Wall clock time and date at job start Tue Mar 31 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46844 * 110.99968 * 2 1 4 4 C 1.53032 * 109.52599 * 185.83684 * 3 2 1 5 5 C 1.53117 * 109.28215 * 300.82515 * 4 3 2 6 6 C 1.53002 * 109.52721 * 177.55642 * 5 4 3 7 7 C 1.50700 * 109.46993 * 174.99899 * 6 5 4 8 8 O 1.21280 * 120.00297 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99895 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00166 * 180.02562 * 9 7 6 11 11 C 1.53496 * 114.20781 * 154.99901 * 10 9 7 12 12 N 1.47062 * 87.98485 * 87.52018 * 11 10 9 13 13 C 1.36939 * 136.05593 * 207.08750 * 12 11 10 14 14 H 1.08008 * 119.99868 * 7.82597 * 13 12 11 15 15 C 1.38808 * 120.00203 * 187.82575 * 13 12 11 16 16 N 1.31618 * 119.99998 * 195.17052 * 15 13 12 17 17 Si 1.86797 * 119.99840 * 15.16580 * 15 13 12 18 18 H 1.48503 * 109.47450 * 270.00422 * 17 15 13 19 19 H 1.48503 * 109.47360 * 30.00092 * 17 15 13 20 20 H 1.48498 * 109.47360 * 150.00270 * 17 15 13 21 21 C 1.47059 * 87.88616 * 27.34176 * 12 11 10 22 22 C 1.53116 * 109.16277 * 57.64849 * 5 4 3 23 23 C 1.46849 * 111.00163 * 124.20960 * 2 1 3 24 24 H 1.09002 * 109.47090 * 60.00182 * 1 2 3 25 25 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47652 * 299.99935 * 1 2 3 27 27 H 1.09000 * 109.46219 * 65.82216 * 3 2 1 28 28 H 1.08997 * 109.45826 * 305.84943 * 3 2 1 29 29 H 1.08997 * 109.51177 * 180.87963 * 4 3 2 30 30 H 1.09009 * 109.53411 * 60.78262 * 4 3 2 31 31 H 1.09000 * 109.52420 * 297.68514 * 5 4 3 32 32 H 1.08999 * 109.46894 * 55.00071 * 6 5 4 33 33 H 1.08996 * 109.46790 * 294.99567 * 6 5 4 34 34 H 0.96996 * 119.99820 * 359.97438 * 9 7 6 35 35 H 1.09006 * 113.27838 * 21.93040 * 10 9 7 36 36 H 1.09008 * 113.46447 * 332.73453 * 11 10 9 37 37 H 1.08996 * 113.51824 * 202.31263 * 11 10 9 38 38 H 0.96995 * 120.00365 * 354.90363 * 16 15 13 39 39 H 1.08997 * 113.47135 * 87.43718 * 21 12 11 40 40 H 1.09007 * 113.47198 * 217.88025 * 21 12 11 41 41 H 1.09001 * 109.50392 * 62.28907 * 22 5 4 42 42 H 1.09000 * 109.50880 * 182.41008 * 22 5 4 43 43 H 1.08998 * 109.46068 * 294.18201 * 23 2 1 44 44 H 1.09007 * 109.46028 * 54.14349 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5180 1.3342 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 5.6361 0.4450 0.8405 7 6 6.2394 -0.2323 2.0440 8 8 5.5260 -0.6051 2.9512 9 7 7.5718 -0.4237 2.1122 10 6 8.1583 -1.0826 3.2819 11 6 9.5034 -1.7697 3.0087 12 7 10.1595 -0.4869 3.3032 13 6 11.3261 0.1306 2.9385 14 1 11.9503 -0.3041 2.1717 15 6 11.7063 1.3151 3.5542 16 7 12.6477 2.0627 3.0181 17 14 10.8820 1.8481 5.1434 18 1 9.6944 2.6826 4.8295 19 1 10.4557 0.6477 5.9067 20 1 11.8405 2.6378 5.9576 21 6 9.0144 -0.1617 4.1667 22 6 3.5181 -0.8714 1.0209 23 6 1.9953 -0.7708 1.1337 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7324 1.8608 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9099 2.3512 -0.1310 30 1 3.7819 0.8572 -1.0906 31 1 3.8896 1.0360 1.9560 32 1 6.0519 1.4477 0.7414 33 1 5.8648 -0.1334 -0.0545 34 1 8.1423 -0.1259 1.3865 35 1 7.4460 -1.6973 3.8323 36 1 9.6241 -2.0917 1.9743 37 1 9.7442 -2.5550 3.7252 38 1 13.1270 1.7513 2.2345 39 1 9.1254 -0.5228 5.1892 40 1 8.7185 0.8863 4.1191 41 1 3.7813 -1.3836 0.0954 42 1 3.9098 -1.4303 1.8708 43 1 1.7324 -0.2709 2.0660 44 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031049662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:54 Heat of formation + Delta-G solvation = 17.639128 kcal Electronic energy + Delta-G solvation = -22467.891897 eV Core-core repulsion = 19228.708240 eV Total energy + Delta-G solvation = -3239.183658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09899 -39.04031 -37.85552 -34.50591 -33.42122 -32.15232 -30.95719 -29.56184 -27.76847 -25.62163 -25.31027 -23.31061 -22.92062 -21.94709 -20.26128 -19.73664 -19.45605 -17.48492 -16.89317 -16.01023 -15.75756 -15.42093 -15.20752 -14.93872 -14.73637 -14.15033 -13.99926 -13.67015 -13.51770 -13.27042 -13.14260 -12.72055 -12.56518 -12.35699 -12.12678 -11.80634 -11.63568 -11.38716 -11.27412 -10.96114 -10.75691 -10.60174 -10.51975 -10.37867 -10.16577 -9.77991 -9.48485 -9.25636 -8.77136 -8.54999 -8.47852 -7.23413 -6.34051 -3.27157 2.87140 3.41545 3.42897 3.49906 3.61616 3.73985 4.56703 4.58917 4.66468 4.71212 4.74582 4.90614 5.05315 5.11470 5.14809 5.19820 5.31641 5.36109 5.38122 5.41244 5.48039 5.55550 5.58381 5.66525 5.76230 5.82402 5.90341 5.90812 5.92828 6.01244 6.19709 6.22819 6.29611 6.36130 6.38083 6.48068 6.85360 6.89260 7.02123 7.08555 7.88673 8.19766 8.52274 8.93255 9.46702 10.33187 11.15608 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.003386 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.195857 B = 8267.923274 C = 8505.378749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.071 4.071 6 C -0.137 4.137 7 C 0.513 3.487 8 O -0.549 6.549 9 N -0.696 5.696 10 C 0.100 3.900 11 C 0.108 3.892 12 N -0.624 5.624 13 C -0.307 4.307 14 H 0.082 0.918 15 C -0.022 4.022 16 N -0.931 5.931 17 Si 1.062 2.938 18 H -0.294 1.294 19 H -0.282 1.282 20 H -0.296 1.296 21 C 0.087 3.913 22 C -0.116 4.116 23 C 0.057 3.943 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.407 0.593 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.261 0.739 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.033 0.967 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.819 -4.354 -6.578 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.090 4.090 6 C -0.177 4.177 7 C 0.300 3.700 8 O -0.427 6.427 9 N -0.346 5.346 10 C -0.007 4.007 11 C -0.019 4.019 12 N -0.353 5.353 13 C -0.433 4.433 14 H 0.099 0.901 15 C -0.221 4.221 16 N -0.573 5.573 17 Si 0.894 3.106 18 H -0.222 1.222 19 H -0.208 1.208 20 H -0.223 1.223 21 C -0.040 4.040 22 C -0.153 4.153 23 C -0.070 4.070 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.242 0.758 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.051 0.949 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.982 -3.515 -5.325 22.889 hybrid contribution 0.348 -0.683 -0.598 0.972 sum -21.634 -4.198 -5.923 22.820 Atomic orbital electron populations 1.22343 0.87638 1.01948 1.00438 1.61967 1.07274 1.13869 1.43899 1.22068 0.95701 0.89059 1.00305 1.21670 0.94108 1.00219 0.99134 1.20930 0.92318 0.96899 0.98859 1.21732 0.96568 1.02258 0.97143 1.20648 0.82040 0.78911 0.88367 1.90623 1.60510 1.51516 1.40089 1.45569 1.07019 1.59953 1.22059 1.22411 0.94455 0.95749 0.88045 1.22748 0.89042 0.90803 0.99281 1.46382 1.21006 1.14502 1.53382 1.20134 0.98304 1.06510 1.18369 0.90054 1.25755 0.99419 0.93430 1.03533 1.70908 1.26075 1.35840 1.24488 0.83772 0.74818 0.75564 0.76480 1.22210 1.20824 1.22299 1.23186 0.87255 0.98760 0.94753 1.21768 0.93506 0.96866 1.03189 1.22100 0.96164 0.97758 0.91014 0.91523 0.91472 0.95843 0.94948 0.90896 0.91344 0.90936 0.90658 0.88794 0.88886 0.75835 0.88024 0.93313 0.93438 0.92855 0.92893 0.92796 0.91767 0.89306 0.94908 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.59 60.06 0.58 0.77 16 2 N -0.55 -5.35 4.91 -242.97 -1.19 -6.54 16 3 C 0.06 0.52 5.46 -3.84 -0.02 0.50 16 4 C -0.11 -1.04 5.38 -26.65 -0.14 -1.18 16 5 C -0.07 -0.78 1.90 -90.50 -0.17 -0.95 16 6 C -0.14 -1.53 5.18 -27.88 -0.14 -1.68 16 7 C 0.51 7.68 7.56 -10.98 -0.08 7.59 16 8 O -0.55 -9.63 13.58 5.56 0.08 -9.55 16 9 N -0.70 -11.10 5.40 -53.49 -0.29 -11.39 16 10 C 0.10 1.77 4.61 -67.68 -0.31 1.46 16 11 C 0.11 2.04 8.44 -8.52 -0.07 1.97 16 12 N -0.62 -14.83 3.62 -184.65 -0.67 -15.50 16 13 C -0.31 -8.61 11.03 -15.06 -0.17 -8.77 16 14 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 15 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 16 N -0.93 -29.04 13.70 55.49 0.76 -28.28 16 17 Si 1.06 26.77 25.50 -169.99 -4.34 22.44 16 18 H -0.29 -7.21 6.97 56.52 0.39 -6.82 16 19 H -0.28 -6.64 5.66 56.52 0.32 -6.32 16 20 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 21 C 0.09 1.85 5.43 -8.39 -0.05 1.80 16 22 C -0.12 -1.30 5.09 -26.65 -0.14 -1.44 16 23 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.41 6.27 8.76 -40.82 -0.36 5.91 16 35 H 0.10 1.70 7.45 -51.93 -0.39 1.32 16 36 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 39 H 0.05 1.11 7.02 -51.93 -0.36 0.74 16 40 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.18 6.04 -51.93 -0.31 0.87 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.69 8.09 -51.92 -0.42 0.27 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -32.42 341.21 -9.08 -41.50 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.74 Total: 2.29 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.84 Total: -0.11 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -1.39 Total: -61.71 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -4.34 Total: 22.44 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.42 -9.08 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031049662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.138 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds