Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47567 * 2 1 4 4 H 1.09000 * 109.47187 * 303.89238 * 3 2 1 5 5 C 1.50696 * 109.47211 * 183.88607 * 3 2 1 6 6 O 1.21277 * 120.00470 * 266.07153 * 5 3 2 7 7 N 1.34784 * 119.99611 * 86.07994 * 5 3 2 8 8 C 1.47870 * 126.94314 * 0.02562 * 7 5 3 9 9 C 1.56023 * 105.09990 * 181.98647 * 8 7 5 10 10 H 1.09003 * 116.24630 * 159.68562 * 9 8 7 11 11 C 1.57078 * 100.42100 * 33.04913 * 9 8 7 12 12 C 1.49290 * 126.94592 * 180.02562 * 7 5 3 13 13 H 1.09007 * 116.14899 * 16.71496 * 12 7 5 14 14 C 1.55958 * 105.03512 * 246.36288 * 12 7 5 15 15 N 1.47862 * 105.13399 * 290.22302 * 14 12 7 16 16 C 1.36936 * 126.94666 * 180.63311 * 15 14 12 17 17 H 1.08010 * 120.00278 * 179.67776 * 16 15 14 18 18 C 1.38813 * 120.00076 * 359.68405 * 16 15 14 19 19 N 1.31622 * 119.99955 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00114 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47365 * 89.99916 * 20 18 16 22 22 H 1.48500 * 109.47156 * 209.99974 * 20 18 16 23 23 H 1.48504 * 109.47413 * 329.99847 * 20 18 16 24 24 N 1.46907 * 109.46736 * 63.89373 * 3 2 1 25 25 C 1.46905 * 110.99662 * 275.11668 * 24 3 2 26 26 C 1.46895 * 111.00298 * 39.06740 * 24 3 2 27 27 H 1.09008 * 109.46768 * 42.05037 * 1 2 3 28 28 H 1.08998 * 109.47501 * 162.04555 * 1 2 3 29 29 H 1.09001 * 109.47270 * 282.05414 * 1 2 3 30 30 H 1.09005 * 109.47379 * 239.99968 * 2 1 3 31 31 H 1.08998 * 109.47122 * 120.00770 * 2 1 3 32 32 H 1.08989 * 110.31581 * 63.07808 * 8 7 5 33 33 H 1.09005 * 110.31315 * 300.88793 * 8 7 5 34 34 H 1.09005 * 112.36440 * 64.06609 * 11 9 8 35 35 H 1.08992 * 112.37040 * 191.50714 * 11 9 8 36 36 H 1.09000 * 111.47435 * 170.69184 * 14 12 7 37 37 H 1.09004 * 109.12646 * 48.54678 * 14 12 7 38 38 H 0.96996 * 119.99954 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.47128 * 62.74118 * 25 24 3 40 40 H 1.09004 * 109.46936 * 182.74247 * 25 24 3 41 41 H 1.09002 * 109.46733 * 302.73661 * 25 24 3 42 42 H 1.09003 * 109.47152 * 55.57953 * 26 24 3 43 43 H 1.08998 * 109.47245 * 175.58160 * 26 24 3 44 44 H 1.09000 * 109.47324 * 295.57891 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6209 1.9761 -0.8530 5 6 3.5439 1.4434 -0.0963 6 8 4.2162 1.4921 0.9119 7 7 4.1419 1.3904 -1.3030 8 6 3.4771 1.3283 -2.6224 9 6 4.6392 1.2325 -3.6590 10 1 4.3776 0.8395 -4.6415 11 6 5.6907 0.4094 -2.8319 12 6 5.6093 1.3826 -1.5778 13 1 6.2549 1.1414 -0.7332 14 6 5.8914 2.7315 -2.3079 15 7 5.2589 2.5907 -3.6370 16 6 5.2488 3.5165 -4.6460 17 1 4.7538 3.2926 -5.5795 18 6 5.8748 4.7428 -4.4691 19 7 6.4785 5.0155 -3.3317 20 14 5.8615 6.0054 -5.8456 21 1 4.6663 6.8758 -5.7076 22 1 7.0902 6.8357 -5.7676 23 1 5.8176 5.3084 -7.1563 24 7 1.6287 2.1072 1.2438 25 6 0.2694 2.6517 1.1249 26 6 1.7310 1.1924 2.3885 27 1 -0.3633 0.7632 -0.6884 28 1 -0.3634 -0.9776 -0.3168 29 1 -0.3634 0.2146 1.0050 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.8907 2.2309 -2.7935 33 1 2.8410 0.4452 -2.6844 34 1 5.3381 -0.5944 -2.5948 35 1 6.6726 0.3967 -3.3049 36 1 6.9611 2.9112 -2.4150 37 1 5.4244 3.5437 -1.7507 38 1 6.9156 5.8725 -3.2080 39 1 -0.4355 1.8365 0.9622 40 1 0.0084 3.1803 2.0417 41 1 0.2271 3.3423 0.2827 42 1 2.7452 0.7973 2.4483 43 1 1.4962 1.7312 3.3064 44 1 1.0276 0.3697 2.2602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032474808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = 43.050128 kcal Electronic energy + Delta-G solvation = -23833.742336 eV Core-core repulsion = 20595.660582 eV Total energy + Delta-G solvation = -3238.081754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25839 -38.83895 -36.79255 -33.62395 -32.39896 -31.39651 -29.25368 -28.55688 -28.00473 -27.47173 -25.14005 -23.57729 -22.91797 -21.67890 -20.02215 -19.68190 -18.34147 -17.24976 -16.54209 -16.13634 -15.49781 -15.37148 -14.88171 -14.33981 -14.28870 -13.88497 -13.38985 -13.14795 -12.93381 -12.60048 -12.32448 -12.10839 -12.02360 -11.75873 -11.70090 -11.62511 -11.54247 -11.28995 -11.25110 -11.00066 -10.90540 -10.82696 -10.76933 -10.52209 -10.19998 -10.03530 -9.61815 -9.26332 -8.68237 -8.08823 -7.91835 -6.90525 -5.74653 -3.09388 3.06749 3.36312 3.38377 3.42702 3.45631 4.15823 4.43239 4.70045 4.79640 4.87039 5.04723 5.21666 5.22627 5.27792 5.30621 5.38214 5.38792 5.48289 5.58230 5.63893 5.64874 5.65990 5.76322 5.82177 5.85259 5.92911 5.95778 6.05565 6.17118 6.20749 6.30466 6.44326 6.51652 6.60294 6.72176 7.02606 7.12553 7.44775 7.54332 7.75007 8.11970 8.19086 8.72705 9.12123 9.73050 10.42471 11.37331 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.004957 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.728034 B = 5647.549197 C = 5919.139944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C 0.072 3.928 4 H 0.097 0.903 5 C 0.539 3.461 6 O -0.542 6.542 7 N -0.606 5.606 8 C 0.085 3.915 9 C 0.139 3.861 10 H 0.104 0.896 11 C -0.151 4.151 12 C 0.099 3.901 13 H 0.112 0.888 14 C 0.175 3.825 15 N -0.597 5.597 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 N -0.523 5.523 25 C 0.009 3.991 26 C 0.020 3.980 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.254 0.746 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 -11.174 5.233 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C -0.040 4.040 4 H 0.115 0.885 5 C 0.327 3.673 6 O -0.420 6.420 7 N -0.340 5.340 8 C -0.041 4.041 9 C 0.030 3.970 10 H 0.121 0.879 11 C -0.191 4.191 12 C -0.004 4.004 13 H 0.130 0.870 14 C 0.049 3.951 15 N -0.322 5.322 16 C -0.360 4.360 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 N -0.246 5.246 25 C -0.139 4.139 26 C -0.128 4.128 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.477 -10.445 5.891 15.924 hybrid contribution -0.632 0.274 -0.868 1.108 sum -11.108 -10.170 5.023 15.877 Atomic orbital electron populations 1.22073 0.95209 1.02009 1.01897 1.22092 0.96512 0.96582 1.03590 1.21682 0.93318 0.94637 0.94348 0.88511 1.19906 0.89236 0.76189 0.82012 1.90606 1.65939 1.50630 1.34779 1.49114 1.08159 1.71593 1.05108 1.23282 0.97142 0.99927 0.83712 1.23162 0.90753 0.87748 0.95295 0.87854 1.24452 1.00902 0.96640 0.97085 1.24534 0.80827 0.98932 0.96106 0.87037 1.21888 0.97871 0.90816 0.84480 1.45240 1.62326 1.11372 1.13227 1.19035 1.30273 0.93596 0.93127 0.90210 1.24820 1.00214 0.97859 0.97333 1.69922 1.39854 1.23147 1.23550 0.86127 0.77117 0.81456 0.81058 1.21641 1.21680 1.20658 1.61746 1.24363 1.36049 1.02449 1.22787 0.88785 0.99639 1.02685 1.22569 1.02723 0.94692 0.92803 0.92138 0.92424 0.92067 0.90902 0.90568 0.91213 0.93066 0.91898 0.89691 0.92481 0.93667 0.93572 0.93986 0.91464 0.91469 0.89783 0.91908 0.95397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.08 37.16 0.30 -1.12 16 2 C -0.15 -1.72 4.86 -26.73 -0.13 -1.85 16 3 C 0.07 1.06 1.88 -68.86 -0.13 0.93 16 4 H 0.10 1.41 6.99 -51.93 -0.36 1.05 16 5 C 0.54 10.10 7.08 -10.98 -0.08 10.02 16 6 O -0.54 -11.80 15.19 5.56 0.08 -11.72 16 7 N -0.61 -11.30 2.99 -155.63 -0.47 -11.77 16 8 C 0.08 1.44 5.68 -1.67 -0.01 1.43 16 9 C 0.14 2.57 5.47 -62.54 -0.34 2.22 16 10 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 11 C -0.15 -2.56 6.93 -21.21 -0.15 -2.70 16 12 C 0.10 1.95 5.26 -61.49 -0.32 1.62 16 13 H 0.11 2.16 8.06 -51.93 -0.42 1.74 16 14 C 0.17 4.25 4.78 -1.71 -0.01 4.24 16 15 N -0.60 -14.38 3.01 -156.37 -0.47 -14.85 16 16 C -0.23 -6.18 10.38 -15.06 -0.16 -6.34 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 19 N -0.92 -27.02 10.56 55.49 0.59 -26.43 16 20 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 N -0.52 -7.62 4.67 -244.58 -1.14 -8.76 16 25 C 0.01 0.10 9.01 60.07 0.54 0.64 16 26 C 0.02 0.26 8.04 60.06 0.48 0.74 16 27 H 0.06 0.54 7.43 -51.92 -0.39 0.16 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.54 4.99 -51.93 -0.26 0.28 16 30 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 31 H 0.08 0.92 6.19 -51.93 -0.32 0.60 16 32 H 0.07 1.30 8.03 -51.94 -0.42 0.89 16 33 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.53 7.47 -51.93 -0.39 1.14 16 37 H 0.05 1.28 7.66 -51.93 -0.40 0.88 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.04 0.40 4.19 -51.93 -0.22 0.18 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.78 7.99 -51.93 -0.41 0.36 16 42 H 0.08 1.28 6.37 -51.93 -0.33 0.95 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.30 5.00 -51.93 -0.26 0.04 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -31.84 330.72 -8.58 -40.43 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.04 Total: 1.79 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.09 Total: 9.59 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -1.49 Total: -61.82 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.84 -8.58 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032474808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.476 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds