Wall clock time and date at job start Tue Mar 31 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 C 1.50699 * 109.47154 * 120.00231 * 2 1 3 5 5 O 1.21279 * 120.00517 * 264.17338 * 4 2 1 6 6 N 1.34777 * 120.00050 * 84.17835 * 4 2 1 7 7 C 1.46503 * 120.00389 * 185.35706 * 6 4 2 8 8 C 1.53487 * 114.21098 * 154.99630 * 7 6 4 9 9 N 1.47062 * 87.98698 * 87.71175 * 8 7 6 10 10 C 1.36943 * 136.06287 * 207.08268 * 9 8 7 11 11 H 1.07999 * 119.99575 * 354.07698 * 10 9 8 12 12 C 1.38808 * 120.00086 * 174.07714 * 10 9 8 13 13 N 1.31623 * 119.99771 * 180.02562 * 12 10 9 14 14 Si 1.86791 * 120.00134 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47263 * 175.22211 * 14 12 10 16 16 H 1.48495 * 109.47471 * 295.22558 * 14 12 10 17 17 H 1.48503 * 109.47211 * 55.22512 * 14 12 10 18 18 C 1.47061 * 87.88484 * 27.34547 * 9 8 7 19 19 N 1.46906 * 109.46998 * 240.00314 * 2 1 3 20 20 C 1.48529 * 110.99751 * 66.89222 * 19 2 1 21 21 C 1.54943 * 103.22675 * 159.72200 * 20 19 2 22 22 C 1.54596 * 102.91781 * 322.57994 * 21 20 19 23 23 C 1.47907 * 110.99748 * 184.28514 * 19 2 1 24 24 H 1.09003 * 109.46766 * 304.31420 * 1 2 3 25 25 H 1.09003 * 109.47430 * 64.31009 * 1 2 3 26 26 H 1.08998 * 109.47489 * 184.31613 * 1 2 3 27 27 H 1.08999 * 109.47497 * 187.00568 * 3 2 1 28 28 H 1.08998 * 109.47578 * 307.00707 * 3 2 1 29 29 H 1.09009 * 109.46908 * 67.00763 * 3 2 1 30 30 H 0.97005 * 119.99910 * 5.34696 * 6 4 2 31 31 H 1.08997 * 113.28082 * 21.92460 * 7 6 4 32 32 H 1.09008 * 113.46532 * 332.93604 * 8 7 6 33 33 H 1.09002 * 113.47158 * 202.49936 * 8 7 6 34 34 H 0.97003 * 119.99689 * 5.04539 * 13 12 10 35 35 H 1.09003 * 113.47300 * 87.43348 * 18 9 8 36 36 H 1.09002 * 113.46807 * 217.87877 * 18 9 8 37 37 H 1.09001 * 110.66752 * 278.15303 * 20 19 2 38 38 H 1.08994 * 110.67398 * 41.28220 * 20 19 2 39 39 H 1.08995 * 110.72441 * 204.22153 * 21 20 19 40 40 H 1.08994 * 110.72298 * 80.93585 * 21 20 19 41 41 H 1.08992 * 110.31059 * 263.04132 * 22 21 20 42 42 H 1.09009 * 110.30449 * 140.87454 * 22 21 20 43 43 H 1.08997 * 109.91843 * 333.50968 * 23 19 2 44 44 H 1.09004 * 109.91356 * 94.60764 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3350 -0.0738 2.2173 6 7 2.1453 -2.0535 1.2342 7 6 2.5207 -2.7536 2.4651 8 6 2.0460 -4.2118 2.5296 9 7 3.2902 -4.5928 1.8445 10 6 3.6916 -5.6133 1.0243 11 1 3.0252 -6.4392 0.8242 12 6 4.9550 -5.5861 0.4499 13 7 5.3406 -6.5667 -0.3389 14 14 6.1080 -4.1579 0.7965 15 1 7.4258 -4.4208 0.1643 16 1 5.5311 -2.9090 0.2373 17 1 6.2838 -4.0083 2.2635 18 6 3.9158 -3.3992 2.4334 19 7 2.0196 -0.6925 -1.1995 20 6 1.6839 0.0705 -2.4288 21 6 2.6850 -0.4828 -3.4740 22 6 3.9718 -0.6919 -2.6432 23 6 3.4945 -0.8022 -1.1832 24 1 -0.3633 0.5794 0.8488 25 1 -0.3634 0.4455 -0.9261 26 1 -0.3634 -1.0247 0.0773 27 1 3.1228 1.4450 -0.1253 28 1 1.5780 1.9913 -0.8206 29 1 1.7826 1.9188 0.9461 30 1 1.9780 -2.5566 0.4219 31 1 2.3177 -2.1772 3.3676 32 1 1.1496 -4.4030 1.9395 33 1 1.9732 -4.6002 3.5455 34 1 4.7174 -7.2706 -0.5776 35 1 4.3361 -3.5733 3.4240 36 1 4.6125 -2.8980 1.7614 37 1 0.6573 -0.1282 -2.7367 38 1 1.8403 1.1380 -2.2739 39 1 2.8530 0.2433 -4.2693 40 1 2.3318 -1.4295 -3.8828 41 1 4.6399 0.1614 -2.7593 42 1 4.4736 -1.6105 -2.9476 43 1 3.9206 0.0077 -0.5911 44 1 3.7907 -1.7639 -0.7642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030782870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:52 Heat of formation + Delta-G solvation = 17.165985 kcal Electronic energy + Delta-G solvation = -24108.878264 eV Core-core repulsion = 20869.674090 eV Total energy + Delta-G solvation = -3239.204175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86641 -40.34632 -39.05211 -35.29313 -35.09110 -33.97112 -30.37632 -29.94644 -29.66444 -28.21890 -27.06544 -25.52158 -23.94931 -22.52682 -21.67427 -21.14016 -20.25934 -19.55277 -18.45263 -17.62483 -17.08993 -16.77426 -16.41666 -15.97796 -15.68678 -15.50515 -15.23320 -15.10884 -14.69239 -14.39681 -14.11425 -13.62644 -13.39696 -13.30192 -13.18819 -13.07345 -12.76891 -12.62163 -12.56691 -12.47702 -12.34756 -12.07701 -12.06198 -11.94452 -11.37144 -11.27662 -11.17924 -11.10839 -10.78105 -9.94385 -9.44804 -9.22935 -8.62437 -5.47252 1.33774 1.40845 1.50697 1.61847 2.14832 2.47853 2.84155 2.95134 3.20962 3.47722 3.57816 3.68136 3.86288 3.95370 4.00866 4.04803 4.28123 4.31306 4.33553 4.55263 4.57850 4.59784 4.62112 4.63851 4.73244 4.75019 4.80352 4.86113 4.89275 4.93534 4.96631 5.07047 5.15188 5.17391 5.18884 5.29210 5.32502 5.57424 5.81164 5.92744 5.94663 6.59262 6.69865 7.19307 7.31836 8.25171 8.91798 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.007240 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.904957 B = 3866.315705 C = 4758.669038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.084 3.916 3 C -0.164 4.164 4 C 0.525 3.475 5 O -0.578 6.578 6 N -0.686 5.686 7 C 0.117 3.883 8 C 0.119 3.881 9 N -0.652 5.652 10 C -0.281 4.281 11 H 0.055 0.945 12 C -0.077 4.077 13 N -0.972 5.972 14 Si 1.111 2.889 15 H -0.308 1.308 16 H -0.276 1.276 17 H -0.275 1.275 18 C 0.073 3.927 19 N -0.513 5.513 20 C 0.032 3.968 21 C -0.116 4.116 22 C -0.131 4.131 23 C 0.022 3.978 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.413 0.587 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 18.638 -3.235 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.009 4.009 3 C -0.223 4.223 4 C 0.312 3.688 5 O -0.458 6.458 6 N -0.335 5.335 7 C 0.010 3.990 8 C -0.006 4.006 9 N -0.381 5.381 10 C -0.408 4.408 11 H 0.073 0.927 12 C -0.269 4.269 13 N -0.618 5.618 14 Si 0.941 3.059 15 H -0.237 1.237 16 H -0.204 1.204 17 H -0.202 1.202 18 C -0.053 4.053 19 N -0.239 5.239 20 C -0.095 4.095 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.106 4.106 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.250 0.750 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.150 18.920 -2.923 21.219 hybrid contribution -0.705 -1.120 0.180 1.335 sum -9.855 17.801 -2.743 20.530 Atomic orbital electron populations 1.21761 0.89215 1.03300 1.04139 1.21453 0.98790 0.92961 0.87701 1.22284 1.01178 0.94757 1.04072 1.20923 0.76207 0.82029 0.89670 1.90641 1.51446 1.66628 1.37057 1.45628 1.67927 1.06752 1.13225 1.22250 0.94813 0.93179 0.88801 1.22884 0.90216 0.90263 0.97268 1.46182 1.10560 1.27540 1.53848 1.20007 1.01381 0.99134 1.20318 0.92707 1.26684 0.98495 1.04221 0.97526 1.71007 1.37059 1.13608 1.40134 0.83175 0.73700 0.72783 0.76237 1.23710 1.20357 1.20164 1.23510 0.96915 0.87630 0.97218 1.65020 1.10120 1.46708 1.02036 1.23476 1.00911 0.97017 0.88076 1.22473 0.93439 1.01996 0.97474 1.22378 0.99066 1.02253 0.93249 1.22964 0.88736 1.00340 0.98519 0.91105 0.88848 0.91897 0.93210 0.88544 0.91307 0.75042 0.86285 0.92319 0.90742 0.94308 0.91868 0.94344 0.88082 0.91117 0.88583 0.91380 0.90078 0.92403 0.93751 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.53 71.98 0.61 -1.71 16 2 C 0.08 2.00 0.63 2.78 0.00 2.00 16 3 C -0.16 -3.46 7.28 71.98 0.52 -2.93 16 4 C 0.52 16.69 5.65 87.66 0.50 17.18 16 5 O -0.58 -21.35 15.57 -3.03 -0.05 -21.40 16 6 N -0.69 -23.19 4.74 -441.54 -2.09 -25.28 16 7 C 0.12 4.08 4.58 45.55 0.21 4.29 16 8 C 0.12 4.37 8.44 83.17 0.70 5.07 16 9 N -0.65 -31.06 3.68 -738.13 -2.72 -33.77 16 10 C -0.28 -16.20 11.09 84.03 0.93 -15.27 16 11 H 0.06 3.39 8.05 -2.91 -0.02 3.37 16 12 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 13 N -0.97 -63.10 13.70 21.65 0.30 -62.81 16 14 Si 1.11 56.23 25.01 68.60 1.72 57.95 16 15 H -0.31 -16.00 7.11 99.48 0.71 -15.30 16 16 H -0.28 -13.09 6.26 99.48 0.62 -12.46 16 17 H -0.28 -12.99 6.52 99.48 0.65 -12.35 16 18 C 0.07 3.08 5.79 83.26 0.48 3.57 16 19 N -0.51 -12.52 4.36 -837.86 -3.65 -16.17 16 20 C 0.03 0.54 5.47 86.65 0.47 1.02 16 21 C -0.12 -2.12 7.06 31.80 0.22 -1.90 16 22 C -0.13 -3.16 6.93 31.47 0.22 -2.95 16 23 C 0.02 0.66 5.25 86.45 0.45 1.11 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.24 6.95 -2.39 -0.02 1.22 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.18 6.03 -2.39 -0.01 1.16 16 28 H 0.10 1.43 6.36 -2.39 -0.02 1.41 16 29 H 0.07 1.57 7.61 -2.38 -0.02 1.55 16 30 H 0.41 14.61 7.75 -92.70 -0.72 13.90 16 31 H 0.12 3.80 7.51 -2.39 -0.02 3.79 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.25 16.07 8.73 -92.71 -0.81 15.27 16 35 H 0.06 2.53 8.11 -2.39 -0.02 2.51 16 36 H 0.04 1.75 3.93 -2.39 -0.01 1.74 16 37 H 0.10 1.42 7.61 -2.39 -0.02 1.41 16 38 H 0.07 1.01 5.56 -2.39 -0.01 0.99 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.04 1.32 5.62 -2.39 -0.01 1.30 16 44 H 0.05 1.84 7.19 -2.39 -0.02 1.83 16 Total: -1.00 -71.48 331.29 -0.60 -72.08 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.10 Total: 24.09 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.80 Total: 5.31 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -8.16 Total: -138.03 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 56.23 SS G_CDS: 1.72 Total: 57.95 kcal Total: -71.48 -0.60 -72.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030782870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.246 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds