Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.01260 * 2 1 4 4 C 1.54323 * 109.88879 * 121.11284 * 2 1 3 5 5 C 1.55143 * 103.01886 * 141.68956 * 4 2 1 6 6 C 1.54913 * 101.65282 * 324.35067 * 5 4 2 7 7 H 1.09002 * 110.36951 * 278.24329 * 6 5 4 8 8 C 1.52995 * 110.37347 * 155.90045 * 6 5 4 9 9 N 1.47439 * 109.88952 * 238.88401 * 2 1 3 10 10 C 1.46900 * 111.00034 * 3.85454 * 9 2 1 11 11 C 1.50703 * 109.47317 * 168.48393 * 10 9 2 12 12 O 1.21285 * 119.99654 * 341.97567 * 11 10 9 13 13 N 1.34774 * 119.99865 * 161.96960 * 11 10 9 14 14 C 1.46504 * 119.99616 * 179.72716 * 13 11 10 15 15 C 1.53945 * 113.73910 * 251.95285 * 14 13 11 16 16 N 1.47587 * 86.11660 * 222.05057 * 15 14 13 17 17 C 1.36935 * 134.49290 * 204.64763 * 16 15 14 18 18 H 1.08003 * 120.00111 * 173.87445 * 17 16 15 19 19 C 1.38807 * 119.99813 * 353.86841 * 17 16 15 20 20 N 1.31623 * 120.00630 * 5.05091 * 19 17 16 21 21 Si 1.86808 * 119.99876 * 185.05001 * 19 17 16 22 22 H 1.48493 * 109.47141 * 94.99065 * 21 19 17 23 23 H 1.48501 * 109.46841 * 214.99156 * 21 19 17 24 24 H 1.48498 * 109.47132 * 334.99015 * 21 19 17 25 25 C 1.47585 * 91.01380 * 24.63887 * 16 15 14 26 26 H 1.09000 * 109.47528 * 175.20494 * 1 2 3 27 27 H 1.09000 * 109.47126 * 295.20777 * 1 2 3 28 28 H 1.09007 * 109.46775 * 55.20114 * 1 2 3 29 29 H 1.09002 * 110.69948 * 23.31080 * 4 2 1 30 30 H 1.08994 * 110.70920 * 260.07407 * 4 2 1 31 31 H 1.08995 * 110.99016 * 206.26346 * 5 4 2 32 32 H 1.09000 * 110.99154 * 82.43752 * 5 4 2 33 33 H 1.09007 * 109.47110 * 291.88974 * 8 6 5 34 34 H 1.08997 * 109.47562 * 51.88557 * 8 6 5 35 35 H 1.08999 * 109.47242 * 171.88999 * 8 6 5 36 36 H 1.08999 * 109.46747 * 48.48497 * 10 9 2 37 37 H 1.08995 * 109.47173 * 288.48615 * 10 9 2 38 38 H 0.96998 * 119.99905 * 0.02562 * 13 11 10 39 39 H 1.08997 * 112.94507 * 23.68687 * 14 13 11 40 40 H 1.08997 * 113.77096 * 336.34447 * 15 14 13 41 41 H 1.08997 * 113.77387 * 107.74880 * 15 14 13 42 42 H 0.96991 * 120.00283 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.77204 * 221.06242 * 25 16 15 44 44 H 1.08995 * 113.76558 * 89.66447 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7499 1.2424 5 6 3.2892 -1.5134 0.6942 6 6 2.8189 -1.8833 -0.7348 7 1 2.1939 -2.7759 -0.7094 8 6 4.0236 -2.1010 -1.6524 9 7 2.0316 -0.7165 -1.1870 10 6 0.9240 -1.1339 -2.0570 11 6 1.4734 -1.6039 -3.3793 12 8 2.5997 -1.2995 -3.7105 13 7 0.7132 -2.3624 -4.1936 14 6 1.2452 -2.8142 -5.4816 15 6 0.6171 -2.1046 -6.6948 16 7 0.5894 -3.4355 -7.3321 17 6 0.5786 -3.8792 -8.6275 18 1 0.6568 -4.9358 -8.8371 19 6 0.4670 -2.9710 -9.6713 20 7 0.4717 -1.6785 -9.4225 21 14 0.3102 -3.5831 -11.4292 22 1 -1.1252 -3.6504 -11.8038 23 1 1.0170 -2.6501 -12.3431 24 1 0.9141 -4.9353 -11.5383 25 6 0.5781 -4.0961 -6.0124 26 1 -0.3634 -1.0240 -0.0859 27 1 -0.3633 0.4377 0.9298 28 1 -0.3633 0.5865 -0.8440 29 1 1.3055 -1.4471 1.6169 30 1 2.3513 -0.0465 2.0205 31 1 3.4880 -2.4084 1.2836 32 1 4.1658 -0.8664 0.6614 33 1 4.5337 -1.1512 -1.8138 34 1 4.7110 -2.8081 -1.1881 35 1 3.6846 -2.4985 -2.6090 36 1 0.2533 -0.2905 -2.2213 37 1 0.3754 -1.9471 -1.5818 38 1 -0.1877 -2.6055 -3.9287 39 1 2.3345 -2.8446 -5.5043 40 1 -0.3720 -1.6910 -6.4984 41 1 1.2859 -1.3969 -7.1847 42 1 0.3941 -1.0439 -10.1519 43 1 1.2158 -4.9783 -5.9572 44 1 -0.4224 -4.2675 -5.6154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031430756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = 33.994951 kcal Electronic energy + Delta-G solvation = -22747.035268 eV Core-core repulsion = 19508.560852 eV Total energy + Delta-G solvation = -3238.474416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30072 -38.85669 -37.29408 -33.52003 -32.99011 -32.13989 -31.68471 -28.30891 -27.70035 -26.32854 -24.80416 -24.01714 -22.94072 -21.07189 -20.51212 -19.66931 -19.00538 -17.14597 -16.76321 -16.22394 -15.63701 -15.46861 -15.22542 -14.82036 -14.24748 -13.82951 -13.78764 -13.30935 -12.92458 -12.85306 -12.74548 -12.57188 -12.26806 -11.89281 -11.72189 -11.47715 -11.44583 -11.38185 -11.30768 -10.91382 -10.86117 -10.82740 -10.77972 -10.58016 -10.23706 -10.01236 -9.52278 -9.29139 -8.79956 -8.35452 -8.30092 -6.90178 -5.78211 -3.11391 3.01323 3.35164 3.40228 3.45192 3.47118 3.94574 4.40838 4.45844 4.49898 4.64463 5.00350 5.00599 5.05747 5.13286 5.20427 5.23250 5.29469 5.33593 5.42354 5.48551 5.55674 5.62924 5.68986 5.71197 5.79802 5.88506 5.98446 6.03688 6.10197 6.23137 6.26499 6.43846 6.57497 6.64541 6.84297 6.92077 6.99312 7.25310 7.40308 7.58154 7.96267 7.99183 8.69984 9.03096 9.69180 10.57065 11.38917 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.003250 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.927140 B = 8614.259133 C = 8841.797106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.126 4.126 6 C 0.072 3.928 7 H 0.048 0.952 8 C -0.136 4.136 9 N -0.501 5.501 10 C 0.029 3.971 11 C 0.504 3.496 12 O -0.515 6.515 13 N -0.720 5.720 14 C 0.094 3.906 15 C 0.156 3.844 16 N -0.607 5.607 17 C -0.227 4.227 18 H 0.082 0.918 19 C -0.005 4.005 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.111 3.889 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.394 0.606 39 H 0.110 0.890 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.255 0.745 43 H 0.048 0.952 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 1.063 22.833 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.039 4.039 3 H 0.106 0.894 4 C -0.177 4.177 5 C -0.164 4.164 6 C -0.036 4.036 7 H 0.066 0.934 8 C -0.193 4.193 9 N -0.226 5.226 10 C -0.102 4.102 11 C 0.289 3.711 12 O -0.390 6.390 13 N -0.372 5.372 14 C -0.011 4.011 15 C 0.030 3.970 16 N -0.334 5.334 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.016 4.016 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.227 0.773 39 H 0.128 0.872 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.170 1.653 21.917 22.011 hybrid contribution -1.413 -0.891 -0.428 1.724 sum -0.243 0.762 21.489 21.504 Atomic orbital electron populations 1.22423 0.95903 1.02213 1.02512 1.22464 0.93728 0.99043 0.88669 0.89427 1.22876 0.97810 0.99402 0.97618 1.22763 0.98126 1.00218 0.95266 1.22633 0.95658 0.91305 0.94012 0.93374 1.21874 0.95889 1.01796 0.99744 1.63398 1.20311 1.23395 1.15495 1.22320 0.94214 1.01049 0.92653 1.20469 0.86152 0.78718 0.85787 1.90671 1.18550 1.54982 1.74759 1.46158 1.17647 1.53230 1.20200 1.23841 0.99858 0.96563 0.80805 1.22617 0.97179 0.90120 0.87098 1.45664 1.86012 1.02240 0.99445 1.18985 1.44035 0.92519 0.79892 0.90053 1.24849 1.01975 0.95342 0.98073 1.69848 1.55507 0.99974 1.30901 0.86101 0.77635 0.77742 0.84306 1.21600 1.21623 1.20485 1.22882 0.96901 0.94736 0.87068 0.92259 0.92014 0.91594 0.91464 0.90832 0.91043 0.90476 0.91746 0.93861 0.90690 0.87429 0.92573 0.77324 0.87231 0.95345 0.90942 0.93527 0.93425 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 7.81 37.16 0.29 -0.99 16 2 C 0.07 0.63 4.02 -66.73 -0.27 0.36 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.14 -1.07 6.47 -24.90 -0.16 -1.24 16 5 C -0.13 -1.12 6.50 -24.59 -0.16 -1.28 16 6 C 0.07 0.82 2.82 -66.19 -0.19 0.63 16 7 H 0.05 0.54 7.60 -51.93 -0.39 0.15 16 8 C -0.14 -1.81 8.28 37.15 0.31 -1.50 16 9 N -0.50 -5.99 4.53 -216.95 -0.98 -6.97 16 10 C 0.03 0.34 4.16 -4.97 -0.02 0.31 16 11 C 0.50 7.83 7.03 -10.99 -0.08 7.75 16 12 O -0.51 -9.98 12.67 5.55 0.07 -9.91 16 13 N -0.72 -10.98 5.36 -55.33 -0.30 -11.27 16 14 C 0.09 1.84 4.43 -70.14 -0.31 1.53 16 15 C 0.16 3.78 7.24 -2.97 -0.02 3.76 16 16 N -0.61 -15.73 3.70 -178.08 -0.66 -16.39 16 17 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 18 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -27.66 11.50 55.49 0.64 -27.02 16 21 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.11 2.23 8.69 -2.97 -0.03 2.21 16 26 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.50 6.68 -51.92 -0.35 0.16 16 29 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.21 5.48 -51.93 -0.28 0.93 16 36 H 0.11 1.13 6.09 -51.93 -0.32 0.81 16 37 H 0.06 0.53 6.75 -51.93 -0.35 0.18 16 38 H 0.39 4.84 8.73 -40.82 -0.36 4.48 16 39 H 0.11 2.34 7.46 -51.93 -0.39 1.95 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 2.00 7.34 -51.93 -0.38 1.61 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -32.95 340.40 -9.35 -42.30 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.34 Total: 2.16 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.89 Total: 4.70 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -1.30 Total: -61.65 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.95 -9.35 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031430756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.295 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds