Wall clock time and date at job start Tue Mar 31 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.00804 * 2 1 4 4 C 1.54315 * 109.88445 * 238.88430 * 2 1 3 5 5 C 1.55139 * 103.01962 * 218.30484 * 4 2 1 6 6 C 1.54912 * 101.64877 * 35.65894 * 5 4 2 7 7 H 1.08997 * 110.37556 * 81.86842 * 6 5 4 8 8 C 1.53001 * 110.37384 * 204.09780 * 6 5 4 9 9 N 1.47434 * 109.89030 * 121.11756 * 2 1 3 10 10 C 1.46905 * 111.00066 * 356.14541 * 9 2 1 11 11 C 1.50697 * 109.46972 * 72.86381 * 10 9 2 12 12 O 1.21282 * 120.00247 * 353.12765 * 11 10 9 13 13 N 1.34776 * 120.00010 * 173.13178 * 11 10 9 14 14 C 1.46504 * 120.00314 * 180.02562 * 13 11 10 15 15 C 1.53944 * 113.73728 * 253.74330 * 14 13 11 16 16 N 1.47817 * 86.03459 * 222.07853 * 15 14 13 17 17 C 1.36939 * 134.46186 * 204.64291 * 16 15 14 18 18 H 1.08001 * 120.00093 * 184.82160 * 17 16 15 19 19 C 1.38810 * 119.99536 * 4.82909 * 17 16 15 20 20 N 1.31620 * 120.00279 * 5.05535 * 19 17 16 21 21 Si 1.86799 * 119.99801 * 185.05885 * 19 17 16 22 22 H 1.48497 * 109.47219 * 94.99702 * 21 19 17 23 23 H 1.48501 * 109.47084 * 214.99772 * 21 19 17 24 24 H 1.48501 * 109.47295 * 334.99583 * 21 19 17 25 25 C 1.47585 * 91.04760 * 24.54934 * 16 15 14 26 26 H 1.09004 * 109.47047 * 173.64695 * 1 2 3 27 27 H 1.08999 * 109.46788 * 293.64330 * 1 2 3 28 28 H 1.08992 * 109.47027 * 53.64242 * 1 2 3 29 29 H 1.09000 * 110.70963 * 336.69682 * 4 2 1 30 30 H 1.09007 * 110.70125 * 99.92777 * 4 2 1 31 31 H 1.09004 * 110.99097 * 153.74617 * 5 4 2 32 32 H 1.08994 * 110.99604 * 277.56800 * 5 4 2 33 33 H 1.09004 * 109.46685 * 63.54032 * 8 6 5 34 34 H 1.08995 * 109.47239 * 183.53777 * 8 6 5 35 35 H 1.09000 * 109.47243 * 303.54429 * 8 6 5 36 36 H 1.09004 * 109.47094 * 192.86391 * 10 9 2 37 37 H 1.09002 * 109.47130 * 312.86457 * 10 9 2 38 38 H 0.97002 * 119.99784 * 359.97438 * 13 11 10 39 39 H 1.09003 * 112.94119 * 25.33023 * 14 13 11 40 40 H 1.08994 * 113.76980 * 336.34029 * 15 14 13 41 41 H 1.09001 * 113.77106 * 107.74841 * 15 14 13 42 42 H 0.97004 * 120.00085 * 179.97438 * 20 19 17 43 43 H 1.09004 * 113.76835 * 221.15249 * 25 16 15 44 44 H 1.09002 * 113.77403 * 89.75718 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0549 -0.7499 -1.2424 5 6 3.2892 -1.5134 -0.6942 6 6 2.8189 -1.8833 0.7347 7 1 2.1956 -2.7771 0.7096 8 6 4.0237 -2.1010 1.6523 9 7 2.0317 -0.7165 1.1869 10 6 0.9241 -1.1340 2.0569 11 6 0.1858 -2.2803 1.4151 12 8 0.4658 -2.6262 0.2869 13 7 -0.7857 -2.9211 2.0948 14 6 -1.5031 -4.0358 1.4711 15 6 -2.9391 -3.6854 1.0408 16 7 -3.3145 -5.0090 1.5814 17 6 -4.3361 -5.8886 1.3411 18 1 -4.4314 -6.7823 1.9400 19 6 -5.2490 -5.6317 0.3275 20 7 -5.0767 -4.5963 -0.4666 21 14 -6.7222 -6.7556 0.0905 22 1 -7.8949 -6.1919 0.8060 23 1 -7.0322 -6.8665 -1.3576 24 1 -6.4105 -8.1017 0.6345 25 6 -2.1453 -5.0028 2.4821 26 1 -0.3633 -1.0214 -0.1137 27 1 -0.3633 0.4121 0.9414 28 1 -0.3633 0.6092 -0.8276 29 1 1.3055 -1.4471 -1.6169 30 1 2.3513 -0.0464 -2.0205 31 1 3.4882 -2.4084 -1.2837 32 1 4.1658 -0.8664 -0.6615 33 1 4.5802 -1.1686 1.7486 34 1 3.6786 -2.4212 2.6354 35 1 4.6707 -2.8680 1.2267 36 1 1.3197 -1.4513 3.0218 37 1 0.2406 -0.2973 2.2019 38 1 -1.0095 -2.6446 2.9973 39 1 -0.9218 -4.5343 0.6954 40 1 -3.3703 -2.8483 1.5897 41 1 -3.0655 -3.5985 -0.0383 42 1 -5.7145 -4.4170 -1.1752 43 1 -1.6392 -5.9657 2.5516 44 1 -2.3428 -4.5535 3.4554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031430750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:55 Heat of formation + Delta-G solvation = 51.680616 kcal Electronic energy + Delta-G solvation = -23367.346431 eV Core-core repulsion = 20129.638923 eV Total energy + Delta-G solvation = -3237.707508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96802 -38.56171 -37.08516 -33.59887 -32.86240 -32.14118 -31.64503 -28.10892 -27.74752 -26.22272 -24.86974 -23.71291 -22.99854 -20.85324 -20.59846 -19.75506 -19.03125 -17.08923 -16.82789 -16.23903 -15.99006 -15.61187 -14.94059 -14.54952 -14.33101 -13.86058 -13.59309 -13.24862 -12.97971 -12.83441 -12.77843 -12.28034 -11.96511 -11.61491 -11.56220 -11.54406 -11.46380 -11.32561 -10.97188 -10.91067 -10.76220 -10.61344 -10.53661 -10.49263 -10.12576 -10.00349 -9.77639 -9.58930 -8.86698 -8.51184 -8.04373 -6.94820 -5.80523 -3.16424 2.78741 3.36177 3.40280 3.44061 3.51096 3.92576 4.42192 4.73163 4.76566 4.92333 5.08768 5.16452 5.26872 5.30415 5.39149 5.44394 5.47173 5.52945 5.59276 5.60552 5.74415 5.78734 5.87419 5.94522 5.96752 6.03611 6.16514 6.17510 6.20098 6.32164 6.36474 6.46689 6.51010 6.55678 6.75479 7.02065 7.06297 7.19685 7.32348 7.52984 7.82515 7.94011 8.47643 8.98237 9.65297 10.51365 11.34656 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030669 B = 0.003857 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.749245 B = 7256.936421 C = 7570.100333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.077 3.923 3 H 0.077 0.923 4 C -0.130 4.130 5 C -0.116 4.116 6 C 0.043 3.957 7 H 0.098 0.902 8 C -0.135 4.135 9 N -0.500 5.500 10 C 0.018 3.982 11 C 0.483 3.517 12 O -0.532 6.532 13 N -0.713 5.713 14 C 0.092 3.908 15 C 0.147 3.853 16 N -0.606 5.606 17 C -0.227 4.227 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.112 3.888 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.396 0.604 39 H 0.109 0.891 40 H 0.025 0.975 41 H 0.083 0.917 42 H 0.255 0.745 43 H 0.048 0.952 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.490 9.090 4.805 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.168 4.168 5 C -0.154 4.154 6 C -0.064 4.064 7 H 0.115 0.885 8 C -0.193 4.193 9 N -0.223 5.223 10 C -0.114 4.114 11 C 0.269 3.731 12 O -0.412 6.412 13 N -0.364 5.364 14 C -0.013 4.013 15 C 0.021 3.979 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.563 5.563 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.015 4.015 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.230 0.770 39 H 0.127 0.873 40 H 0.042 0.958 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.719 9.043 4.115 18.596 hybrid contribution -1.662 -0.819 -0.017 1.853 sum 14.057 8.224 4.098 16.793 Atomic orbital electron populations 1.22969 0.95743 1.05475 1.01419 1.22243 0.94145 0.97484 0.89170 0.90498 1.22792 0.97990 0.99117 0.96934 1.22569 0.97435 0.99833 0.95548 1.23101 0.94786 0.94957 0.93540 0.88510 1.21739 0.97389 1.01180 0.99020 1.64014 1.18575 1.22482 1.17211 1.22602 0.94249 0.96498 0.98061 1.21706 0.80076 0.84567 0.86746 1.90618 1.65170 1.66903 1.18460 1.46362 1.36765 1.34685 1.18556 1.23878 0.93364 0.87008 0.97018 1.22803 0.86808 0.87488 1.00806 1.45663 1.27032 1.17583 1.43004 1.18991 1.02460 1.00768 1.13232 0.90107 1.24814 0.99540 0.98380 0.97483 1.69831 1.37052 1.29283 1.20096 0.86078 0.82553 0.79787 0.77204 1.21585 1.21577 1.20461 1.22878 0.88429 0.96703 0.93479 0.88837 0.92594 0.92649 0.89952 0.92074 0.91371 0.91757 0.92476 0.93276 0.92726 0.88481 0.87153 0.77026 0.87291 0.95755 0.89846 0.93540 0.93364 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 7.71 37.16 0.29 -2.31 16 2 C 0.08 0.95 3.72 -66.73 -0.25 0.71 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.64 5.94 -24.91 -0.15 -1.79 16 5 C -0.12 -1.38 6.50 -24.59 -0.16 -1.54 16 6 C 0.04 0.54 2.41 -66.19 -0.16 0.38 16 7 H 0.10 1.46 4.70 -52.06 -0.24 1.22 16 8 C -0.14 -1.42 9.59 37.16 0.36 -1.06 16 9 N -0.50 -6.04 5.06 -216.95 -1.10 -7.14 16 10 C 0.02 0.20 5.59 -4.97 -0.03 0.17 16 11 C 0.48 6.87 5.27 -10.99 -0.06 6.81 16 12 O -0.53 -9.20 9.29 5.56 0.05 -9.14 16 13 N -0.71 -10.21 5.37 -55.34 -0.30 -10.51 16 14 C 0.09 1.74 4.40 -70.15 -0.31 1.43 16 15 C 0.15 3.46 7.53 -2.84 -0.02 3.44 16 16 N -0.61 -15.41 3.70 -177.88 -0.66 -16.07 16 17 C -0.23 -6.36 10.69 -15.06 -0.16 -6.52 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -27.30 11.29 55.49 0.63 -26.67 16 21 Si 0.91 22.08 29.56 -169.99 -5.02 17.05 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.11 2.20 8.69 -2.97 -0.03 2.17 16 26 H 0.09 1.50 4.13 -51.93 -0.21 1.29 16 27 H 0.06 0.65 5.94 -51.93 -0.31 0.34 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.25 6.80 -51.93 -0.35 0.89 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.10 5.73 -51.93 -0.30 0.80 16 38 H 0.40 4.54 8.71 -40.82 -0.36 4.19 16 39 H 0.11 2.27 7.51 -51.93 -0.39 1.88 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 2.26 6.87 -51.93 -0.36 1.90 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -31.27 333.24 -9.28 -40.55 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.13 Total: 5.25 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.77 Total: 1.66 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -1.43 Total: -60.39 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.05 Total: -9.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.27 -9.28 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031430750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.233 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds