Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99830 * 2 1 4 4 O 1.21281 * 119.99792 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00318 * 359.97438 * 3 2 1 6 6 H 1.08998 * 109.90712 * 319.30017 * 5 3 2 7 7 C 1.53990 * 109.91734 * 80.40148 * 5 3 2 8 8 C 1.54594 * 105.14141 * 120.58079 * 7 5 3 9 9 C 1.54935 * 102.91888 * 21.95474 * 8 7 5 10 10 N 1.47901 * 109.91868 * 198.19645 * 5 3 2 11 11 C 1.46906 * 110.99877 * 94.80294 * 10 5 3 12 12 C 1.46505 * 119.99863 * 179.97438 * 2 1 3 13 13 H 1.08997 * 110.88330 * 176.12004 * 12 2 1 14 14 C 1.55160 * 111.00270 * 300.00041 * 12 2 1 15 15 C 1.54325 * 102.94117 * 82.61276 * 14 12 2 16 16 N 1.47025 * 107.27248 * 22.19090 * 15 14 12 17 17 C 1.36929 * 125.64838 * 181.02301 * 16 15 14 18 18 H 1.08006 * 120.00321 * 168.90670 * 17 16 15 19 19 C 1.38815 * 120.00089 * 348.90886 * 17 16 15 20 20 N 1.31620 * 119.99822 * 165.69242 * 19 17 16 21 21 Si 1.86794 * 120.00117 * 345.69055 * 19 17 16 22 22 H 1.48503 * 109.47270 * 65.27489 * 21 19 17 23 23 H 1.48509 * 109.47186 * 305.28075 * 21 19 17 24 24 H 1.48497 * 109.47663 * 185.27969 * 21 19 17 25 25 C 1.47424 * 108.70222 * 1.28456 * 16 15 14 26 26 H 1.08993 * 109.47309 * 270.00108 * 1 2 3 27 27 H 1.09005 * 109.47210 * 30.00317 * 1 2 3 28 28 H 1.09007 * 109.47162 * 149.99775 * 1 2 3 29 29 H 1.09001 * 110.31162 * 239.49731 * 7 5 3 30 30 H 1.08996 * 110.30706 * 1.66288 * 7 5 3 31 31 H 1.08992 * 110.72656 * 140.31829 * 8 7 5 32 32 H 1.09005 * 110.72341 * 263.60044 * 8 7 5 33 33 H 1.09003 * 110.66668 * 81.02724 * 9 8 7 34 34 H 1.09007 * 110.66447 * 203.98253 * 9 8 7 35 35 H 1.08995 * 109.46926 * 60.00118 * 11 10 5 36 36 H 1.09005 * 109.46936 * 180.02562 * 11 10 5 37 37 H 1.08995 * 109.46980 * 300.00201 * 11 10 5 38 38 H 1.08999 * 110.72190 * 324.25041 * 14 12 2 39 39 H 1.08997 * 110.71663 * 200.97556 * 14 12 2 40 40 H 1.08997 * 109.88443 * 262.77468 * 15 14 12 41 41 H 1.08997 * 110.00866 * 141.67828 * 15 14 12 42 42 H 0.96994 * 120.00730 * 354.93797 * 20 19 17 43 43 H 1.09004 * 110.36443 * 94.48574 * 25 16 15 44 44 H 1.09000 * 110.37081 * 216.80265 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5272 2.4051 -0.6692 7 6 0.9135 2.8062 1.4267 8 6 1.5673 4.1668 1.7602 9 6 1.8689 4.7585 0.3604 10 7 2.2777 3.5690 -0.4347 11 6 2.1400 3.8206 -1.8755 12 6 2.1975 -1.2688 0.0006 13 1 3.2717 -1.0973 -0.0684 14 6 1.8483 -2.1120 1.2554 15 6 0.5316 -2.8069 0.8494 16 7 0.4804 -2.8208 -0.6199 17 6 -0.5388 -3.3322 -1.3781 18 1 -0.5716 -3.1383 -2.4401 19 6 -1.5298 -4.0998 -0.7818 20 7 -2.6453 -4.3548 -1.4322 21 14 -1.2802 -4.7709 0.9434 22 1 -1.2094 -3.6437 1.9076 23 1 -0.0145 -5.5462 0.9947 24 1 -2.4178 -5.6564 1.2996 25 6 1.7108 -2.1987 -1.1417 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 -0.1728 2.8912 1.4559 30 1 1.2528 2.0419 2.1258 31 1 0.8730 4.8046 2.3072 32 1 2.4884 4.0240 2.3252 33 1 0.9749 5.2141 -0.0655 34 1 2.6798 5.4849 0.4164 35 1 1.1101 4.0988 -2.0989 36 1 2.8074 4.6313 -2.1681 37 1 2.4007 2.9183 -2.4284 38 1 1.6936 -1.4686 2.1215 39 1 2.6273 -2.8479 1.4545 40 1 -0.3184 -2.2507 1.2446 41 1 0.5158 -3.8279 1.2305 42 1 -2.8067 -3.9467 -2.2972 43 1 2.4591 -2.9613 -1.3581 44 1 1.4916 -1.6166 -2.0368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032946295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = 3.220918 kcal Electronic energy + Delta-G solvation = -23780.590586 eV Core-core repulsion = 20540.781708 eV Total energy + Delta-G solvation = -3239.808878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61889 -39.94790 -38.49491 -35.94687 -34.37906 -33.14528 -31.74219 -30.53574 -29.69145 -27.60280 -26.67609 -25.68421 -23.73062 -22.58829 -22.11257 -21.43324 -19.87386 -19.55627 -18.56118 -17.56112 -17.16433 -16.86139 -16.35831 -16.06202 -15.57852 -15.22541 -15.12761 -14.84102 -14.65056 -14.42332 -14.14227 -13.56551 -13.51698 -13.43333 -13.24748 -13.03873 -12.90804 -12.74190 -12.65729 -12.44909 -12.35926 -12.23499 -12.00979 -11.80908 -11.69844 -11.41252 -11.04623 -10.73852 -10.65784 -9.73481 -9.40067 -8.97879 -8.61351 -5.45763 1.43085 1.52906 1.60154 1.74615 1.90620 2.56656 3.00738 3.15250 3.26195 3.45176 3.59495 3.70581 3.77659 3.83884 3.94621 4.12380 4.21392 4.35584 4.37741 4.39813 4.44324 4.51865 4.57983 4.63902 4.69454 4.72735 4.82022 4.84567 4.87542 4.91392 4.94945 4.98663 5.07548 5.09560 5.21817 5.24121 5.53449 5.57062 5.78826 5.98801 6.11469 6.46852 6.83451 7.21792 7.42806 8.09747 8.91102 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.004731 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.594916 B = 5917.386020 C = 5942.377432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.595 5.595 3 C 0.518 3.482 4 O -0.565 6.565 5 C 0.050 3.950 6 H 0.083 0.917 7 C -0.116 4.116 8 C -0.117 4.117 9 C 0.037 3.963 10 N -0.528 5.528 11 C 0.020 3.980 12 C 0.133 3.867 13 H 0.108 0.892 14 C -0.125 4.125 15 C 0.102 3.898 16 N -0.621 5.621 17 C -0.305 4.305 18 H 0.045 0.955 19 C -0.071 4.071 20 N -0.964 5.964 21 Si 1.107 2.893 22 H -0.247 1.247 23 H -0.290 1.290 24 H -0.317 1.317 25 C 0.125 3.875 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.024 0.976 42 H 0.248 0.752 43 H 0.041 0.959 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 18.641 7.647 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.328 5.328 3 C 0.307 3.693 4 O -0.443 6.443 5 C -0.062 4.062 6 H 0.100 0.900 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.090 4.090 10 N -0.252 5.252 11 C -0.128 4.128 12 C 0.028 3.972 13 H 0.126 0.874 14 C -0.164 4.164 15 C -0.022 4.022 16 N -0.349 5.349 17 C -0.433 4.433 18 H 0.063 0.937 19 C -0.264 4.264 20 N -0.609 5.609 21 Si 0.936 3.064 22 H -0.172 1.172 23 H -0.218 1.218 24 H -0.247 1.247 25 C -0.001 4.001 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.841 17.559 8.802 21.149 hybrid contribution -0.365 0.444 -2.305 2.376 sum 7.475 18.004 6.497 20.548 Atomic orbital electron populations 1.22168 0.78448 1.04527 1.02624 1.47777 1.07637 1.04934 1.72419 1.20978 0.87746 0.85488 0.75125 1.90618 1.15302 1.87551 1.50827 1.22408 0.93778 0.89872 1.00099 0.89960 1.22363 1.02024 0.98776 0.92271 1.22495 1.01268 0.95086 0.96622 1.23388 1.00454 0.92090 0.93066 1.64323 1.50558 1.04830 1.05523 1.22507 1.00850 1.01900 0.87580 1.22088 0.96898 0.82843 0.95347 0.87392 1.22917 0.96836 0.99010 0.97626 1.22173 0.98043 0.97575 0.84384 1.44929 1.18411 1.70322 1.01288 1.19959 1.01800 1.29530 0.92009 0.93676 1.26973 0.92845 0.98041 1.08580 1.70992 1.25381 1.48183 1.16315 0.83420 0.73204 0.76622 0.73201 1.17185 1.21826 1.24651 1.22037 0.88460 0.94032 0.95529 0.91712 0.90455 0.89962 0.88229 0.91602 0.87939 0.91510 0.91933 0.88964 0.93883 0.89648 0.93425 0.88929 0.88493 0.93602 0.95906 0.94285 0.94073 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.95 8.32 127.77 1.06 3.02 16 2 N -0.60 -18.65 2.91 -814.38 -2.37 -21.02 16 3 C 0.52 16.26 6.71 87.66 0.59 16.85 16 4 O -0.56 -21.67 15.94 -3.03 -0.05 -21.72 16 5 C 0.05 1.20 2.08 44.31 0.09 1.29 16 6 H 0.08 1.83 5.96 -2.39 -0.01 1.82 16 7 C -0.12 -2.14 6.31 31.47 0.20 -1.94 16 8 C -0.12 -1.78 7.06 31.80 0.22 -1.55 16 9 C 0.04 0.60 6.58 86.60 0.57 1.17 16 10 N -0.53 -12.42 4.77 -887.68 -4.23 -16.66 16 11 C 0.02 0.41 9.41 127.69 1.20 1.61 16 12 C 0.13 4.41 3.66 46.46 0.17 4.58 16 13 H 0.11 3.59 7.02 -2.39 -0.02 3.57 16 14 C -0.13 -3.83 6.48 31.78 0.21 -3.63 16 15 C 0.10 3.99 3.58 86.73 0.31 4.30 16 16 N -0.62 -28.32 1.80 -691.54 -1.24 -29.57 16 17 C -0.30 -16.88 10.07 84.04 0.85 -16.04 16 18 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 19 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 20 N -0.96 -60.46 13.70 21.65 0.30 -60.16 16 21 Si 1.11 52.13 24.53 68.60 1.68 53.81 16 22 H -0.25 -9.99 5.43 99.48 0.54 -9.45 16 23 H -0.29 -13.15 6.84 99.48 0.68 -12.47 16 24 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 25 C 0.13 4.92 6.43 86.93 0.56 5.48 16 26 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 27 H 0.08 1.95 5.97 -2.38 -0.01 1.93 16 28 H 0.08 3.20 4.75 -2.38 -0.01 3.19 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 0.82 7.97 -2.39 -0.02 0.80 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.04 0.74 8.01 -2.39 -0.02 0.72 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.05 1.82 5.75 -2.39 -0.01 1.80 16 41 H 0.02 0.96 3.81 -2.39 -0.01 0.95 16 42 H 0.25 15.63 8.73 -92.71 -0.81 14.82 16 43 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -70.99 328.24 1.33 -69.67 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.75 Total: 14.13 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 6.50 Total: 11.52 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -7.55 Total: -127.41 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 1.68 Total: 53.81 kcal Total: -70.99 1.33 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032946295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.888 kcal (2) G-P(sol) polarization free energy of solvation -70.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds