Wall clock time and date at job start Tue Mar 31 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46840 * 110.99393 * 2 1 4 4 C 1.53039 * 109.52094 * 174.15258 * 3 2 1 5 5 C 1.53115 * 109.27463 * 59.18082 * 4 3 2 6 6 C 1.53115 * 109.16562 * 302.35096 * 5 4 3 7 7 C 1.46851 * 110.99962 * 235.79671 * 2 1 3 8 8 H 1.09004 * 109.46409 * 65.83190 * 7 2 1 9 9 C 1.50695 * 109.46298 * 305.85601 * 7 2 1 10 10 O 1.21282 * 119.99970 * 339.97447 * 9 7 2 11 11 N 1.34783 * 120.00217 * 159.98061 * 9 7 2 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46763 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.78411 * 56.27850 * 13 12 11 15 15 C 1.53503 * 113.46305 * 187.05458 * 13 12 11 16 16 C 1.53502 * 83.33901 * 140.84911 * 15 13 12 17 17 N 1.47060 * 87.98821 * 333.93176 * 16 15 13 18 18 C 1.36936 * 136.05987 * 207.09007 * 17 16 15 19 19 H 1.08002 * 120.00307 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99894 * 0.04558 * 18 17 16 21 21 N 1.31622 * 119.99974 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00062 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47141 * 59.99994 * 22 20 18 24 24 H 1.48497 * 109.46923 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46952 * 299.99784 * 22 20 18 26 26 H 1.09007 * 109.47152 * 184.20245 * 1 2 3 27 27 H 1.08999 * 109.47329 * 304.19917 * 1 2 3 28 28 H 1.08997 * 109.47481 * 64.20177 * 1 2 3 29 29 H 1.09006 * 109.46301 * 54.13864 * 3 2 1 30 30 H 1.09006 * 109.46489 * 294.16509 * 3 2 1 31 31 H 1.09001 * 109.49800 * 299.24460 * 4 3 2 32 32 H 1.08999 * 109.50841 * 179.12607 * 4 3 2 33 33 H 1.09003 * 109.52349 * 182.44264 * 5 4 3 34 34 H 1.09011 * 109.57515 * 62.29134 * 5 4 3 35 35 H 1.08998 * 109.50246 * 297.71545 * 6 5 4 36 36 H 1.09005 * 109.50260 * 177.59725 * 6 5 4 37 37 H 0.97002 * 119.99491 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.47104 * 59.99659 * 12 11 9 39 39 H 1.09005 * 109.47052 * 299.99488 * 12 11 9 40 40 H 1.08997 * 114.20730 * 254.43225 * 15 13 12 41 41 H 1.08995 * 114.20536 * 27.26448 * 15 13 12 42 42 H 1.09007 * 113.46569 * 219.15062 * 16 15 13 43 43 H 1.08996 * 113.51859 * 88.72616 * 16 15 13 44 44 H 0.97004 * 119.99680 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5179 1.3343 0.1470 5 6 4.1187 0.5371 -1.0141 6 6 3.5181 -0.8713 -1.0208 7 6 1.9952 -0.7707 -1.1339 8 1 1.7326 -0.2706 -2.0661 9 6 1.3982 -2.1542 -1.1209 10 8 0.9169 -2.5974 -0.0997 11 7 1.3992 -2.8993 -2.2441 12 6 0.8183 -4.2441 -2.2316 13 6 0.9470 -4.8681 -3.6226 14 1 1.9768 -4.8965 -3.9788 15 6 0.2154 -6.2105 -3.7603 16 6 -0.1426 -5.6691 -5.1514 17 7 0.0030 -4.3121 -4.6037 18 6 -0.5128 -3.0750 -4.8841 19 1 -0.2169 -2.2201 -4.2942 20 6 -1.4163 -2.9198 -5.9264 21 7 -1.7777 -3.9618 -6.6448 22 14 -2.1194 -1.2320 -6.3095 23 1 -1.0140 -0.3012 -6.6514 24 1 -3.0543 -1.3346 -7.4587 25 1 -2.8495 -0.7189 -5.1225 26 1 -0.3634 -1.0250 0.0753 27 1 -0.3634 0.5776 0.8499 28 1 -0.3634 0.4472 -0.9252 29 1 1.5631 1.9257 0.8329 30 1 1.7324 1.8608 -0.9377 31 1 3.7810 0.8568 1.0908 32 1 3.9097 2.3513 0.1313 33 1 5.1997 0.4715 -0.8901 34 1 3.8897 1.0353 -1.9563 35 1 3.7811 -1.3835 -0.0953 36 1 3.9100 -1.4301 -1.8707 37 1 1.7840 -2.5447 -3.0609 38 1 -0.2348 -4.1824 -1.9574 39 1 1.3472 -4.8616 -1.5056 40 1 0.8739 -7.0790 -3.7747 41 1 -0.6380 -6.3250 -3.0921 42 1 -1.1608 -5.9056 -5.4603 43 1 0.5963 -5.9104 -5.9155 44 1 -2.4094 -3.8534 -7.3729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038417210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:25 Heat of formation + Delta-G solvation = 22.179003 kcal Electronic energy + Delta-G solvation = -23188.910997 eV Core-core repulsion = 19949.924203 eV Total energy + Delta-G solvation = -3238.986794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.17515 -38.48201 -37.54358 -34.17490 -33.37947 -32.25977 -31.30936 -28.12816 -27.72148 -26.61420 -23.94412 -23.49804 -22.93497 -21.80510 -20.33557 -19.71867 -19.17644 -17.25872 -16.46934 -16.06767 -15.39514 -15.29785 -14.85674 -14.63682 -14.38396 -14.31990 -13.89776 -13.51228 -13.38479 -13.12444 -12.80468 -12.72520 -12.18025 -11.83138 -11.66292 -11.53226 -11.39730 -11.14020 -11.03595 -10.93565 -10.82069 -10.77791 -10.61481 -10.51692 -10.00939 -9.87118 -9.46355 -9.11967 -8.84482 -8.54211 -8.27940 -6.93217 -5.80453 -3.12983 2.94287 3.33723 3.37606 3.40146 3.40281 3.99789 4.39447 4.65107 4.71762 4.79829 5.05209 5.10345 5.17395 5.23645 5.37403 5.40163 5.47556 5.52076 5.55185 5.57365 5.70074 5.72930 5.77865 5.82042 5.90182 5.95404 5.98212 6.10609 6.20524 6.23578 6.31214 6.39468 6.58146 6.71312 6.89779 6.97351 7.07411 7.19669 7.37230 7.54325 7.93682 7.94242 8.61601 8.99076 9.66512 10.59844 11.36671 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.005245 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.672671 B = 5336.921975 C = 6271.007266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.105 4.105 7 C 0.068 3.932 8 H 0.061 0.939 9 C 0.514 3.486 10 O -0.533 6.533 11 N -0.713 5.713 12 C 0.123 3.877 13 C 0.127 3.873 14 H 0.048 0.952 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.214 4.214 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.285 1.285 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.476 6.340 10.061 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.044 4.044 8 H 0.079 0.921 9 C 0.299 3.701 10 O -0.410 6.410 11 N -0.364 5.364 12 C -0.001 4.001 13 C 0.019 3.981 14 H 0.065 0.935 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.341 4.341 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.212 1.212 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.043 6.027 11.021 16.082 hybrid contribution -0.507 1.572 -1.618 2.313 sum 9.535 7.599 9.403 15.398 Atomic orbital electron populations 1.22598 0.86448 1.04500 0.99883 1.61671 1.08407 1.12634 1.41682 1.22144 0.95597 0.89012 1.00581 1.21605 0.94492 1.00016 0.99433 1.21580 1.00019 0.95374 0.98773 1.21527 0.91775 0.97842 1.03228 1.21611 0.96310 0.92742 0.93732 0.92145 1.20297 0.79406 0.86775 0.83612 1.90636 1.45806 1.72575 1.31980 1.45998 1.60667 1.17396 1.12341 1.21783 0.98663 0.81581 0.98106 1.22420 0.94489 0.92188 0.88973 0.93474 1.23656 0.99950 0.95149 1.01231 1.22029 1.00544 0.83637 0.91216 1.45659 1.47408 1.04691 1.34948 1.18769 1.19555 0.83723 1.12090 0.90410 1.24762 1.00034 0.97313 0.98191 1.69815 1.36356 1.28040 1.22230 0.86284 0.78772 0.83525 0.77690 1.21254 1.21468 1.21154 0.89038 0.91502 0.95984 0.90494 0.94918 0.90940 0.91521 0.91367 0.91963 0.90439 0.90916 0.76418 0.91208 0.92314 0.92332 0.90209 0.91003 0.95748 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.09 60.06 0.55 0.74 16 2 N -0.52 -7.29 4.51 -236.32 -1.07 -8.36 16 3 C 0.05 0.60 5.46 -3.84 -0.02 0.58 16 4 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 5 C -0.12 -1.13 6.00 -26.61 -0.16 -1.29 16 6 C -0.11 -1.22 5.36 -26.65 -0.14 -1.36 16 7 C 0.07 0.96 2.24 -68.88 -0.15 0.81 16 8 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.51 8.79 6.26 -10.99 -0.07 8.73 16 10 O -0.53 -10.75 14.52 5.56 0.08 -10.66 16 11 N -0.71 -12.11 5.33 -60.29 -0.32 -12.43 16 12 C 0.12 2.23 5.52 -4.04 -0.02 2.20 16 13 C 0.13 2.42 4.10 -72.40 -0.30 2.12 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.16 -2.91 8.03 -26.21 -0.21 -3.12 16 16 C 0.15 3.44 7.39 -8.51 -0.06 3.37 16 17 N -0.60 -14.49 3.65 -177.00 -0.65 -15.13 16 18 C -0.21 -5.68 10.55 -15.06 -0.16 -5.84 16 19 H 0.08 1.98 7.50 -52.49 -0.39 1.58 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.75 11.51 55.49 0.64 -26.11 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 H 0.09 1.59 5.63 -51.92 -0.29 1.30 16 27 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 6.52 8.37 -40.82 -0.34 6.18 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 42 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -31.16 347.23 -9.83 -40.98 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.71 Total: 4.26 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -1.01 Total: 5.42 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -1.39 Total: -62.03 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.16 -9.83 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.163 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds