Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99740 * 2 1 4 4 O 1.21280 * 120.00081 * 175.19729 * 3 2 1 5 5 C 1.50703 * 120.00094 * 355.19733 * 3 2 1 6 6 H 1.08999 * 109.87717 * 5.20788 * 5 3 2 7 7 C 1.54322 * 109.88402 * 244.01000 * 5 3 2 8 8 C 1.55149 * 103.01480 * 218.30620 * 7 5 3 9 9 C 1.54907 * 101.65206 * 35.66016 * 8 7 5 10 10 N 1.47445 * 109.88869 * 126.24116 * 5 3 2 11 11 C 1.46901 * 110.99838 * 356.14942 * 10 5 3 12 12 C 1.46502 * 120.00068 * 179.97438 * 2 1 3 13 13 H 1.08999 * 110.88053 * 182.91558 * 12 2 1 14 14 C 1.55407 * 110.91988 * 59.05560 * 12 2 1 15 15 C 1.54331 * 102.82539 * 277.24921 * 14 12 2 16 16 N 1.47024 * 107.39979 * 337.97944 * 15 14 12 17 17 C 1.36938 * 125.64257 * 178.83108 * 16 15 14 18 18 H 1.07997 * 119.99690 * 175.01700 * 17 16 15 19 19 C 1.38812 * 120.00169 * 355.01321 * 17 16 15 20 20 N 1.31617 * 120.00216 * 5.41141 * 19 17 16 21 21 Si 1.86799 * 120.00012 * 185.40923 * 19 17 16 22 22 H 1.48503 * 109.46905 * 95.00249 * 21 19 17 23 23 H 1.48498 * 109.47248 * 215.00030 * 21 19 17 24 24 H 1.48493 * 109.47235 * 335.00113 * 21 19 17 25 25 C 1.47419 * 108.70623 * 358.86124 * 16 15 14 26 26 H 1.09000 * 109.47706 * 275.73064 * 1 2 3 27 27 H 1.08994 * 109.47116 * 35.73613 * 1 2 3 28 28 H 1.09002 * 109.47019 * 155.72857 * 1 2 3 29 29 H 1.08997 * 110.71086 * 336.69318 * 7 5 3 30 30 H 1.09000 * 110.70534 * 99.93339 * 7 5 3 31 31 H 1.08998 * 110.99363 * 277.56586 * 8 7 5 32 32 H 1.09007 * 110.98563 * 153.74692 * 8 7 5 33 33 H 1.09003 * 110.37164 * 204.10060 * 9 8 7 34 34 H 1.09000 * 110.37932 * 81.75223 * 9 8 7 35 35 H 1.08998 * 109.47136 * 69.30988 * 11 10 5 36 36 H 1.09001 * 109.46471 * 189.31005 * 11 10 5 37 37 H 1.09006 * 109.47120 * 309.30399 * 11 10 5 38 38 H 1.08999 * 110.69253 * 158.96134 * 14 12 2 39 39 H 1.08996 * 110.85468 * 35.61301 * 14 12 2 40 40 H 1.09002 * 109.87685 * 218.48281 * 15 14 12 41 41 H 1.08998 * 109.87970 * 97.47305 * 15 14 12 42 42 H 0.96998 * 120.00760 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.36473 * 142.96363 * 25 16 15 44 44 H 1.08997 * 110.36905 * 265.29251 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3484 1.1691 0.0879 5 6 1.3892 2.4700 -0.1093 6 1 0.3157 2.2830 -0.0862 7 6 1.7725 3.1877 -1.4206 8 6 1.8237 4.6802 -1.0000 9 6 2.3857 4.5803 0.4401 10 7 1.7673 3.3611 1.0030 11 6 2.6848 2.6854 1.9302 12 6 2.1975 -1.2687 0.0006 13 1 3.2726 -1.0966 0.0523 14 6 1.8286 -2.1231 -1.2441 15 6 0.5196 -2.8151 -0.8088 16 7 0.4896 -2.8143 0.6612 17 6 -0.5191 -3.3168 1.4390 18 1 -0.4114 -3.3416 2.5133 19 6 -1.6802 -3.7943 0.8467 20 7 -1.7698 -3.8631 -0.4646 21 14 -3.1156 -4.3391 1.9108 22 1 -4.0757 -3.2160 2.0597 23 1 -3.7978 -5.4917 1.2694 24 1 -2.6145 -4.7427 3.2491 25 6 1.7250 -2.1823 1.1589 26 1 -0.3634 0.1026 1.0225 27 1 -0.3633 0.8341 -0.6002 28 1 -0.3633 -0.9368 -0.4224 29 1 2.7483 2.8527 -1.7724 30 1 1.0109 3.0284 -2.1839 31 1 0.8266 5.1204 -1.0003 32 1 2.4983 5.2445 -1.6441 33 1 2.0965 5.4556 1.0219 34 1 3.4708 4.4798 0.4180 35 1 3.6491 2.5377 1.4440 36 1 2.8173 3.2988 2.8215 37 1 2.2686 1.7185 2.2132 38 1 2.6048 -2.8603 -1.4491 39 1 1.6586 -1.4885 -2.1138 40 1 0.5012 -3.8400 -1.1795 41 1 -0.3374 -2.2650 -1.1973 42 1 -2.5810 -4.1971 -0.8785 43 1 1.5154 -1.5887 2.0488 44 1 2.4779 -2.9400 1.3758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032946293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = 6.848456 kcal Electronic energy + Delta-G solvation = -23902.263156 eV Core-core repulsion = 20662.611580 eV Total energy + Delta-G solvation = -3239.651576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94613 -39.88748 -38.21497 -35.91029 -34.06276 -33.06420 -31.35070 -30.42237 -29.44111 -27.50210 -26.64646 -26.17863 -23.84203 -22.20033 -21.95833 -21.30871 -19.73842 -18.92658 -18.72927 -17.34609 -17.04115 -16.65334 -16.31168 -16.16808 -15.63015 -15.41583 -14.99215 -14.78565 -14.37808 -13.95939 -13.79403 -13.61038 -13.44270 -13.31087 -13.18566 -12.88095 -12.81864 -12.79060 -12.46638 -12.35027 -12.20672 -12.05389 -12.01168 -11.87446 -11.73997 -11.70873 -11.55087 -10.88185 -10.65634 -9.72770 -9.27210 -8.82810 -7.83217 -5.17269 1.43008 1.49203 1.50060 1.58219 1.98514 2.51213 3.00090 3.35361 3.37211 3.61932 3.67613 3.73278 3.86283 4.00278 4.12938 4.24425 4.28705 4.35069 4.41948 4.53636 4.59979 4.61024 4.66512 4.70477 4.80048 4.86855 4.88025 4.91708 4.99063 5.00446 5.02563 5.06972 5.14222 5.27075 5.48500 5.59473 5.65717 5.78988 5.81858 5.90600 6.20703 6.44393 7.07969 7.12929 7.77309 8.42818 9.26886 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.004735 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.473150 B = 5912.024223 C = 6168.123855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.587 5.587 3 C 0.503 3.497 4 O -0.576 6.576 5 C 0.046 3.954 6 H 0.113 0.887 7 C -0.126 4.126 8 C -0.116 4.116 9 C 0.034 3.966 10 N -0.516 5.516 11 C 0.016 3.984 12 C 0.132 3.868 13 H 0.104 0.896 14 C -0.140 4.140 15 C 0.183 3.817 16 N -0.615 5.615 17 C -0.238 4.238 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.944 5.944 21 Si 0.969 3.031 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.127 3.873 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.004 0.996 41 H 0.038 0.962 42 H 0.248 0.752 43 H 0.036 0.964 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 16.052 -2.164 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.318 5.318 3 C 0.292 3.708 4 O -0.457 6.457 5 C -0.065 4.065 6 H 0.131 0.869 7 C -0.165 4.165 8 C -0.154 4.154 9 C -0.093 4.093 10 N -0.241 5.241 11 C -0.132 4.132 12 C 0.027 3.973 13 H 0.122 0.878 14 C -0.179 4.179 15 C 0.059 3.941 16 N -0.342 5.342 17 C -0.367 4.367 18 H 0.093 0.907 19 C -0.245 4.245 20 N -0.593 5.593 21 Si 0.798 3.202 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.200 1.200 25 C 0.001 3.999 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.245 16.068 -1.830 17.336 hybrid contribution -0.196 -1.316 0.280 1.360 sum 6.049 14.751 -1.550 16.019 Atomic orbital electron populations 1.22151 0.78229 1.04905 1.01645 1.47841 1.07748 1.05117 1.71064 1.21462 0.87780 0.86234 0.75285 1.90597 1.15476 1.87588 1.52043 1.22891 1.01194 0.88818 0.93633 0.86933 1.22758 1.02449 0.96171 0.95137 1.22710 1.03113 0.94675 0.94874 1.23279 0.97206 0.92722 0.96103 1.64127 1.40678 1.05348 1.13928 1.22756 0.95621 0.98021 0.96839 1.22142 0.96430 0.82897 0.95863 0.87835 1.23170 0.98818 0.98778 0.97106 1.21042 0.93294 0.96410 0.83336 1.44678 1.18206 1.69108 1.02195 1.19297 0.93663 1.33609 0.90087 0.90709 1.25440 1.00090 1.02096 0.96901 1.70134 1.27470 1.52887 1.08804 0.85200 0.79833 0.77109 0.78012 1.21222 1.22354 1.20000 1.21931 0.88936 0.93674 0.95353 0.93950 0.89693 0.89176 0.92034 0.88392 0.88969 0.88650 0.88233 0.93805 0.93533 0.90311 0.94074 0.89868 0.90320 0.97771 0.94382 0.94280 0.94527 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.50 8.91 127.77 1.14 3.64 16 2 N -0.59 -20.01 2.91 -814.34 -2.37 -22.38 16 3 C 0.50 16.22 4.74 87.66 0.42 16.63 16 4 O -0.58 -21.14 13.22 -3.03 -0.04 -21.18 16 5 C 0.05 1.18 3.45 44.51 0.15 1.33 16 6 H 0.11 2.80 5.53 -2.39 -0.01 2.79 16 7 C -0.13 -2.60 6.45 31.78 0.20 -2.39 16 8 C -0.12 -1.82 7.08 31.98 0.23 -1.59 16 9 C 0.03 0.66 6.73 86.77 0.58 1.24 16 10 N -0.52 -13.07 5.44 -890.87 -4.85 -17.92 16 11 C 0.02 0.45 8.20 127.69 1.05 1.49 16 12 C 0.13 4.75 3.67 46.47 0.17 4.93 16 13 H 0.10 3.68 7.02 -2.39 -0.02 3.67 16 14 C -0.14 -5.05 6.47 31.87 0.21 -4.84 16 15 C 0.18 8.50 4.27 86.73 0.37 8.87 16 16 N -0.62 -29.91 2.47 -691.99 -1.71 -31.62 16 17 C -0.24 -12.75 10.27 84.03 0.86 -11.89 16 18 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.05 -2.79 5.48 84.86 0.47 -2.32 16 20 N -0.94 -53.51 10.34 21.65 0.22 -53.29 16 21 Si 0.97 44.28 29.56 68.60 2.03 46.30 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.13 5.25 6.56 86.86 0.57 5.82 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 2.33 6.15 -2.39 -0.01 2.31 16 28 H 0.09 3.74 3.61 -2.39 -0.01 3.73 16 29 H 0.06 1.47 7.67 -2.39 -0.02 1.45 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 0.91 7.64 -2.39 -0.02 0.89 16 35 H 0.05 1.45 5.83 -2.39 -0.01 1.44 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.32 6.98 -2.38 -0.02 1.30 16 38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.00 0.22 7.64 -2.39 -0.02 0.20 16 41 H 0.04 1.92 5.27 -2.39 -0.01 1.90 16 42 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -62.65 328.43 0.68 -61.96 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.98 Total: 17.21 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 6.41 Total: 20.91 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -8.70 Total: -125.21 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.04 Total: -21.18 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -62.65 0.68 -61.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032946293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.812 kcal (2) G-P(sol) polarization free energy of solvation -62.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds