Wall clock time and date at job start Tue Mar 31 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46840 * 110.99393 * 2 1 4 4 C 1.53039 * 109.52094 * 174.15258 * 3 2 1 5 5 C 1.53115 * 109.27463 * 59.18082 * 4 3 2 6 6 C 1.53115 * 109.16562 * 302.35096 * 5 4 3 7 7 C 1.46851 * 110.99962 * 235.79671 * 2 1 3 8 8 H 1.09004 * 109.46409 * 65.83190 * 7 2 1 9 9 C 1.50695 * 109.46298 * 305.85601 * 7 2 1 10 10 O 1.21282 * 119.99970 * 339.97447 * 9 7 2 11 11 N 1.34783 * 120.00217 * 159.98061 * 9 7 2 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46763 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.78411 * 56.27850 * 13 12 11 15 15 C 1.53503 * 113.46305 * 187.05458 * 13 12 11 16 16 C 1.53502 * 83.33901 * 140.84911 * 15 13 12 17 17 N 1.47060 * 87.98821 * 333.93176 * 16 15 13 18 18 C 1.36936 * 136.05987 * 207.09007 * 17 16 15 19 19 H 1.08002 * 120.00307 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99894 * 0.04558 * 18 17 16 21 21 N 1.31622 * 119.99974 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00062 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47141 * 59.99994 * 22 20 18 24 24 H 1.48497 * 109.46923 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46952 * 299.99784 * 22 20 18 26 26 H 1.09007 * 109.47152 * 184.20245 * 1 2 3 27 27 H 1.08999 * 109.47329 * 304.19917 * 1 2 3 28 28 H 1.08997 * 109.47481 * 64.20177 * 1 2 3 29 29 H 1.09006 * 109.46301 * 54.13864 * 3 2 1 30 30 H 1.09006 * 109.46489 * 294.16509 * 3 2 1 31 31 H 1.09001 * 109.49800 * 299.24460 * 4 3 2 32 32 H 1.08999 * 109.50841 * 179.12607 * 4 3 2 33 33 H 1.09003 * 109.52349 * 182.44264 * 5 4 3 34 34 H 1.09011 * 109.57515 * 62.29134 * 5 4 3 35 35 H 1.08998 * 109.50246 * 297.71545 * 6 5 4 36 36 H 1.09005 * 109.50260 * 177.59725 * 6 5 4 37 37 H 0.97002 * 119.99491 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.47104 * 59.99659 * 12 11 9 39 39 H 1.09005 * 109.47052 * 299.99488 * 12 11 9 40 40 H 1.08997 * 114.20730 * 254.43225 * 15 13 12 41 41 H 1.08995 * 114.20536 * 27.26448 * 15 13 12 42 42 H 1.09007 * 113.46569 * 219.15062 * 16 15 13 43 43 H 1.08996 * 113.51859 * 88.72616 * 16 15 13 44 44 H 0.97004 * 119.99680 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5179 1.3343 0.1470 5 6 4.1187 0.5371 -1.0141 6 6 3.5181 -0.8713 -1.0208 7 6 1.9952 -0.7707 -1.1339 8 1 1.7326 -0.2706 -2.0661 9 6 1.3982 -2.1542 -1.1209 10 8 0.9169 -2.5974 -0.0997 11 7 1.3992 -2.8993 -2.2441 12 6 0.8183 -4.2441 -2.2316 13 6 0.9470 -4.8681 -3.6226 14 1 1.9768 -4.8965 -3.9788 15 6 0.2154 -6.2105 -3.7603 16 6 -0.1426 -5.6691 -5.1514 17 7 0.0030 -4.3121 -4.6037 18 6 -0.5128 -3.0750 -4.8841 19 1 -0.2169 -2.2201 -4.2942 20 6 -1.4163 -2.9198 -5.9264 21 7 -1.7777 -3.9618 -6.6448 22 14 -2.1194 -1.2320 -6.3095 23 1 -1.0140 -0.3012 -6.6514 24 1 -3.0543 -1.3346 -7.4587 25 1 -2.8495 -0.7189 -5.1225 26 1 -0.3634 -1.0250 0.0753 27 1 -0.3634 0.5776 0.8499 28 1 -0.3634 0.4472 -0.9252 29 1 1.5631 1.9257 0.8329 30 1 1.7324 1.8608 -0.9377 31 1 3.7810 0.8568 1.0908 32 1 3.9097 2.3513 0.1313 33 1 5.1997 0.4715 -0.8901 34 1 3.8897 1.0353 -1.9563 35 1 3.7811 -1.3835 -0.0953 36 1 3.9100 -1.4301 -1.8707 37 1 1.7840 -2.5447 -3.0609 38 1 -0.2348 -4.1824 -1.9574 39 1 1.3472 -4.8616 -1.5056 40 1 0.8739 -7.0790 -3.7747 41 1 -0.6380 -6.3250 -3.0921 42 1 -1.1608 -5.9056 -5.4603 43 1 0.5963 -5.9104 -5.9155 44 1 -2.4094 -3.8534 -7.3729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038417210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:25 Heat of formation + Delta-G solvation = 0.443681 kcal Electronic energy + Delta-G solvation = -23189.853511 eV Core-core repulsion = 19949.924203 eV Total energy + Delta-G solvation = -3239.929308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.41418 -40.02407 -38.80826 -35.57977 -34.40774 -34.23203 -32.32571 -29.97540 -29.19767 -27.71844 -25.40120 -25.06960 -23.93232 -23.26509 -21.58615 -20.98747 -20.62142 -18.82925 -18.01275 -17.35654 -17.09974 -16.39790 -16.34457 -15.79112 -15.75814 -15.58666 -15.29771 -14.91619 -14.82514 -14.20797 -13.99120 -13.91594 -13.58251 -13.37836 -13.03374 -12.95719 -12.74465 -12.70510 -12.57155 -12.37529 -12.35169 -11.88240 -11.83958 -11.64787 -11.63163 -11.35190 -11.12441 -10.85516 -10.52418 -9.99052 -9.35599 -8.89632 -7.88312 -5.19753 1.41236 1.43813 1.49365 1.60606 2.12509 2.45444 2.91540 3.33630 3.42482 3.66350 3.80159 3.93472 3.97531 4.05421 4.13713 4.16144 4.30191 4.34623 4.40889 4.48170 4.56744 4.64331 4.69238 4.74355 4.81926 4.88244 4.95494 5.01924 5.03661 5.05332 5.10108 5.16890 5.22287 5.32008 5.44544 5.47803 5.58575 5.74459 5.88114 5.96686 6.08400 6.58927 6.92804 7.26324 7.63420 8.63609 9.29146 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.005245 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.672671 B = 5336.921975 C = 6271.007266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.051 3.949 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.071 3.929 8 H 0.062 0.938 9 C 0.512 3.488 10 O -0.567 6.567 11 N -0.712 5.712 12 C 0.133 3.867 13 C 0.134 3.866 14 H 0.071 0.929 15 C -0.135 4.135 16 C 0.143 3.857 17 N -0.629 5.629 18 C -0.207 4.207 19 H 0.085 0.915 20 C -0.070 4.070 21 N -0.953 5.953 22 Si 0.965 3.035 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.285 1.285 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.018 0.982 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.406 0.594 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.024 0.976 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.667 7.578 10.984 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.041 4.041 8 H 0.080 0.920 9 C 0.299 3.701 10 O -0.446 6.446 11 N -0.362 5.362 12 C 0.008 3.992 13 C 0.027 3.973 14 H 0.088 0.912 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.355 5.355 18 C -0.335 4.335 19 H 0.102 0.898 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.794 3.206 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.211 1.211 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.037 0.963 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.241 0.759 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.278 7.276 11.964 18.623 hybrid contribution -1.159 1.144 -1.834 2.453 sum 11.118 8.420 10.130 17.238 Atomic orbital electron populations 1.22490 0.87357 1.02660 1.00531 1.61707 1.07810 1.14535 1.41707 1.22287 0.96904 0.87243 1.01145 1.21616 0.93062 1.01393 0.99122 1.21593 1.01007 0.93733 0.99055 1.21550 0.89739 0.99586 1.03115 1.21648 0.97865 0.90633 0.93933 0.92019 1.20882 0.78603 0.87780 0.82883 1.90620 1.47249 1.73548 1.33191 1.45982 1.60436 1.17129 1.12660 1.21563 0.97204 0.82590 0.97843 1.22566 0.94576 0.92013 0.88096 0.91181 1.23480 1.00251 0.96211 0.97401 1.22045 0.98545 0.83939 0.93749 1.45974 1.48804 1.04417 1.36294 1.19123 1.18370 0.85024 1.10986 0.89771 1.25506 1.01395 1.00337 0.98996 1.70000 1.37522 1.29742 1.22980 0.85346 0.78115 0.80182 0.76918 1.19936 1.22328 1.21127 0.92246 0.89720 0.96295 0.89437 0.94705 0.91449 0.89128 0.89428 0.91466 0.91484 0.89916 0.75863 0.94324 0.90400 0.88150 0.90422 0.94671 0.95865 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.09 127.69 1.16 1.67 16 2 N -0.53 -14.30 4.51 -901.60 -4.07 -18.37 16 3 C 0.05 1.01 5.46 86.33 0.47 1.49 16 4 C -0.11 -1.78 6.09 30.65 0.19 -1.60 16 5 C -0.12 -1.82 6.00 30.67 0.18 -1.64 16 6 C -0.10 -2.12 5.36 30.64 0.16 -1.96 16 7 C 0.07 1.92 2.24 44.19 0.10 2.01 16 8 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 9 C 0.51 17.23 6.26 87.65 0.55 17.78 16 10 O -0.57 -22.97 14.52 -3.03 -0.04 -23.01 16 11 N -0.71 -23.41 5.33 -463.05 -2.47 -25.88 16 12 C 0.13 4.65 5.52 86.38 0.48 5.13 16 13 C 0.13 4.85 4.10 41.79 0.17 5.02 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 15 C -0.13 -4.61 8.03 30.93 0.25 -4.36 16 16 C 0.14 6.49 7.39 83.18 0.61 7.11 16 17 N -0.63 -30.15 3.65 -713.90 -2.61 -32.76 16 18 C -0.21 -10.98 10.55 84.03 0.89 -10.10 16 19 H 0.08 4.24 7.50 -2.91 -0.02 4.22 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.95 -57.12 11.51 21.65 0.25 -56.87 16 22 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H 0.06 2.11 5.63 -2.38 -0.01 2.10 16 27 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 28 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 1.53 8.09 -2.38 -0.02 1.51 16 30 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.41 12.59 8.37 -92.71 -0.78 11.82 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 42 H 0.03 1.84 7.12 -2.38 -0.02 1.82 16 43 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -68.82 347.23 -1.04 -69.85 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.19 Total: 22.46 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.68 Total: 17.13 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -8.89 Total: -133.88 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -68.82 -1.04 -69.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.295 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds