Wall clock time and date at job start Tue Mar 31 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46908 * 109.47531 * 2 1 4 4 C 1.46849 * 110.99698 * 72.15619 * 3 2 1 5 5 C 1.53037 * 109.52062 * 174.16232 * 4 3 2 6 6 C 1.53120 * 109.27615 * 59.18355 * 5 4 3 7 7 C 1.53123 * 109.15957 * 302.34184 * 6 5 4 8 8 C 1.46846 * 110.99446 * 307.94947 * 3 2 1 9 9 H 1.09001 * 109.46209 * 65.82282 * 8 3 2 10 10 C 1.50694 * 109.46749 * 305.85320 * 8 3 2 11 11 O 1.21279 * 119.99619 * 330.92069 * 10 8 3 12 12 N 1.34775 * 120.00271 * 150.92455 * 10 8 3 13 13 C 1.46500 * 120.00083 * 180.02562 * 12 10 8 14 14 C 1.53939 * 113.74095 * 251.67169 * 13 12 10 15 15 N 1.47583 * 86.11693 * 222.04638 * 14 13 12 16 16 C 1.36935 * 134.49242 * 204.63931 * 15 14 13 17 17 H 1.07996 * 120.00255 * 181.56280 * 16 15 14 18 18 C 1.38822 * 120.00111 * 1.55574 * 16 15 14 19 19 N 1.31618 * 119.99925 * 352.24677 * 18 16 15 20 20 Si 1.86796 * 119.99808 * 172.24345 * 18 16 15 21 21 H 1.48498 * 109.47276 * 94.96606 * 20 18 16 22 22 H 1.48503 * 109.46696 * 214.96280 * 20 18 16 23 23 H 1.48494 * 109.47250 * 334.95940 * 20 18 16 24 24 C 1.47580 * 91.01213 * 24.64256 * 15 14 13 25 25 H 1.08991 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47089 * 60.00048 * 1 2 3 27 27 H 1.08994 * 109.47370 * 300.00561 * 1 2 3 28 28 H 1.09004 * 109.47499 * 120.00142 * 2 1 3 29 29 H 1.09002 * 109.47530 * 239.99708 * 2 1 3 30 30 H 1.08994 * 109.46108 * 294.18268 * 4 3 2 31 31 H 1.09002 * 109.46221 * 54.15174 * 4 3 2 32 32 H 1.08993 * 109.50318 * 179.12090 * 5 4 3 33 33 H 1.09003 * 109.50308 * 299.20166 * 5 4 3 34 34 H 1.08995 * 109.52599 * 62.24710 * 6 5 4 35 35 H 1.09007 * 109.52255 * 182.37954 * 6 5 4 36 36 H 1.09004 * 109.49982 * 177.59425 * 7 6 5 37 37 H 1.08995 * 109.50365 * 297.67451 * 7 6 5 38 38 H 0.96999 * 120.00049 * 359.97438 * 12 10 8 39 39 H 1.08998 * 112.94293 * 23.40287 * 13 12 10 40 40 H 1.09003 * 113.77070 * 336.35067 * 14 13 12 41 41 H 1.09001 * 113.76996 * 107.74599 * 14 13 12 42 42 H 0.96997 * 120.00322 * 179.97438 * 19 18 16 43 43 H 1.09009 * 113.75983 * 221.05754 * 24 15 14 44 44 H 1.08998 * 113.76998 * 89.66177 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7991 2.0212 1.3050 5 6 2.4491 3.4066 1.3150 6 6 1.8375 4.2599 0.2004 7 6 2.0383 3.5518 -1.1423 8 6 1.4003 2.1621 -1.0811 9 1 0.3316 2.2612 -0.8908 10 6 1.6126 1.4538 -2.3941 11 8 2.5916 0.7562 -2.5553 12 7 0.7148 1.5955 -3.3892 13 6 0.9211 0.9064 -4.6655 14 6 1.3094 1.8460 -5.8215 15 7 0.3777 1.0525 -6.6463 16 6 0.2623 0.7962 -7.9865 17 1 -0.5483 0.1828 -8.3512 18 6 1.1872 1.3250 -8.8765 19 7 2.0825 2.1936 -8.4564 20 14 1.1611 0.8038 -10.6701 21 1 0.3713 1.7832 -11.4587 22 1 2.5508 0.7543 -11.1913 23 1 0.5409 -0.5404 -10.7860 24 6 -0.3797 0.6462 -5.4466 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 0.7286 2.1209 1.4841 31 1 2.2425 1.4064 2.0883 32 1 2.2718 3.8848 2.2782 33 1 3.5220 3.3064 1.1504 34 1 0.7717 4.3927 0.3864 35 1 2.3272 5.2335 0.1766 36 1 1.5675 4.1338 -1.9346 37 1 3.1045 3.4547 -1.3466 38 1 -0.0683 2.1532 -3.2602 39 1 1.5623 0.0296 -4.5762 40 1 0.9942 2.8788 -5.6729 41 1 2.3517 1.7579 -6.1280 42 1 2.7290 2.5628 -9.0782 43 1 -0.6860 -0.3999 -5.4540 44 1 -1.1911 1.3266 -5.1880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031436797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:23 Heat of formation + Delta-G solvation = 20.712112 kcal Electronic energy + Delta-G solvation = -23047.069359 eV Core-core repulsion = 19808.018956 eV Total energy + Delta-G solvation = -3239.050403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43875 -38.54009 -37.13930 -34.51230 -33.46516 -31.95121 -31.03576 -29.59780 -27.49317 -25.30772 -24.82725 -23.93478 -22.91782 -21.95654 -20.41107 -19.74655 -19.10948 -16.89222 -16.77445 -16.21764 -15.67260 -15.35575 -14.89763 -14.69084 -14.43484 -14.14043 -13.84770 -13.52111 -13.39686 -13.17139 -12.71893 -12.66357 -12.27294 -11.93489 -11.89551 -11.56724 -11.45854 -11.39836 -11.16719 -10.92542 -10.90339 -10.77863 -10.65766 -10.54347 -10.38531 -10.05453 -9.56781 -9.25905 -8.75780 -8.42558 -8.30393 -6.93758 -5.79008 -3.11064 2.91871 3.31813 3.40267 3.44943 3.47248 3.90950 4.45182 4.61635 4.68225 4.76057 4.90725 5.02897 5.09357 5.09879 5.13927 5.22147 5.26142 5.37227 5.47129 5.51904 5.53634 5.58773 5.62394 5.77593 5.79262 5.91829 5.95294 6.00550 6.01595 6.13541 6.20889 6.24570 6.41292 6.55255 6.78639 6.89977 7.00931 7.22805 7.38355 7.54700 7.91889 7.95866 8.61527 9.02168 9.68699 10.55561 11.38435 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032926 B = 0.003655 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.189354 B = 7658.338707 C = 8086.649129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.042 3.958 3 N -0.513 5.513 4 C 0.055 3.945 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.109 4.109 8 C 0.070 3.930 9 H 0.059 0.941 10 C 0.515 3.485 11 O -0.524 6.524 12 N -0.717 5.717 13 C 0.093 3.907 14 C 0.156 3.844 15 N -0.606 5.606 16 C -0.228 4.228 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.112 3.888 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.394 0.606 39 H 0.111 0.889 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 2.043 21.237 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.086 4.086 3 N -0.238 5.238 4 C -0.072 4.072 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.042 4.042 9 H 0.077 0.923 10 C 0.300 3.700 11 O -0.399 6.399 12 N -0.368 5.368 13 C -0.012 4.012 14 C 0.029 3.971 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.563 5.563 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.015 4.015 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.227 0.773 39 H 0.128 0.872 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.380 1.522 20.669 20.861 hybrid contribution -1.440 0.226 -0.843 1.684 sum -3.820 1.748 19.826 20.267 Atomic orbital electron populations 1.22454 0.98400 1.02596 1.01661 1.22325 0.92577 0.89708 1.03963 1.61892 1.57919 1.01721 1.02245 1.22129 0.98469 0.95753 0.90898 1.21618 1.01300 0.94435 0.98332 1.21569 1.00768 0.98730 0.94537 1.21555 1.02699 0.92621 0.97854 1.21636 0.97627 0.94466 0.90473 0.92315 1.20316 0.83221 0.81526 0.84952 1.90688 1.28508 1.38916 1.81782 1.46184 1.25592 1.50373 1.14665 1.23842 0.99204 0.97853 0.80259 1.22641 0.97088 0.92554 0.84786 1.45731 1.31016 1.55519 1.01039 1.18984 1.09857 1.26624 0.80043 0.90061 1.24813 0.98257 0.98837 0.98260 1.69847 1.20720 1.31512 1.34262 0.86100 0.77034 0.78175 0.84428 1.21643 1.21490 1.20476 1.22872 0.93308 0.98187 0.87141 0.91893 0.92390 0.92849 0.90790 0.88998 0.94858 0.90558 0.91591 0.90829 0.92192 0.91325 0.90809 0.90142 0.77250 0.87157 0.95349 0.90907 0.93523 0.93299 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 9.10 37.15 0.34 -1.58 16 2 C 0.04 0.49 5.54 -3.82 -0.02 0.47 16 3 N -0.51 -6.19 4.46 -228.08 -1.02 -7.21 16 4 C 0.06 0.51 5.17 -3.83 -0.02 0.49 16 5 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 6 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 7 C -0.11 -1.22 5.36 -26.65 -0.14 -1.36 16 8 C 0.07 0.85 1.60 -68.88 -0.11 0.74 16 9 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 10 C 0.52 8.17 5.50 -10.99 -0.06 8.11 16 11 O -0.52 -10.51 14.75 5.56 0.08 -10.43 16 12 N -0.72 -11.06 5.36 -55.35 -0.30 -11.35 16 13 C 0.09 1.82 4.43 -70.15 -0.31 1.51 16 14 C 0.16 3.75 7.28 -2.98 -0.02 3.73 16 15 N -0.61 -15.67 3.70 -178.10 -0.66 -16.32 16 16 C -0.23 -6.44 10.69 -15.06 -0.16 -6.60 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 19 N -0.92 -27.62 11.48 55.49 0.64 -26.98 16 20 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.11 2.24 8.69 -2.98 -0.03 2.22 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.62 6.03 -51.92 -0.31 0.31 16 27 H 0.05 0.47 6.90 -51.93 -0.36 0.11 16 28 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 29 H 0.09 1.35 6.26 -51.93 -0.32 1.03 16 30 H 0.03 0.29 6.95 -51.93 -0.36 -0.07 16 31 H 0.08 0.64 7.99 -51.93 -0.42 0.23 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.39 4.97 8.73 -40.82 -0.36 4.61 16 39 H 0.11 2.36 7.46 -51.93 -0.39 1.97 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 2.00 7.28 -51.93 -0.38 1.62 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -32.88 341.23 -9.51 -42.39 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.42 Total: 2.36 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.95 Total: 5.16 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.33 Total: -61.87 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.88 -9.51 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031436797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.106 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds