Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46731 * 2 1 4 4 H 1.09006 * 109.47034 * 53.83645 * 3 2 1 5 5 C 1.50692 * 109.47260 * 173.83770 * 3 2 1 6 6 O 1.21285 * 120.00170 * 110.03149 * 5 3 2 7 7 N 1.34772 * 120.00348 * 290.03637 * 5 3 2 8 8 C 1.49069 * 127.54085 * 356.66872 * 7 5 3 9 9 C 1.56018 * 105.20931 * 181.97520 * 8 7 5 10 10 H 1.08993 * 116.89553 * 158.53633 * 9 8 7 11 11 C 1.57083 * 99.60354 * 32.13513 * 9 8 7 12 12 C 1.49291 * 126.94827 * 175.40629 * 7 5 3 13 13 H 1.08996 * 116.15073 * 16.74186 * 12 7 5 14 14 C 1.55999 * 105.09275 * 246.85329 * 12 7 5 15 15 N 1.47872 * 105.11617 * 288.92324 * 14 12 7 16 16 C 1.36932 * 126.94443 * 181.87405 * 15 14 12 17 17 H 1.08002 * 120.00103 * 179.69053 * 16 15 14 18 18 C 1.38812 * 119.99941 * 359.69230 * 16 15 14 19 19 N 1.31621 * 120.00431 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47214 * 90.00158 * 20 18 16 22 22 H 1.48506 * 109.46883 * 209.99659 * 20 18 16 23 23 H 1.48491 * 109.47109 * 329.99837 * 20 18 16 24 24 N 1.46906 * 109.47251 * 293.84124 * 3 2 1 25 25 C 1.46895 * 111.00031 * 181.94586 * 24 3 2 26 26 C 1.46902 * 110.99250 * 305.89666 * 24 3 2 27 27 H 1.08998 * 109.47069 * 65.05190 * 1 2 3 28 28 H 1.09007 * 109.46698 * 185.05084 * 1 2 3 29 29 H 1.08994 * 109.47007 * 305.04680 * 1 2 3 30 30 H 1.08997 * 109.47271 * 240.00480 * 2 1 3 31 31 H 1.08996 * 109.46942 * 119.99873 * 2 1 3 32 32 H 1.09007 * 110.82792 * 62.74209 * 8 7 5 33 33 H 1.08995 * 109.70089 * 300.62709 * 8 7 5 34 34 H 1.08998 * 112.37087 * 64.27352 * 11 9 8 35 35 H 1.09007 * 112.36792 * 191.71546 * 11 9 8 36 36 H 1.08998 * 110.41451 * 169.96437 * 14 12 7 37 37 H 1.08996 * 110.20444 * 47.78787 * 14 12 7 38 38 H 0.96993 * 120.00536 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47356 * 66.63691 * 25 24 3 40 40 H 1.09007 * 109.47171 * 186.62997 * 25 24 3 41 41 H 1.09001 * 109.47274 * 306.63257 * 25 24 3 42 42 H 1.09000 * 109.47346 * 66.63744 * 26 24 3 43 43 H 1.09005 * 109.46697 * 186.63630 * 26 24 3 44 44 H 1.08996 * 109.47631 * 306.63395 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5893 1.9872 0.8297 5 6 3.5392 1.4454 0.1525 6 8 4.2430 1.7708 -0.7801 7 7 4.0980 1.0863 1.3252 8 6 3.3993 0.7255 2.5915 9 6 4.5372 0.4504 3.6228 10 1 4.2743 0.5225 4.6781 11 6 5.6168 1.4639 3.0984 12 6 5.5547 0.9419 1.6181 13 1 6.2363 1.4104 0.9081 14 6 5.7685 -0.5820 1.8740 15 7 5.1247 -0.8481 3.1783 16 6 5.0811 -2.0427 3.8462 17 1 4.5810 -2.1096 4.8011 18 6 5.6796 -3.1678 3.2958 19 7 6.2886 -3.0865 2.1318 20 14 5.6207 -4.7973 4.2073 21 1 4.4067 -5.5491 3.7994 22 1 6.8301 -5.5933 3.8767 23 1 5.5786 -4.5451 5.6700 24 7 1.6754 2.0908 -1.2668 25 6 2.1896 3.4657 -1.3217 26 6 2.1481 1.3057 -2.4150 27 1 -0.3633 0.4335 -0.9318 28 1 -0.3633 -1.0238 0.0905 29 1 -0.3633 0.5901 0.8413 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7875 -0.1666 2.4561 33 1 2.7829 1.5614 2.9222 34 1 5.2905 2.5001 3.1869 35 1 6.5935 1.3024 3.5546 36 1 6.8324 -0.8138 1.9230 37 1 5.2889 -1.1665 1.0889 38 1 6.7065 -3.8727 1.7471 39 1 3.2789 3.4452 -1.3556 40 1 1.8078 3.9612 -2.2145 41 1 1.8639 4.0112 -0.4360 42 1 1.6094 0.3589 -2.4542 43 1 1.9700 1.8634 -3.3345 44 1 3.2154 1.1123 -2.3083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032634566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = 36.775746 kcal Electronic energy + Delta-G solvation = -24076.705619 eV Core-core repulsion = 20838.351787 eV Total energy + Delta-G solvation = -3238.353832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43739 -38.83738 -36.16855 -33.83967 -32.87357 -31.39965 -29.20107 -28.61896 -27.47789 -27.12652 -25.23572 -23.61423 -23.07903 -21.49446 -19.99327 -19.74578 -18.42658 -17.33800 -16.53502 -16.06451 -15.44821 -15.06964 -14.88861 -14.59684 -14.13040 -13.79753 -13.42766 -13.31853 -13.05172 -12.43870 -12.13047 -12.10491 -11.75169 -11.73558 -11.67010 -11.50667 -11.45556 -11.26659 -11.03479 -10.89664 -10.87856 -10.64200 -10.61385 -10.58295 -10.24073 -10.10015 -9.91676 -9.66276 -8.76405 -8.03440 -7.92288 -6.96734 -5.80410 -3.15143 2.93787 3.34689 3.38603 3.39731 3.42283 4.06830 4.38665 4.72732 4.95433 5.08647 5.14546 5.16215 5.30104 5.33813 5.51281 5.52599 5.59280 5.63589 5.68240 5.74573 5.75936 5.86809 5.90677 5.97211 6.03944 6.13169 6.19179 6.22297 6.25964 6.31695 6.38351 6.41088 6.51227 6.55945 6.66256 7.01999 7.10168 7.38222 7.44204 7.67700 8.04646 8.08403 8.53922 9.06484 9.67501 10.36405 11.31716 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.005456 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.176264 B = 5131.099192 C = 5594.967410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.072 3.928 4 H 0.100 0.900 5 C 0.503 3.497 6 O -0.556 6.556 7 N -0.603 5.603 8 C 0.084 3.916 9 C 0.140 3.860 10 H 0.107 0.893 11 C -0.152 4.152 12 C 0.094 3.906 13 H 0.110 0.890 14 C 0.176 3.824 15 N -0.597 5.597 16 C -0.232 4.232 17 H 0.081 0.919 18 C -0.005 4.005 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 N -0.515 5.515 25 C 0.009 3.991 26 C 0.003 3.997 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.254 0.746 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 10.139 -2.155 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.041 4.041 4 H 0.117 0.883 5 C 0.291 3.709 6 O -0.437 6.437 7 N -0.336 5.336 8 C -0.041 4.041 9 C 0.031 3.969 10 H 0.125 0.875 11 C -0.191 4.191 12 C -0.009 4.009 13 H 0.128 0.872 14 C 0.051 3.949 15 N -0.321 5.321 16 C -0.360 4.360 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 N -0.238 5.238 25 C -0.139 4.139 26 C -0.145 4.145 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.775 10.080 -2.794 13.653 hybrid contribution 0.872 -0.986 0.435 1.386 sum -7.902 9.094 -2.359 12.276 Atomic orbital electron populations 1.21630 0.94481 1.01098 1.02296 1.21627 0.97077 0.93338 1.03649 1.21884 0.90063 0.97767 0.94350 0.88264 1.21508 0.91343 0.76819 0.81270 1.90558 1.64381 1.50220 1.38530 1.49679 1.08514 1.64784 1.10660 1.23578 0.96755 0.98950 0.84841 1.23177 0.90949 0.87065 0.95705 0.87518 1.24166 1.00945 0.97932 0.96100 1.24296 0.81611 0.99781 0.95195 0.87234 1.21887 0.97969 0.87226 0.87827 1.45240 1.63006 1.03963 1.19894 1.19046 1.30694 0.84691 1.01560 0.90128 1.24815 1.00191 0.98056 0.97120 1.69913 1.40441 1.28737 1.17539 0.86124 0.77146 0.83630 0.78855 1.21581 1.21684 1.20612 1.62539 1.57255 1.02687 1.01290 1.22560 1.00649 0.89154 1.01567 1.22667 1.01446 0.97882 0.92462 0.91926 0.92977 0.92902 0.91178 0.90339 0.90552 0.92831 0.91769 0.89882 0.92695 0.93568 0.93570 0.92519 0.91836 0.92383 0.91764 0.92187 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.75 37.16 0.36 -1.25 16 2 C -0.12 -1.70 4.99 -26.73 -0.13 -1.83 16 3 C 0.07 1.05 1.69 -68.86 -0.12 0.93 16 4 H 0.10 1.33 8.06 -51.93 -0.42 0.92 16 5 C 0.50 8.96 6.48 -10.99 -0.07 8.89 16 6 O -0.56 -11.27 12.04 5.55 0.07 -11.20 16 7 N -0.60 -10.85 3.02 -155.82 -0.47 -11.32 16 8 C 0.08 1.38 5.68 -1.00 -0.01 1.37 16 9 C 0.14 2.52 5.53 -62.55 -0.35 2.18 16 10 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 11 C -0.15 -2.54 6.80 -22.30 -0.15 -2.70 16 12 C 0.09 1.81 5.19 -62.56 -0.32 1.49 16 13 H 0.11 2.09 8.04 -51.93 -0.42 1.68 16 14 C 0.18 4.16 4.79 -1.68 -0.01 4.15 16 15 N -0.60 -13.99 3.02 -156.36 -0.47 -14.46 16 16 C -0.23 -6.04 10.37 -15.06 -0.16 -6.20 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 19 N -0.92 -26.47 10.56 55.49 0.59 -25.89 16 20 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 N -0.52 -7.23 4.66 -244.58 -1.14 -8.37 16 25 C 0.01 0.12 9.07 60.06 0.54 0.66 16 26 C 0.00 0.05 8.62 60.07 0.52 0.56 16 27 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.07 6.12 -51.93 -0.32 0.75 16 31 H 0.08 1.24 5.82 -51.93 -0.30 0.93 16 32 H 0.08 1.36 6.28 -51.93 -0.33 1.03 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.06 1.44 7.48 -51.93 -0.39 1.05 16 37 H 0.05 1.26 7.66 -51.93 -0.40 0.86 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 0.89 5.75 -51.93 -0.30 0.60 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.06 0.86 6.49 -51.93 -0.34 0.52 16 43 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 44 H 0.06 1.09 5.44 -51.93 -0.28 0.81 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -29.83 333.02 -8.66 -38.49 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.24 Total: 3.33 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 0.02 Total: 8.02 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -1.50 Total: -60.04 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.83 -8.66 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032634566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.265 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds