Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.36913 * 2 1 4 4 C 1.54380 * 110.50834 * 237.58746 * 2 1 3 5 5 C 1.54264 * 105.05944 * 217.31469 * 4 2 1 6 6 C 1.54383 * 105.06044 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.40838 * 265.07436 * 6 5 4 8 8 C 1.52997 * 110.41226 * 142.62932 * 6 5 4 9 9 N 1.48554 * 110.41568 * 122.35443 * 2 1 3 10 10 C 1.46901 * 111.00182 * 277.93953 * 9 2 1 11 11 C 1.50703 * 109.46746 * 299.86706 * 10 9 2 12 12 O 1.21284 * 120.00047 * 5.86828 * 11 10 9 13 13 N 1.34772 * 120.00115 * 185.86394 * 11 10 9 14 14 C 1.46497 * 120.00239 * 180.02562 * 13 11 10 15 15 C 1.53500 * 114.20737 * 205.00271 * 14 13 11 16 16 N 1.47067 * 87.98435 * 220.34479 * 15 14 13 17 17 C 1.36944 * 136.05516 * 207.08395 * 16 15 14 18 18 H 1.07996 * 119.99669 * 355.84195 * 17 16 15 19 19 C 1.38812 * 119.99864 * 175.83698 * 17 16 15 20 20 N 1.31618 * 119.99799 * 6.14021 * 19 17 16 21 21 Si 1.86790 * 119.99999 * 186.14061 * 19 17 16 22 22 H 1.48500 * 109.47453 * 94.98416 * 21 19 17 23 23 H 1.48499 * 109.47220 * 214.98871 * 21 19 17 24 24 H 1.48499 * 109.47156 * 334.98595 * 21 19 17 25 25 C 1.47065 * 87.88437 * 27.11864 * 16 15 14 26 26 H 1.09001 * 109.46643 * 297.64508 * 1 2 3 27 27 H 1.08999 * 109.47079 * 57.64555 * 1 2 3 28 28 H 1.08997 * 109.47047 * 177.64530 * 1 2 3 29 29 H 1.08997 * 110.32606 * 336.21101 * 4 2 1 30 30 H 1.08999 * 110.32448 * 98.42446 * 4 2 1 31 31 H 1.09003 * 110.32268 * 118.89638 * 5 4 2 32 32 H 1.08996 * 110.32731 * 241.00366 * 5 4 2 33 33 H 1.08994 * 109.47080 * 299.57852 * 8 6 5 34 34 H 1.08999 * 109.47245 * 59.58095 * 8 6 5 35 35 H 1.09004 * 109.47242 * 179.57827 * 8 6 5 36 36 H 1.08997 * 109.47222 * 179.87235 * 10 9 2 37 37 H 1.08997 * 109.46994 * 59.86645 * 10 9 2 38 38 H 0.97005 * 119.99712 * 0.02562 * 13 11 10 39 39 H 1.08996 * 113.41614 * 338.20361 * 14 13 11 40 40 H 1.09003 * 113.46589 * 105.56319 * 15 14 13 41 41 H 1.08999 * 113.46930 * 335.12620 * 15 14 13 42 42 H 0.97005 * 119.99821 * 180.02562 * 20 19 17 43 43 H 1.09002 * 113.46124 * 87.66485 * 25 16 15 44 44 H 1.09002 * 113.46582 * 218.03539 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7750 -1.2207 5 6 3.3210 -1.5161 -0.7032 6 6 3.4298 -1.1270 0.7868 7 1 4.1064 -0.2813 0.9104 8 6 3.9080 -2.3203 1.6164 9 7 2.0482 -0.7451 1.1761 10 6 2.0543 0.1029 2.3756 11 6 2.9369 1.3014 2.1390 12 8 3.4194 1.4922 1.0427 13 7 3.1899 2.1612 3.1455 14 6 4.0473 3.3265 2.9153 15 6 4.7364 3.8603 4.1788 16 7 4.4659 5.2204 3.6889 17 6 5.0388 6.4550 3.8400 18 1 5.8776 6.5828 4.5082 19 6 4.5416 7.5419 3.1343 20 7 3.4472 7.4142 2.4143 21 14 5.4255 9.1859 3.2065 22 1 6.3456 9.3046 2.0469 23 1 4.4290 10.2860 3.1624 24 1 6.2046 9.2740 4.4676 25 6 3.3089 4.6711 2.9661 26 1 -0.3632 0.4768 0.9104 27 1 -0.3633 0.5500 -0.8681 28 1 -0.3633 -1.0268 -0.0422 29 1 1.3275 -1.4888 -1.5757 30 1 2.3438 -0.0834 -2.0177 31 1 3.1911 -2.5937 -0.8042 32 1 4.2071 -1.1896 -1.2474 33 1 3.1943 -3.1385 1.5210 34 1 4.8840 -2.6455 1.2561 35 1 3.9866 -2.0269 2.6633 36 1 2.4361 -0.4678 3.2221 37 1 1.0390 0.4361 2.5902 38 1 2.8042 2.0084 4.0223 39 1 4.7111 3.2134 2.0582 40 1 5.7984 3.6200 4.2285 41 1 4.2051 3.6167 5.0989 42 1 3.0999 8.1737 1.9208 43 1 2.3973 4.6436 3.5632 44 1 3.1564 5.1211 1.9851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031430755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = 33.207079 kcal Electronic energy + Delta-G solvation = -22945.062894 eV Core-core repulsion = 19706.554313 eV Total energy + Delta-G solvation = -3238.508581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58645 -38.68584 -37.26834 -33.62089 -32.59669 -32.42581 -31.77979 -28.46412 -27.75198 -26.04917 -24.66896 -23.80746 -23.10994 -20.84138 -20.29637 -20.07989 -19.40855 -16.95100 -16.72380 -16.17100 -15.60898 -15.20444 -15.10059 -14.83849 -14.61704 -13.88254 -13.74438 -13.30459 -13.17854 -12.79189 -12.66926 -12.22140 -12.11019 -11.82934 -11.73994 -11.52169 -11.46431 -11.37311 -10.97483 -10.97312 -10.83911 -10.77986 -10.60433 -10.54826 -10.24772 -10.12117 -10.02541 -9.52212 -8.82757 -8.40811 -8.15138 -6.98071 -5.83178 -3.16775 2.77110 3.36057 3.40391 3.43744 3.49037 3.91157 4.42118 4.61275 4.74783 4.89493 5.10034 5.16231 5.23624 5.27207 5.40212 5.42793 5.46512 5.48199 5.51103 5.60531 5.64558 5.72074 5.79162 5.92426 5.95957 5.98053 6.04798 6.12659 6.17970 6.18555 6.32699 6.33809 6.39104 6.49322 6.70822 6.91474 6.99150 7.15948 7.30388 7.49467 7.80656 7.91098 8.45595 8.96715 9.63601 10.54620 11.34171 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.003608 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.663125 B = 7758.032562 C = 8071.106600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.039 3.961 3 H 0.092 0.908 4 C -0.114 4.114 5 C -0.114 4.114 6 C 0.040 3.960 7 H 0.087 0.913 8 C -0.136 4.136 9 N -0.482 5.482 10 C 0.020 3.980 11 C 0.480 3.520 12 O -0.538 6.538 13 N -0.710 5.710 14 C 0.086 3.914 15 C 0.111 3.889 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.084 0.916 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.144 3.856 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.397 0.603 39 H 0.114 0.886 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -19.240 -1.686 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 H 0.110 0.890 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.068 4.068 7 H 0.104 0.896 8 C -0.193 4.193 9 N -0.206 5.206 10 C -0.112 4.112 11 C 0.265 3.735 12 O -0.417 6.417 13 N -0.360 5.360 14 C -0.020 4.020 15 C -0.016 4.016 16 N -0.330 5.330 17 C -0.350 4.350 18 H 0.101 0.899 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.017 3.983 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.231 0.769 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.056 -19.187 -2.393 19.756 hybrid contribution 0.574 1.679 0.536 1.854 sum -3.482 -17.508 -1.857 17.947 Atomic orbital electron populations 1.21737 0.94594 1.01696 1.01326 1.23011 0.95014 0.99259 0.89604 0.89038 1.22242 0.97101 0.98669 0.97181 1.22237 0.98030 0.99930 0.94980 1.22976 0.90857 0.98430 0.94555 0.89551 1.21733 1.00478 0.97800 0.99336 1.65659 1.18271 1.34083 1.02539 1.22428 1.00467 0.91759 0.96578 1.21909 0.81965 0.84696 0.84917 1.90609 1.52228 1.75197 1.23666 1.46215 1.50408 1.26063 1.13304 1.23591 0.94306 0.84135 0.99963 1.22708 0.98006 0.86763 0.94133 1.45292 1.29645 1.02308 1.55748 1.18917 1.11145 0.82820 1.22115 0.89874 1.24843 0.97580 0.98184 0.99546 1.69850 1.21551 1.30568 1.34269 0.86058 0.78629 0.83016 0.77785 1.21373 1.21622 1.20497 1.22526 0.90177 0.87282 0.98279 0.93001 0.92479 0.92408 0.91688 0.91643 0.91698 0.91703 0.92215 0.92539 0.93150 0.88043 0.87754 0.76944 0.86764 0.93693 0.94884 0.93497 0.95713 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.37 37.16 0.35 -1.12 16 2 C 0.04 0.49 2.52 -66.07 -0.17 0.32 16 3 H 0.09 1.45 5.20 -51.93 -0.27 1.18 16 4 C -0.11 -1.31 6.55 -25.35 -0.17 -1.48 16 5 C -0.11 -1.28 6.55 -25.34 -0.17 -1.45 16 6 C 0.04 0.48 2.51 -66.08 -0.17 0.32 16 7 H 0.09 1.30 5.14 -51.93 -0.27 1.03 16 8 C -0.14 -1.36 9.31 37.16 0.35 -1.01 16 9 N -0.48 -5.77 5.01 -215.80 -1.08 -6.85 16 10 C 0.02 0.22 5.83 -4.97 -0.03 0.19 16 11 C 0.48 7.01 6.86 -10.99 -0.08 6.94 16 12 O -0.54 -9.73 10.99 5.55 0.06 -9.67 16 13 N -0.71 -10.38 5.39 -53.62 -0.29 -10.67 16 14 C 0.09 1.64 4.61 -67.81 -0.31 1.33 16 15 C 0.11 2.22 8.45 -8.51 -0.07 2.15 16 16 N -0.60 -15.56 3.78 -184.79 -0.70 -16.26 16 17 C -0.22 -6.28 10.74 -15.06 -0.16 -6.44 16 18 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 20 N -0.92 -27.48 11.51 55.49 0.64 -26.84 16 21 Si 0.92 22.14 29.56 -169.99 -5.02 17.11 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.14 3.43 7.25 -8.51 -0.06 3.37 16 26 H 0.05 0.55 7.39 -51.93 -0.38 0.16 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.48 7.67 -51.93 -0.40 0.09 16 36 H 0.10 0.92 7.63 -51.93 -0.40 0.52 16 37 H 0.10 1.02 7.36 -51.93 -0.38 0.64 16 38 H 0.40 4.62 8.76 -40.82 -0.36 4.26 16 39 H 0.11 2.43 7.45 -51.93 -0.39 2.04 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 2.03 7.08 -51.93 -0.37 1.66 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -32.05 342.35 -9.38 -41.44 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.37 Total: 3.68 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.78 Total: 2.89 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -1.43 Total: -60.62 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.06 Total: -9.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.05 -9.38 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031430755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.646 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds