Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99830 * 2 1 4 4 O 1.21281 * 119.99792 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00318 * 359.97438 * 3 2 1 6 6 H 1.08998 * 109.90712 * 319.30017 * 5 3 2 7 7 C 1.53990 * 109.91734 * 80.40148 * 5 3 2 8 8 C 1.54594 * 105.14141 * 120.58079 * 7 5 3 9 9 C 1.54935 * 102.91888 * 21.95474 * 8 7 5 10 10 N 1.47901 * 109.91868 * 198.19645 * 5 3 2 11 11 C 1.46906 * 110.99877 * 94.80294 * 10 5 3 12 12 C 1.46505 * 119.99863 * 179.97438 * 2 1 3 13 13 H 1.08997 * 110.88330 * 176.12004 * 12 2 1 14 14 C 1.55160 * 111.00270 * 300.00041 * 12 2 1 15 15 C 1.54325 * 102.94117 * 82.61276 * 14 12 2 16 16 N 1.47025 * 107.27248 * 22.19090 * 15 14 12 17 17 C 1.36929 * 125.64838 * 181.02301 * 16 15 14 18 18 H 1.08006 * 120.00321 * 168.90670 * 17 16 15 19 19 C 1.38815 * 120.00089 * 348.90886 * 17 16 15 20 20 N 1.31620 * 119.99822 * 165.69242 * 19 17 16 21 21 Si 1.86794 * 120.00117 * 345.69055 * 19 17 16 22 22 H 1.48503 * 109.47270 * 65.27489 * 21 19 17 23 23 H 1.48509 * 109.47186 * 305.28075 * 21 19 17 24 24 H 1.48497 * 109.47663 * 185.27969 * 21 19 17 25 25 C 1.47424 * 108.70222 * 1.28456 * 16 15 14 26 26 H 1.08993 * 109.47309 * 270.00108 * 1 2 3 27 27 H 1.09005 * 109.47210 * 30.00317 * 1 2 3 28 28 H 1.09007 * 109.47162 * 149.99775 * 1 2 3 29 29 H 1.09001 * 110.31162 * 239.49731 * 7 5 3 30 30 H 1.08996 * 110.30706 * 1.66288 * 7 5 3 31 31 H 1.08992 * 110.72656 * 140.31829 * 8 7 5 32 32 H 1.09005 * 110.72341 * 263.60044 * 8 7 5 33 33 H 1.09003 * 110.66668 * 81.02724 * 9 8 7 34 34 H 1.09007 * 110.66447 * 203.98253 * 9 8 7 35 35 H 1.08995 * 109.46926 * 60.00118 * 11 10 5 36 36 H 1.09005 * 109.46936 * 180.02562 * 11 10 5 37 37 H 1.08995 * 109.46980 * 300.00201 * 11 10 5 38 38 H 1.08999 * 110.72190 * 324.25041 * 14 12 2 39 39 H 1.08997 * 110.71663 * 200.97556 * 14 12 2 40 40 H 1.08997 * 109.88443 * 262.77468 * 15 14 12 41 41 H 1.08997 * 110.00866 * 141.67828 * 15 14 12 42 42 H 0.96994 * 120.00730 * 354.93797 * 20 19 17 43 43 H 1.09004 * 110.36443 * 94.48574 * 25 16 15 44 44 H 1.09000 * 110.37081 * 216.80265 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5272 2.4051 -0.6692 7 6 0.9135 2.8062 1.4267 8 6 1.5673 4.1668 1.7602 9 6 1.8689 4.7585 0.3604 10 7 2.2777 3.5690 -0.4347 11 6 2.1400 3.8206 -1.8755 12 6 2.1975 -1.2688 0.0006 13 1 3.2717 -1.0973 -0.0684 14 6 1.8483 -2.1120 1.2554 15 6 0.5316 -2.8069 0.8494 16 7 0.4804 -2.8208 -0.6199 17 6 -0.5388 -3.3322 -1.3781 18 1 -0.5716 -3.1383 -2.4401 19 6 -1.5298 -4.0998 -0.7818 20 7 -2.6453 -4.3548 -1.4322 21 14 -1.2802 -4.7709 0.9434 22 1 -1.2094 -3.6437 1.9076 23 1 -0.0145 -5.5462 0.9947 24 1 -2.4178 -5.6564 1.2996 25 6 1.7108 -2.1987 -1.1417 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 -0.1728 2.8912 1.4559 30 1 1.2528 2.0419 2.1258 31 1 0.8730 4.8046 2.3072 32 1 2.4884 4.0240 2.3252 33 1 0.9749 5.2141 -0.0655 34 1 2.6798 5.4849 0.4164 35 1 1.1101 4.0988 -2.0989 36 1 2.8074 4.6313 -2.1681 37 1 2.4007 2.9183 -2.4284 38 1 1.6936 -1.4686 2.1215 39 1 2.6273 -2.8479 1.4545 40 1 -0.3184 -2.2507 1.2446 41 1 0.5158 -3.8279 1.2305 42 1 -2.8067 -3.9467 -2.2972 43 1 2.4591 -2.9613 -1.3581 44 1 1.4916 -1.6166 -2.0368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032946295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = 25.585791 kcal Electronic energy + Delta-G solvation = -23779.620772 eV Core-core repulsion = 20540.781708 eV Total energy + Delta-G solvation = -3238.839064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39810 -38.69160 -37.17982 -34.40241 -32.53298 -32.24157 -30.17122 -29.22088 -28.31066 -26.20695 -25.80227 -23.90150 -22.53680 -21.36204 -20.85087 -20.10759 -18.57420 -17.54964 -17.33607 -16.21813 -16.07927 -15.31739 -15.05843 -14.84529 -14.17438 -14.04507 -13.85095 -13.50917 -13.21280 -12.91963 -12.77860 -12.58145 -12.28407 -12.09948 -11.87399 -11.69471 -11.58215 -11.52627 -11.25828 -11.22450 -11.10806 -10.99864 -10.93888 -10.68173 -10.08746 -9.47499 -9.34935 -9.02494 -8.84264 -8.49405 -8.26538 -7.04521 -6.36451 -3.29698 2.85315 3.11876 3.37387 3.47181 3.68103 3.92938 4.41012 4.44425 4.57042 4.70829 4.83734 4.97082 4.99111 5.15301 5.21177 5.23469 5.31825 5.32494 5.39580 5.47931 5.56023 5.57384 5.61960 5.65642 5.75888 5.85394 5.86617 5.90756 5.96048 6.04375 6.22556 6.24740 6.38717 6.49196 6.56877 6.61321 6.73008 6.80237 7.00083 7.59847 7.75816 8.27788 8.50315 8.97976 9.48683 10.15998 11.13766 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.004731 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.594916 B = 5917.386020 C = 5942.377432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.594 5.594 3 C 0.520 3.480 4 O -0.529 6.529 5 C 0.048 3.952 6 H 0.076 0.924 7 C -0.117 4.117 8 C -0.121 4.121 9 C 0.036 3.964 10 N -0.500 5.500 11 C 0.018 3.982 12 C 0.125 3.875 13 H 0.105 0.895 14 C -0.139 4.139 15 C 0.108 3.892 16 N -0.610 5.610 17 C -0.324 4.324 18 H 0.079 0.921 19 C -0.018 4.018 20 N -0.927 5.927 21 Si 1.070 2.930 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.303 1.303 25 C 0.125 3.875 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.036 0.964 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 16.655 5.384 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.327 5.327 3 C 0.306 3.694 4 O -0.404 6.404 5 C -0.064 4.064 6 H 0.094 0.906 7 C -0.156 4.156 8 C -0.159 4.159 9 C -0.091 4.091 10 N -0.224 5.224 11 C -0.130 4.130 12 C 0.021 3.979 13 H 0.123 0.877 14 C -0.178 4.178 15 C -0.017 4.017 16 N -0.338 5.338 17 C -0.451 4.451 18 H 0.096 0.904 19 C -0.218 4.218 20 N -0.568 5.568 21 Si 0.905 3.095 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.231 1.231 25 C -0.001 4.001 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.155 15.527 6.533 18.302 hybrid contribution -0.239 0.993 -1.466 1.787 sum 6.916 16.520 5.067 18.612 Atomic orbital electron populations 1.22281 0.78930 1.05395 1.01908 1.47708 1.07422 1.05027 1.72539 1.20319 0.87987 0.84604 0.76476 1.90641 1.13643 1.87019 1.49143 1.22397 0.94199 0.91482 0.98306 0.90633 1.22307 1.00669 0.98310 0.94281 1.22479 1.01206 0.95543 0.96716 1.23301 0.99449 0.93047 0.93348 1.64369 1.49826 1.03631 1.04553 1.22525 0.99636 1.02522 0.88340 1.22242 0.96763 0.82698 0.96208 0.87712 1.22942 0.98508 0.98814 0.97527 1.22059 0.95860 0.97507 0.86231 1.44985 1.18264 1.70568 1.00014 1.20149 1.01024 1.30933 0.93007 0.90362 1.25835 0.93220 0.97253 1.05471 1.70893 1.23563 1.46118 1.16245 0.83835 0.73631 0.76131 0.75932 1.21427 1.22725 1.23106 1.21969 0.89559 0.93684 0.94913 0.93316 0.92627 0.86110 0.90386 0.90500 0.90651 0.90422 0.93623 0.89691 0.95371 0.90920 0.91216 0.91109 0.90462 0.93457 0.95430 0.92814 0.94618 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 8.32 59.85 0.50 1.42 16 2 N -0.59 -9.81 2.91 -171.34 -0.50 -10.31 16 3 C 0.52 8.55 6.71 -10.99 -0.07 8.47 16 4 O -0.53 -10.39 15.94 5.56 0.09 -10.30 16 5 C 0.05 0.63 2.08 -67.80 -0.14 0.49 16 6 H 0.08 0.94 5.96 -51.93 -0.31 0.63 16 7 C -0.12 -1.27 6.31 -25.38 -0.16 -1.43 16 8 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 9 C 0.04 0.35 6.58 -1.75 -0.01 0.34 16 10 N -0.50 -6.39 4.77 -231.93 -1.11 -7.49 16 11 C 0.02 0.20 9.41 60.07 0.57 0.77 16 12 C 0.13 2.19 3.66 -65.66 -0.24 1.94 16 13 H 0.10 1.83 7.02 -51.93 -0.36 1.46 16 14 C -0.14 -2.36 6.48 -24.89 -0.16 -2.52 16 15 C 0.11 2.24 3.58 -3.06 -0.01 2.23 16 16 N -0.61 -14.06 1.80 -169.93 -0.31 -14.36 16 17 C -0.32 -8.80 10.07 -15.06 -0.15 -8.95 16 18 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 19 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 20 N -0.93 -28.22 13.70 55.49 0.76 -27.46 16 21 Si 1.07 26.14 24.53 -169.99 -4.17 21.98 16 22 H -0.29 -6.34 5.43 56.52 0.31 -6.04 16 23 H -0.30 -7.15 6.84 56.52 0.39 -6.76 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 25 C 0.13 2.49 6.43 -2.41 -0.02 2.47 16 26 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 27 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 28 H 0.12 2.39 4.75 -51.92 -0.25 2.14 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.39 7.97 -51.93 -0.41 -0.03 16 34 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.03 0.27 8.01 -51.93 -0.42 -0.14 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.01 5.75 -51.93 -0.30 0.71 16 41 H 0.03 0.62 3.81 -51.93 -0.20 0.43 16 42 H 0.26 7.88 8.73 -40.82 -0.36 7.52 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -32.02 328.24 -7.74 -39.76 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.28 Total: -0.09 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.17 Total: 3.33 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -1.15 Total: -59.62 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -4.17 Total: 21.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.02 -7.74 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032946295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.347 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds