Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46901 * 109.47427 * 2 1 4 4 C 1.46845 * 111.00238 * 294.67497 * 3 2 1 5 5 C 1.53036 * 109.52245 * 185.83858 * 4 3 2 6 6 C 1.53116 * 109.27874 * 300.81732 * 5 4 3 7 7 C 1.53119 * 109.16055 * 57.65744 * 6 5 4 8 8 C 1.46850 * 110.99624 * 58.88356 * 3 2 1 9 9 H 1.08999 * 109.46453 * 294.16467 * 8 3 2 10 10 C 1.50698 * 109.46394 * 54.14240 * 8 3 2 11 11 O 1.21289 * 119.99834 * 28.99448 * 10 8 3 12 12 N 1.34778 * 120.00268 * 208.98734 * 10 8 3 13 13 C 1.46500 * 120.00108 * 179.97438 * 12 10 8 14 14 C 1.53946 * 113.74149 * 251.67487 * 13 12 10 15 15 N 1.47579 * 86.11514 * 222.04724 * 14 13 12 16 16 C 1.36931 * 134.49168 * 204.63673 * 15 14 13 17 17 H 1.08009 * 120.00011 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00406 * 0.02562 * 16 15 14 19 19 N 1.31622 * 119.99432 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00330 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46931 * 90.00137 * 20 18 16 22 22 H 1.48500 * 109.46985 * 209.99660 * 20 18 16 23 23 H 1.48496 * 109.47039 * 330.00303 * 20 18 16 24 24 C 1.47586 * 91.01560 * 24.64235 * 15 14 13 25 25 H 1.09002 * 109.46721 * 299.99866 * 1 2 3 26 26 H 1.08998 * 109.47094 * 59.99316 * 1 2 3 27 27 H 1.08992 * 109.47499 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47145 * 240.00361 * 2 1 3 29 29 H 1.09000 * 109.47403 * 120.00245 * 2 1 3 30 30 H 1.08991 * 109.46385 * 65.82064 * 4 3 2 31 31 H 1.09005 * 109.44899 * 305.84473 * 4 3 2 32 32 H 1.09000 * 109.50453 * 180.87535 * 5 4 3 33 33 H 1.09008 * 109.53859 * 60.77768 * 5 4 3 34 34 H 1.09001 * 109.52721 * 177.56333 * 6 5 4 35 35 H 1.09001 * 109.52268 * 297.75346 * 6 5 4 36 36 H 1.09001 * 109.50637 * 62.28588 * 7 6 5 37 37 H 1.09001 * 109.50581 * 182.40787 * 7 6 5 38 38 H 0.96996 * 119.99548 * 359.97438 * 12 10 8 39 39 H 1.08998 * 112.94187 * 23.41595 * 13 12 10 40 40 H 1.09000 * 113.76853 * 336.35102 * 14 13 12 41 41 H 1.09002 * 113.76499 * 107.74995 * 14 13 12 42 42 H 0.97003 * 119.99694 * 180.02562 * 19 18 16 43 43 H 1.08994 * 113.76928 * 221.05572 * 24 15 14 44 44 H 1.08999 * 113.76501 * 89.65842 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6556 2.0720 -1.2457 5 6 2.3035 3.4581 -1.2735 6 6 1.8227 4.2652 -0.0644 7 6 2.1712 3.5048 1.2182 8 6 1.5271 2.1173 1.1737 9 1 0.4441 2.2217 1.1085 10 6 1.8838 1.3578 2.4255 11 8 2.8723 0.6552 2.4476 12 7 1.1046 1.4593 3.5205 13 6 1.4511 0.7205 4.7372 14 6 0.5119 -0.4630 5.0323 15 7 0.5651 -0.0241 6.4403 16 6 0.3815 -0.6453 7.6467 17 1 0.4792 -0.0834 8.5639 18 6 0.0700 -1.9974 7.6910 19 7 -0.0495 -2.6820 6.5733 20 14 -0.1797 -2.8450 9.3368 21 1 -1.6098 -2.7568 9.7271 22 1 0.2154 -4.2720 9.2236 23 1 0.6567 -2.1799 10.3680 24 6 0.8954 1.3533 6.0259 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5720 2.1764 -1.2995 31 1 2.0071 1.4896 -2.0975 32 1 2.0204 3.9738 -2.1911 33 1 3.3879 3.3545 -1.2340 34 1 2.3149 5.2377 -0.0564 35 1 0.7431 4.4028 -0.1243 36 1 3.2534 3.4013 1.2973 37 1 1.7935 4.0538 2.0808 38 1 0.3144 2.0215 3.5029 39 1 2.5098 0.4676 4.7937 40 1 -0.4743 -0.3651 4.5785 41 1 0.9665 -1.4384 4.8587 42 1 -0.2675 -3.6267 6.6042 43 1 1.6560 1.8281 6.6456 44 1 0.0218 1.9847 5.8640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031436796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = 20.329265 kcal Electronic energy + Delta-G solvation = -23080.436804 eV Core-core repulsion = 19841.369800 eV Total energy + Delta-G solvation = -3239.067004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41000 -38.53777 -37.14261 -34.49522 -33.45468 -31.95020 -31.03876 -29.52983 -27.48988 -25.25072 -24.82543 -24.01025 -22.87950 -21.90881 -20.41093 -19.76422 -19.08184 -16.88566 -16.78483 -16.19823 -15.69995 -15.23487 -14.93934 -14.72406 -14.39000 -14.12048 -13.81197 -13.55627 -13.38331 -13.16317 -12.72813 -12.61562 -12.22897 -11.90983 -11.81826 -11.57590 -11.45108 -11.42696 -11.15015 -10.91756 -10.89952 -10.78651 -10.64142 -10.53725 -10.35451 -10.04447 -9.55979 -9.25332 -8.81646 -8.40791 -8.28738 -6.92898 -5.78302 -3.12293 2.91813 3.33519 3.39795 3.44233 3.46193 3.92892 4.44611 4.60157 4.67731 4.74831 4.94930 5.04498 5.09869 5.15298 5.20180 5.23118 5.30121 5.44170 5.47425 5.51559 5.55822 5.59006 5.63619 5.74087 5.87901 5.91838 5.95488 6.02320 6.04063 6.16870 6.22036 6.26586 6.41364 6.55976 6.78285 6.93645 7.04688 7.22779 7.37436 7.55556 7.92227 7.96065 8.61790 9.02028 9.68200 10.54953 11.38373 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033835 B = 0.003721 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.354520 B = 7523.532113 C = 8023.966128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 N -0.513 5.513 4 C 0.054 3.946 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.069 3.931 9 H 0.059 0.941 10 C 0.515 3.485 11 O -0.524 6.524 12 N -0.717 5.717 13 C 0.093 3.907 14 C 0.155 3.845 15 N -0.606 5.606 16 C -0.226 4.226 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.112 3.888 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.394 0.606 39 H 0.111 0.889 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 13.209 -16.371 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.087 4.087 3 N -0.237 5.237 4 C -0.074 4.074 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.145 4.145 8 C -0.043 4.043 9 H 0.077 0.923 10 C 0.300 3.700 11 O -0.399 6.399 12 N -0.368 5.368 13 C -0.012 4.012 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.354 4.354 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.015 4.015 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.227 0.773 39 H 0.129 0.871 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.115 12.382 -16.090 20.413 hybrid contribution -1.759 -0.240 0.823 1.957 sum 0.356 12.142 -15.267 19.510 Atomic orbital electron populations 1.22439 0.98321 1.02827 1.01499 1.22337 0.92617 0.89443 1.04261 1.61908 1.59368 1.01916 1.00552 1.22127 0.97878 0.95188 0.92171 1.21615 1.01620 0.94657 0.97764 1.21570 1.00932 0.98602 0.94519 1.21539 1.02282 0.92571 0.98137 1.21630 0.98188 0.94460 0.90070 0.92309 1.20331 0.83507 0.81839 0.84372 1.90694 1.26664 1.39275 1.83280 1.46196 1.28441 1.49057 1.13100 1.23878 1.01433 0.94504 0.81380 1.22657 0.94581 0.96428 0.83502 1.45667 1.82242 1.03528 1.01868 1.18988 1.41689 0.91820 0.82854 0.90055 1.24818 1.01795 0.96370 0.97309 1.69833 1.53821 1.07995 1.24846 0.86091 0.77835 0.78935 0.82713 1.21592 1.21546 1.20521 1.22883 0.96469 0.89867 0.92323 0.92541 0.92861 0.91694 0.90658 0.88831 0.94688 0.90530 0.91597 0.90896 0.91422 0.92139 0.90280 0.91023 0.77258 0.87121 0.95572 0.90558 0.93545 0.93274 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 9.22 37.15 0.34 -1.85 16 2 C 0.04 0.53 5.58 -3.83 -0.02 0.51 16 3 N -0.51 -6.38 4.46 -228.08 -1.02 -7.40 16 4 C 0.05 0.52 5.03 -3.84 -0.02 0.50 16 5 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 6 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 7 C -0.11 -1.10 5.36 -26.65 -0.14 -1.25 16 8 C 0.07 0.84 1.64 -68.87 -0.11 0.72 16 9 H 0.06 0.65 6.62 -51.93 -0.34 0.31 16 10 C 0.52 8.19 5.89 -10.99 -0.06 8.12 16 11 O -0.52 -10.53 14.76 5.55 0.08 -10.45 16 12 N -0.72 -11.07 5.36 -55.35 -0.30 -11.37 16 13 C 0.09 1.82 4.43 -70.15 -0.31 1.51 16 14 C 0.15 3.72 7.32 -2.98 -0.02 3.70 16 15 N -0.61 -15.65 3.70 -178.10 -0.66 -16.31 16 16 C -0.23 -6.38 10.70 -15.06 -0.16 -6.55 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.58 11.38 55.49 0.63 -26.95 16 20 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.11 2.24 8.69 -2.97 -0.03 2.21 16 25 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 26 H 0.05 0.52 6.66 -51.93 -0.35 0.18 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.09 1.53 6.01 -51.93 -0.31 1.22 16 30 H 0.03 0.32 6.74 -51.93 -0.35 -0.03 16 31 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 4.97 8.73 -40.82 -0.36 4.61 16 39 H 0.11 2.38 7.46 -51.93 -0.39 2.00 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 2.09 7.15 -51.93 -0.37 1.72 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -32.74 341.51 -9.50 -42.24 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.41 Total: 2.76 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.96 Total: 5.09 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -1.34 Total: -62.02 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.74 -9.50 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031436796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.574 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds