Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 C 1.50699 * 109.47154 * 120.00231 * 2 1 3 5 5 O 1.21279 * 120.00517 * 264.17338 * 4 2 1 6 6 N 1.34777 * 120.00050 * 84.17835 * 4 2 1 7 7 C 1.46503 * 120.00389 * 185.35706 * 6 4 2 8 8 C 1.53487 * 114.21098 * 154.99630 * 7 6 4 9 9 N 1.47062 * 87.98698 * 87.71175 * 8 7 6 10 10 C 1.36943 * 136.06287 * 207.08268 * 9 8 7 11 11 H 1.07999 * 119.99575 * 354.07698 * 10 9 8 12 12 C 1.38808 * 120.00086 * 174.07714 * 10 9 8 13 13 N 1.31623 * 119.99771 * 180.02562 * 12 10 9 14 14 Si 1.86791 * 120.00134 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47263 * 175.22211 * 14 12 10 16 16 H 1.48495 * 109.47471 * 295.22558 * 14 12 10 17 17 H 1.48503 * 109.47211 * 55.22512 * 14 12 10 18 18 C 1.47061 * 87.88484 * 27.34547 * 9 8 7 19 19 N 1.46906 * 109.46998 * 240.00314 * 2 1 3 20 20 C 1.48529 * 110.99751 * 66.89222 * 19 2 1 21 21 C 1.54943 * 103.22675 * 159.72200 * 20 19 2 22 22 C 1.54596 * 102.91781 * 322.57994 * 21 20 19 23 23 C 1.47907 * 110.99748 * 184.28514 * 19 2 1 24 24 H 1.09003 * 109.46766 * 304.31420 * 1 2 3 25 25 H 1.09003 * 109.47430 * 64.31009 * 1 2 3 26 26 H 1.08998 * 109.47489 * 184.31613 * 1 2 3 27 27 H 1.08999 * 109.47497 * 187.00568 * 3 2 1 28 28 H 1.08998 * 109.47578 * 307.00707 * 3 2 1 29 29 H 1.09009 * 109.46908 * 67.00763 * 3 2 1 30 30 H 0.97005 * 119.99910 * 5.34696 * 6 4 2 31 31 H 1.08997 * 113.28082 * 21.92460 * 7 6 4 32 32 H 1.09008 * 113.46532 * 332.93604 * 8 7 6 33 33 H 1.09002 * 113.47158 * 202.49936 * 8 7 6 34 34 H 0.97003 * 119.99689 * 5.04539 * 13 12 10 35 35 H 1.09003 * 113.47300 * 87.43348 * 18 9 8 36 36 H 1.09002 * 113.46807 * 217.87877 * 18 9 8 37 37 H 1.09001 * 110.66752 * 278.15303 * 20 19 2 38 38 H 1.08994 * 110.67398 * 41.28220 * 20 19 2 39 39 H 1.08995 * 110.72441 * 204.22153 * 21 20 19 40 40 H 1.08994 * 110.72298 * 80.93585 * 21 20 19 41 41 H 1.08992 * 110.31059 * 263.04132 * 22 21 20 42 42 H 1.09009 * 110.30449 * 140.87454 * 22 21 20 43 43 H 1.08997 * 109.91843 * 333.50968 * 23 19 2 44 44 H 1.09004 * 109.91356 * 94.60764 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3350 -0.0738 2.2173 6 7 2.1453 -2.0535 1.2342 7 6 2.5207 -2.7536 2.4651 8 6 2.0460 -4.2118 2.5296 9 7 3.2902 -4.5928 1.8445 10 6 3.6916 -5.6133 1.0243 11 1 3.0252 -6.4392 0.8242 12 6 4.9550 -5.5861 0.4499 13 7 5.3406 -6.5667 -0.3389 14 14 6.1080 -4.1579 0.7965 15 1 7.4258 -4.4208 0.1643 16 1 5.5311 -2.9090 0.2373 17 1 6.2838 -4.0083 2.2635 18 6 3.9158 -3.3992 2.4334 19 7 2.0196 -0.6925 -1.1995 20 6 1.6839 0.0705 -2.4288 21 6 2.6850 -0.4828 -3.4740 22 6 3.9718 -0.6919 -2.6432 23 6 3.4945 -0.8022 -1.1832 24 1 -0.3633 0.5794 0.8488 25 1 -0.3634 0.4455 -0.9261 26 1 -0.3634 -1.0247 0.0773 27 1 3.1228 1.4450 -0.1253 28 1 1.5780 1.9913 -0.8206 29 1 1.7826 1.9188 0.9461 30 1 1.9780 -2.5566 0.4219 31 1 2.3177 -2.1772 3.3676 32 1 1.1496 -4.4030 1.9395 33 1 1.9732 -4.6002 3.5455 34 1 4.7174 -7.2706 -0.5776 35 1 4.3361 -3.5733 3.4240 36 1 4.6125 -2.8980 1.7614 37 1 0.6573 -0.1282 -2.7367 38 1 1.8403 1.1380 -2.2739 39 1 2.8530 0.2433 -4.2693 40 1 2.3318 -1.4295 -3.8828 41 1 4.6399 0.1614 -2.7593 42 1 4.4736 -1.6105 -2.9476 43 1 3.9206 0.0077 -0.5911 44 1 3.7907 -1.7639 -0.7642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030782870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = 41.342684 kcal Electronic energy + Delta-G solvation = -24107.829884 eV Core-core repulsion = 20869.674090 eV Total energy + Delta-G solvation = -3238.155794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65267 -38.90547 -37.68623 -34.26832 -33.34153 -32.04719 -29.41279 -28.84684 -27.92259 -27.26166 -25.37467 -24.16828 -22.35639 -21.27274 -20.71176 -19.43412 -19.07253 -17.52428 -17.27755 -16.02605 -15.93880 -15.56636 -15.01426 -14.39822 -14.20269 -14.15175 -13.76628 -13.50242 -13.39976 -13.14870 -12.92566 -12.58256 -12.14104 -12.08933 -11.94883 -11.65107 -11.56426 -11.39250 -11.32293 -11.15139 -11.06882 -10.96119 -10.61175 -10.42139 -10.29812 -9.50910 -9.37657 -9.08218 -8.95846 -8.46189 -8.41106 -7.16871 -6.30362 -3.23775 2.80843 3.39797 3.42408 3.47135 3.65504 3.83700 4.55113 4.58350 4.61372 4.75318 4.85310 4.89851 5.01562 5.06719 5.18283 5.24598 5.42356 5.43225 5.47874 5.57583 5.62520 5.68262 5.71750 5.79548 5.83132 5.89920 5.95527 6.00356 6.03142 6.13456 6.20558 6.20875 6.27610 6.31408 6.33876 6.48311 6.81617 6.85362 7.06773 7.09904 7.97346 8.23273 8.55057 8.97429 9.49832 10.35219 11.21276 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.007240 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.904957 B = 3866.315705 C = 4758.669038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.081 3.919 3 C -0.170 4.170 4 C 0.527 3.473 5 O -0.552 6.552 6 N -0.683 5.683 7 C 0.097 3.903 8 C 0.115 3.885 9 N -0.626 5.626 10 C -0.301 4.301 11 H 0.082 0.918 12 C -0.022 4.022 13 N -0.936 5.936 14 Si 1.075 2.925 15 H -0.298 1.298 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.082 3.918 19 N -0.503 5.503 20 C 0.030 3.970 21 C -0.122 4.122 22 C -0.130 4.130 23 C 0.020 3.980 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.416 0.584 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 15.829 -3.176 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.012 4.012 3 C -0.228 4.228 4 C 0.312 3.688 5 O -0.429 6.429 6 N -0.333 5.333 7 C -0.010 4.010 8 C -0.012 4.012 9 N -0.355 5.355 10 C -0.427 4.427 11 H 0.099 0.901 12 C -0.221 4.221 13 N -0.578 5.578 14 Si 0.909 3.091 15 H -0.226 1.226 16 H -0.220 1.220 17 H -0.220 1.220 18 C -0.044 4.044 19 N -0.229 5.229 20 C -0.097 4.097 21 C -0.160 4.160 22 C -0.168 4.168 23 C -0.107 4.107 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.253 0.747 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.465 16.080 -2.890 17.963 hybrid contribution -1.114 -0.232 0.109 1.143 sum -8.580 15.849 -2.781 18.235 Atomic orbital electron populations 1.21748 0.91353 1.03279 1.02487 1.21396 0.97359 0.92993 0.89476 1.22304 1.01789 0.95493 1.03240 1.20221 0.77239 0.82561 0.88747 1.90659 1.50342 1.66305 1.35643 1.45549 1.67829 1.06210 1.13690 1.22445 0.97521 0.93384 0.87600 1.22692 0.91852 0.90056 0.96646 1.46161 1.07831 1.28077 1.53430 1.20143 1.02345 0.99396 1.20831 0.90076 1.25629 0.96444 1.02767 0.97238 1.70923 1.36840 1.12457 1.37596 0.83644 0.75666 0.74349 0.75442 1.22585 1.22038 1.21964 1.23290 0.95221 0.88530 0.97351 1.65048 1.11495 1.45463 1.00890 1.23346 1.00057 0.96493 0.89844 1.22467 0.94859 1.01562 0.97083 1.22365 0.97669 1.02468 0.94275 1.23129 0.87211 1.03015 0.97386 0.91619 0.91460 0.91236 0.91951 0.91555 0.90562 0.74673 0.88208 0.93137 0.93184 0.92963 0.93159 0.92935 0.89919 0.92806 0.91237 0.90500 0.91734 0.90469 0.93244 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.53 37.16 0.32 -1.10 16 2 C 0.08 1.06 0.63 -132.75 -0.08 0.98 16 3 C -0.17 -2.02 7.28 37.16 0.27 -1.75 16 4 C 0.53 8.78 5.65 -10.99 -0.06 8.72 16 5 O -0.55 -10.61 15.57 5.56 0.09 -10.52 16 6 N -0.68 -11.93 4.74 -53.49 -0.25 -12.18 16 7 C 0.10 1.79 4.58 -67.68 -0.31 1.48 16 8 C 0.11 2.21 8.44 -8.53 -0.07 2.14 16 9 N -0.63 -15.09 3.68 -184.66 -0.68 -15.77 16 10 C -0.30 -8.53 11.09 -15.06 -0.17 -8.70 16 11 H 0.08 2.43 8.05 -52.49 -0.42 2.00 16 12 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 13 N -0.94 -29.35 13.70 55.49 0.76 -28.59 16 14 Si 1.07 27.28 25.01 -169.99 -4.25 23.03 16 15 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 16 H -0.29 -6.93 6.26 56.52 0.35 -6.58 16 17 H -0.29 -7.12 6.52 56.52 0.37 -6.75 16 18 C 0.08 1.79 5.79 -8.38 -0.05 1.74 16 19 N -0.50 -6.63 4.36 -216.18 -0.94 -7.58 16 20 C 0.03 0.31 5.47 -1.90 -0.01 0.30 16 21 C -0.12 -1.28 7.06 -24.87 -0.18 -1.45 16 22 C -0.13 -1.63 6.93 -25.37 -0.18 -1.81 16 23 C 0.02 0.30 5.25 -2.75 -0.01 0.28 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.60 6.95 -51.93 -0.36 0.24 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.80 6.03 -51.93 -0.31 0.49 16 28 H 0.07 0.64 6.36 -51.93 -0.33 0.31 16 29 H 0.08 0.96 7.61 -51.92 -0.40 0.57 16 30 H 0.42 7.47 7.75 -40.82 -0.32 7.16 16 31 H 0.10 1.73 7.51 -51.93 -0.39 1.34 16 32 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 35 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 36 H 0.05 1.22 3.93 -51.93 -0.20 1.01 16 37 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 38 H 0.05 0.51 5.56 -51.93 -0.29 0.22 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.05 0.75 5.62 -51.93 -0.29 0.46 16 44 H 0.09 1.71 7.19 -51.93 -0.37 1.33 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -32.16 331.29 -8.03 -40.19 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.12 Total: 6.34 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.63 Total: 0.08 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.12 Total: -64.11 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 27.28 SS G_CDS: -4.25 Total: 23.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.16 -8.03 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030782870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.530 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds