Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99740 * 2 1 4 4 O 1.21280 * 120.00081 * 175.19729 * 3 2 1 5 5 C 1.50703 * 120.00094 * 355.19733 * 3 2 1 6 6 H 1.08999 * 109.87717 * 5.20788 * 5 3 2 7 7 C 1.54322 * 109.88402 * 244.01000 * 5 3 2 8 8 C 1.55149 * 103.01480 * 218.30620 * 7 5 3 9 9 C 1.54907 * 101.65206 * 35.66016 * 8 7 5 10 10 N 1.47445 * 109.88869 * 126.24116 * 5 3 2 11 11 C 1.46901 * 110.99838 * 356.14942 * 10 5 3 12 12 C 1.46502 * 120.00068 * 179.97438 * 2 1 3 13 13 H 1.08999 * 110.88053 * 182.91558 * 12 2 1 14 14 C 1.55407 * 110.91988 * 59.05560 * 12 2 1 15 15 C 1.54331 * 102.82539 * 277.24921 * 14 12 2 16 16 N 1.47024 * 107.39979 * 337.97944 * 15 14 12 17 17 C 1.36938 * 125.64257 * 178.83108 * 16 15 14 18 18 H 1.07997 * 119.99690 * 175.01700 * 17 16 15 19 19 C 1.38812 * 120.00169 * 355.01321 * 17 16 15 20 20 N 1.31617 * 120.00216 * 5.41141 * 19 17 16 21 21 Si 1.86799 * 120.00012 * 185.40923 * 19 17 16 22 22 H 1.48503 * 109.46905 * 95.00249 * 21 19 17 23 23 H 1.48498 * 109.47248 * 215.00030 * 21 19 17 24 24 H 1.48493 * 109.47235 * 335.00113 * 21 19 17 25 25 C 1.47419 * 108.70623 * 358.86124 * 16 15 14 26 26 H 1.09000 * 109.47706 * 275.73064 * 1 2 3 27 27 H 1.08994 * 109.47116 * 35.73613 * 1 2 3 28 28 H 1.09002 * 109.47019 * 155.72857 * 1 2 3 29 29 H 1.08997 * 110.71086 * 336.69318 * 7 5 3 30 30 H 1.09000 * 110.70534 * 99.93339 * 7 5 3 31 31 H 1.08998 * 110.99363 * 277.56586 * 8 7 5 32 32 H 1.09007 * 110.98563 * 153.74692 * 8 7 5 33 33 H 1.09003 * 110.37164 * 204.10060 * 9 8 7 34 34 H 1.09000 * 110.37932 * 81.75223 * 9 8 7 35 35 H 1.08998 * 109.47136 * 69.30988 * 11 10 5 36 36 H 1.09001 * 109.46471 * 189.31005 * 11 10 5 37 37 H 1.09006 * 109.47120 * 309.30399 * 11 10 5 38 38 H 1.08999 * 110.69253 * 158.96134 * 14 12 2 39 39 H 1.08996 * 110.85468 * 35.61301 * 14 12 2 40 40 H 1.09002 * 109.87685 * 218.48281 * 15 14 12 41 41 H 1.08998 * 109.87970 * 97.47305 * 15 14 12 42 42 H 0.96998 * 120.00760 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.36473 * 142.96363 * 25 16 15 44 44 H 1.08997 * 110.36905 * 265.29251 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3484 1.1691 0.0879 5 6 1.3892 2.4700 -0.1093 6 1 0.3157 2.2830 -0.0862 7 6 1.7725 3.1877 -1.4206 8 6 1.8237 4.6802 -1.0000 9 6 2.3857 4.5803 0.4401 10 7 1.7673 3.3611 1.0030 11 6 2.6848 2.6854 1.9302 12 6 2.1975 -1.2687 0.0006 13 1 3.2726 -1.0966 0.0523 14 6 1.8286 -2.1231 -1.2441 15 6 0.5196 -2.8151 -0.8088 16 7 0.4896 -2.8143 0.6612 17 6 -0.5191 -3.3168 1.4390 18 1 -0.4114 -3.3416 2.5133 19 6 -1.6802 -3.7943 0.8467 20 7 -1.7698 -3.8631 -0.4646 21 14 -3.1156 -4.3391 1.9108 22 1 -4.0757 -3.2160 2.0597 23 1 -3.7978 -5.4917 1.2694 24 1 -2.6145 -4.7427 3.2491 25 6 1.7250 -2.1823 1.1589 26 1 -0.3634 0.1026 1.0225 27 1 -0.3633 0.8341 -0.6002 28 1 -0.3633 -0.9368 -0.4224 29 1 2.7483 2.8527 -1.7724 30 1 1.0109 3.0284 -2.1839 31 1 0.8266 5.1204 -1.0003 32 1 2.4983 5.2445 -1.6441 33 1 2.0965 5.4556 1.0219 34 1 3.4708 4.4798 0.4180 35 1 3.6491 2.5377 1.4440 36 1 2.8173 3.2988 2.8215 37 1 2.2686 1.7185 2.2132 38 1 2.6048 -2.8603 -1.4491 39 1 1.6586 -1.4885 -2.1138 40 1 0.5012 -3.8400 -1.1795 41 1 -0.3374 -2.2650 -1.1973 42 1 -2.5810 -4.1971 -0.8785 43 1 1.5154 -1.5887 2.0488 44 1 2.4779 -2.9400 1.3758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032946293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = 25.282464 kcal Electronic energy + Delta-G solvation = -23901.463798 eV Core-core repulsion = 20662.611580 eV Total energy + Delta-G solvation = -3238.852218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68434 -38.46986 -36.87050 -34.31228 -32.24343 -32.07614 -29.78572 -29.01540 -27.89731 -25.95391 -25.55803 -24.37600 -22.56550 -21.34615 -20.12447 -19.92625 -18.38885 -17.46361 -16.99225 -15.98443 -15.87464 -15.17714 -14.94500 -14.68258 -14.08514 -13.84405 -13.67947 -13.47916 -13.01119 -12.82864 -12.24477 -12.11678 -11.93990 -11.85336 -11.77004 -11.62093 -11.46734 -11.21003 -11.14615 -10.96435 -10.90827 -10.80713 -10.74708 -10.20205 -10.15675 -9.96602 -9.72248 -9.52266 -8.69811 -8.34062 -8.01884 -6.87954 -5.78399 -3.11319 2.72382 3.33881 3.37032 3.43274 3.44408 4.03553 4.44699 4.45818 4.57247 4.75586 5.00439 5.25808 5.34180 5.36310 5.41581 5.46045 5.49244 5.61672 5.64703 5.70456 5.70984 5.75441 5.79174 5.85323 5.96627 6.07789 6.09011 6.19706 6.20281 6.32281 6.48489 6.49913 6.61401 6.68551 6.83104 6.92629 7.07504 7.48367 7.52067 7.74416 7.84268 8.17677 8.42773 9.15579 9.75171 10.41375 11.33328 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.004735 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.473150 B = 5912.024223 C = 6168.123855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.583 5.583 3 C 0.502 3.498 4 O -0.556 6.556 5 C 0.046 3.954 6 H 0.109 0.891 7 C -0.127 4.127 8 C -0.126 4.126 9 C 0.039 3.961 10 N -0.510 5.510 11 C 0.007 3.993 12 C 0.121 3.879 13 H 0.097 0.903 14 C -0.156 4.156 15 C 0.172 3.828 16 N -0.603 5.603 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.922 5.922 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.127 3.873 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.253 0.747 43 H 0.043 0.957 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 14.043 -1.994 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.314 5.314 3 C 0.290 3.710 4 O -0.435 6.435 5 C -0.065 4.065 6 H 0.126 0.874 7 C -0.166 4.166 8 C -0.164 4.164 9 C -0.089 4.089 10 N -0.234 5.234 11 C -0.141 4.141 12 C 0.017 3.983 13 H 0.115 0.885 14 C -0.195 4.195 15 C 0.048 3.952 16 N -0.330 5.330 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.570 5.570 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.164 14.035 -1.671 15.419 hybrid contribution -0.231 -0.711 0.177 0.769 sum 5.932 13.324 -1.493 14.661 Atomic orbital electron populations 1.22338 0.78279 1.05244 1.02187 1.47798 1.07797 1.05096 1.70661 1.20933 0.87936 0.85739 0.76436 1.90603 1.14386 1.87275 1.51240 1.22782 1.01488 0.90145 0.92069 0.87365 1.22722 1.02771 0.95071 0.96059 1.22691 1.01870 0.95964 0.95872 1.23139 0.97536 0.93445 0.94777 1.64046 1.40616 1.04843 1.13924 1.22906 0.96602 0.98631 0.95988 1.22321 0.96144 0.82678 0.97184 0.88457 1.23305 1.00855 0.98647 0.96687 1.21279 0.91581 0.98406 0.83982 1.44529 1.17694 1.69112 1.01654 1.19044 0.92775 1.33869 0.89776 0.90495 1.24771 0.98020 1.01495 0.95846 1.69954 1.27350 1.52070 1.07584 0.86136 0.82724 0.77862 0.79292 1.21579 1.21799 1.20705 1.21860 0.90038 0.93368 0.94716 0.92617 0.92842 0.86225 0.90549 0.90149 0.90417 0.90610 0.90033 0.93177 0.91889 0.92073 0.91756 0.91352 0.91856 0.94112 0.92549 0.93703 0.93874 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 8.91 59.85 0.53 1.60 16 2 N -0.58 -10.15 2.91 -171.33 -0.50 -10.65 16 3 C 0.50 8.36 4.74 -10.98 -0.05 8.31 16 4 O -0.56 -10.40 13.22 5.56 0.07 -10.33 16 5 C 0.05 0.64 3.45 -67.87 -0.23 0.41 16 6 H 0.11 1.47 5.53 -51.93 -0.29 1.19 16 7 C -0.13 -1.48 6.45 -24.90 -0.16 -1.64 16 8 C -0.13 -1.21 7.08 -24.59 -0.17 -1.38 16 9 C 0.04 0.43 6.73 -2.30 -0.02 0.41 16 10 N -0.51 -6.95 5.44 -232.94 -1.27 -8.22 16 11 C 0.01 0.10 8.20 60.07 0.49 0.59 16 12 C 0.12 2.23 3.67 -65.64 -0.24 1.99 16 13 H 0.10 1.78 7.02 -51.93 -0.36 1.42 16 14 C -0.16 -2.87 6.47 -24.76 -0.16 -3.03 16 15 C 0.17 3.90 4.27 -3.06 -0.01 3.89 16 16 N -0.60 -14.43 2.47 -170.07 -0.42 -14.85 16 17 C -0.23 -5.99 10.27 -15.06 -0.15 -6.14 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -25.57 10.34 55.49 0.57 -25.00 16 21 Si 0.91 21.37 29.56 -169.99 -5.02 16.34 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.13 2.62 6.56 -2.53 -0.02 2.60 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.77 6.15 -51.93 -0.32 0.46 16 28 H 0.12 2.46 3.61 -51.93 -0.19 2.27 16 29 H 0.08 0.99 7.67 -51.93 -0.40 0.59 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.57 7.64 -51.93 -0.40 0.18 16 35 H 0.06 1.00 5.83 -51.93 -0.30 0.70 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.04 6.98 -51.93 -0.36 0.68 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.04 1.04 7.64 -51.93 -0.40 0.65 16 41 H 0.06 1.38 5.27 -51.93 -0.27 1.11 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -28.90 328.43 -8.97 -37.87 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.06 Total: 2.53 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.29 Total: 7.36 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -1.61 Total: -58.72 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.90 -8.97 -37.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032946293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.152 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds