17.33 16 11 O -0.57 -24.98 16.07 -3.02 -0.05 -25.03 16 12 N -0.70 -21.51 5.23 -447.41 -2.34 -23.85 16 13 C 0.12 4.88 4.43 46.75 0.21 5.09 16 14 C 0.15 7.75 7.32 86.48 0.63 8.39 16 15 N -0.64 -33.55 3.70 -717.43 -2.65 -36.21 16 16 C -0.24 -13.59 10.70 84.03 0.90 -12.69 16 17 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 18 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 19 N -0.96 -59.95 11.38 21.65 0.25 -59.70 16 20 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C 0.12 4.80 8.69 86.48 0.75 5.55 16 25 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.07 6.79 -2.39 -0.02 1.05 16 30 H 0.05 0.84 7.81 -2.39 -0.02 0.82 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 0.82 8.00 -2.39 -0.02 0.80 16 33 H 0.09 1.39 7.65 -2.39 -0.02 1.38 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.38 7.63 -2.39 -0.02 1.36 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.41 9.43 8.69 -92.71 -0.81 8.62 16 39 H 0.09 3.91 7.46 -2.39 -0.02 3.89 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.03 1.71 7.15 -2.38 -0.02 1.70 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 2.26 8.12 -2.38 -0.02 2.24 16 Total: -1.00 -77.21 351.93 -0.64 -77.85 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.16 Total: 17.63 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 5.89 Total: 17.08 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -8.67 Total: -136.15 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.21 -0.64 -77.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030400409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.008 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds